mlsanityData to 7 Oct 2026

Developing ChemDFM as a large language foundation model for chemistry

arXiv 2401.14818 ↗First posted 26 Jan 2024cs.CL cs.DLcited by 51

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Abstract (arXiv)

Artificial intelligence (AI) has played an increasingly important role in chemical research. However, most models currently used in chemistry are specialist models that require training and tuning for specific tasks. A more generic and efficient solution would be an AI model that could address many tasks and support free-form dialogue in the broad field of chemistry. In its utmost form, such a generalist AI chemist could be referred to as Chemical General Intelligence. Large language models (LLMs) have recently logged tremendous success in the general domain of natural language processing, showing emerging task generalization and free-form dialogue capabilities. However, domain knowledge of chemistry is largely missing when training general-domain LLMs. The lack of such knowledge greatly hinders the performance of generalist LLMs in the field of chemistry. To this end, we develop ChemDFM, a pioneering LLM for chemistry trained on 34B tokens from chemical literature and textbooks, and fine-tuned using 2.7M instructions. As a result, it can understand and reason with chemical knowledge in free-form dialogue. Quantitative evaluations show that ChemDFM significantly surpasses most representative open-source LLMs. It outperforms GPT-4 on a great portion of chemical tasks, despite the substantial size difference. We have open-sourced the inference codes, evaluation datasets, and model weights of ChemDFM on Huggingface (https://huggingface.co/OpenDFM/ChemDFM-v1.0-13B).

Key facts. Cited by 51 papers in the map (data through 7 Oct 2026). Builds on 44 of its 101 references that are in the map. First posted on arXiv 26 Jan 2024.

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44 of 101 references.

References · 44

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  1. 2022Large Language Models Encode Clinical Knowledgecited by 1,807
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Citing papers per year: 2024: 10; 2025: 20; 2026: 21.

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  1. 2024Large Language Model Unlearning via Embedding-Corrupted Promptscited by 112
  2. 2025From AI for Science to Agentic Science: A Survey on Autonomous Scientific Discoverycited by 74
  3. 2025A Survey of Scientific Large Language Models: From Data Foundations to Agent Frontierscited by 34
  4. 2025X-MAS: Towards Building Multi-Agent Systems with Heterogeneous LLMscited by 33
  5. 2024ChemReasoner: Heuristic Search over a Large Language Model's Knowledge Space using Quantum-Chemical Feedbackcited by 32
  6. 2024Speak-to-Structure: Evaluating LLMs in Open-domain Natural Language-Driven Molecule Generationcited by 22
  7. 2024L+M-24: Building a Dataset for Language + Molecules @ ACL 2024cited by 21
  8. 2025ChemDFM-R: A Chemical Reasoning LLM Enhanced with Atomized Chemical Knowledgecited by 20
  9. 2025ChemMLLM: Chemical Multimodal Large Language Modelcited by 16
  10. 2024PRESTO: Progressive Pretraining Enhances Synthetic Chemistry Outcomescited by 14
  11. 2025SoSBench: Benchmarking Safety Alignment on Six Scientific Domainscited by 11
  12. 2025Autonomous Agents for Scientific Discovery: Orchestrating Scientists, Language, Code, and Physicscited by 11
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  1. 2024BatGPT-Chem: A Foundation Large Model For Retrosynthesis Predictioncited by 9
  2. 2025Enhancing Chemical Reaction and Retrosynthesis Prediction with Large Language Model and Dual-task Learningcited by 9
  3. 2025MolLangBench: A Comprehensive Benchmark for Language-Prompted Molecular Structure Recognition, Editing, and Generationcited by 8
  4. 2024MULTI: Multimodal Understanding Leaderboard with Text and Imagescited by 7
  5. 2024ChemMiner: A Large Language Model Agent System for Chemical Literature Data Miningcited by 7
  6. 2025Mol-LLM: Multimodal Generalist Molecular LLM with Improved Graph Utilizationcited by 6
  7. 2026LatentChem: From Textual CoT to Latent Thinking in Chemical Reasoningcited by 6
  8. 2025QCBench: Evaluating Large Language Models on Domain-Specific Quantitative Chemistrycited by 5
  9. 2025MADD: Multi-Agent Drug Discovery Orchestracited by 4
  10. 2024Property Enhanced Instruction Tuning for Multi-task Molecule Generation with Large Language Modelscited by 3
  11. 2025RetroDFM-R: Reasoning-Driven Retrosynthesis Prediction with Large Language Models via Reinforcement Learningcited by 3
  12. 2026M^4olGen: Multi-Agent, Multi-Stage Molecular Generation under Precise Multi-Property Constraintscited by 3
  13. 2026Order Matters in Retrosynthesis: Structure-aware Generation via Reaction-Center-Guided Discrete Flow Matchingcited by 3
  14. 2025Large Language Models for Controllable Multi-property Multi-objective Molecule Optimizationcited by 2
  15. 2025ChemAU: Harness the Reasoning of LLMs in Chemical Research with Adaptive Uncertainty Estimationcited by 2
  16. 2026<SOG_k>: One LLM Token for Explicit Graph Structural Understandingcited by 2
  17. 2024Text-Augmented Multimodal LLMs for Chemical Reaction Condition Recommendationcited by 1
  18. 2025AttriLens-Mol: Attribute Guided Reinforcement Learning for Molecular Property Prediction with Large Language Modelscited by 1
  19. 2025Large Language Models Transform Organic Synthesis From Reaction Prediction to Automationcited by 1
  20. 2025Round-trip Reinforcement Learning: Self-Consistent Training for Better Chemical LLMscited by 1
  21. 2026DrugR: Optimizing Molecular Drugs through LLM-based Explicit Reasoningcited by 1
  22. 2026Fine-tuning DeepSeek-OCR-2 for Molecular Structure Recognitioncited by 1
  23. 2026Science Edge Evaluation: SEE the Missing Step Toward Real Scientific Discoverycited by 1
  24. 2025General Intelligence-based Fragmentation (GIF): A framework for peak-labeled spectra simulationcited by 0
  25. 2025ChemATP: A Training-Free Chemical Reasoning Framework for Large Language Modelscited by 0
  26. 2026A large-scale nanocrystal database with aligned synthesis and properties enabling generative inverse designcited by 0
  27. 2026MolLangData: A Large-Scale Dataset for Molecular Structure-Language Description via a Rule-Regularized Methodcited by 0
  28. 2026Modular Multi-Task Learning for Chemical Reaction Predictioncited by 0
  29. 2026RxnNano:Training Compact LLMs for Chemical Reaction and Retrosynthesis Prediction via Hierarchical Curriculum Learningcited by 0
  30. 2026Full-Stack Domain Enhancement for Combustion LLMs: Construction and Optimizationcited by 0
  31. 2026Reinforced Reasoning for End-to-End Retrosynthetic Planningcited by 0
  32. 2026MolDA: Molecular Understanding and Generation via Large Language Diffusion Modelcited by 0
  33. 2026Bolek: A Multimodal Language Model for Molecular Reasoningcited by 0
  34. 2026Rethinking Molecular Text Representations for LLMs: An Empirical Studycited by 0
  35. 2026SupraBench: A Benchmark for Supramolecular Chemistrycited by 0
  36. 2026MOF-Sleuth: Tool-Grounded Reward Alignment for Explainable Fine-Grained MOF CIF Auditingcited by 0
  37. 2026Divergence Decoding: Training-Free Capability Fusioncited by 0
  38. 2026ChemDIRT: A Diversified Instruction, Representation, and Task Benchmark for Robust Chemistry-LLM Evaluationcited by 0

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