Global Counterfactual Explainer for Graph Neural Networks
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Abstract (arXiv)
Graph neural networks (GNNs) find applications in various domains such as computational biology, natural language processing, and computer security. Owing to their popularity, there is an increasing need to explain GNN predictions since GNNs are black-box machine learning models. One way to address this is counterfactual reasoning where the objective is to change the GNN prediction by minimal changes in the input graph. Existing methods for counterfactual explanation of GNNs are limited to instance-specific local reasoning. This approach has two major limitations of not being able to offer global recourse policies and overloading human cognitive ability with too much information. In this work, we study the global explainability of GNNs through global counterfactual reasoning. Specifically, we want to find a small set of representative counterfactual graphs that explains all input graphs. Towards this goal, we propose GCFExplainer, a novel algorithm powered by vertex-reinforced random walks on an edit map of graphs with a greedy summary. Extensive experiments on real graph datasets show that the global explanation from GCFExplainer provides important high-level insights of the model behavior and achieves a 46.9% gain in recourse coverage and a 9.5% reduction in recourse cost compared to the state-of-the-art local counterfactual explainers.
Key facts. Cited by 30 papers in the map (data through 14 Oct 2026). Builds on 26 of its 56 references that are in the map. First posted on arXiv 21 Oct 2022.
Builds on
26 of 56 references.
References · 26
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- 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,361
- 2017Graph Attention Networkscited by 8,923
- 2017Inductive Representation Learning on Large Graphscited by 6,320
- 2014DeepWalk: Online Learning of Social Representationscited by 1,547
- 2018Graph Convolutional Neural Networks for Web-Scale Recommender Systemscited by 1,138
- 2018Predict then Propagate: Graph Neural Networks meet Personalized PageRankcited by 993
- 2019GNNExplainer: Generating Explanations for Graph Neural Networkscited by 737
- 2020Parameterized Explainer for Graph Neural Networkcited by 426
- 2020XGNN: Towards Model-Level Explanations of Graph Neural Networkscited by 211
- 2020PGM-Explainer: Probabilistic Graphical Model Explanations for Graph Neural Networkscited by 211
- 2021CF-GNNExplainer: Counterfactual Explanations for Graph Neural Networkscited by 119
14 more
- 2020Chip Placement with Deep Reinforcement Learningcited by 83
- 2022Learning and Evaluating Graph Neural Network Explanations based on Counterfactual and Factual Reasoningcited by 79
- 2021Robust Counterfactual Explanations on Graph Neural Networkscited by 72
- 2021Learning from Counterfactual Links for Link Predictioncited by 69
- 2021Counterfactual Graphs for Explainable Classification of Brain Networkscited by 33
- 2021GREED: A Neural Framework for Learning Graph Distance Functionscited by 32
- 2022Learning Articulated Rigid Body Dynamics with Lagrangian Graph Neural Networkcited by 23
- 2021QGTC: Accelerating Quantized Graph Neural Networks via GPU Tensor Corecited by 18
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- 2021Event Detection on Dynamic Graphscited by 4
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Citing papers per year: 2023: 8; 2024: 8; 2025: 10; 2026: 4.
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- 2023A Survey on Explainability of Graph Neural Networkscited by 29
- 2023Counterfactual Learning on Graphs: A Surveycited by 22
- 2024Graph Neural Networks for Vulnerability Detection: A Counterfactual Explanationcited by 12
- 2025Graph Neural Networks in Modern AI-aided Drug Discoverycited by 12
- 2023GNNX-BENCH: Unravelling the Utility of Perturbation-based GNN Explainers through In-depth Benchmarkingcited by 11
- 2023A Cross Attention Approach to Diagnostic Explainability using Clinical Practice Guidelines for Depressioncited by 8
- 2024View-based Explanations for Graph Neural Networkscited by 8
- 2025Recent Advances in Malware Detection: Graph Learning and Explainabilitycited by 7
- 2024GLANCE: Global Actions in a Nutshell for Counterfactual Explainabilitycited by 6
- 2023Generating Explanations to Understand and Repair Embedding-based Entity Alignmentcited by 5
- 2025Topological Structure Learning Should Be A Research Priority for LLM-Based Multi-Agent Systemscited by 5
- 2023When Graph Neural Network Meets Causality: Opportunities, Methodologies and An Outlookcited by 4
18 more
- 2024Generating Robust Counterfactual Witnesses for Graph Neural Networkscited by 4
- 2025Graph Counterfactual Explainable AI via Latent Space Traversalcited by 3
- 2024Game-theoretic Counterfactual Explanation for Graph Neural Networkscited by 2
- 2024Fast Inference of Removal-Based Node Influencecited by 2
- 2025Graph Inverse Style Transfer for Counterfactual Explainabilitycited by 2
- 2025GnnXemplar: Exemplars to Explanations -- Natural Language Rules for Global GNN Interpretabilitycited by 2
- 2026ATEX-CF: Attack-Informed Counterfactual Explanations for Graph Neural Networkscited by 2
- 2023Counterfactual Graph Transformer for Traffic Flow Predictioncited by 1
- 2023Adapting to Change: Robust Counterfactual Explanations in Dynamic Data Landscapescited by 1
- 2024Attribute-Enhanced Similarity Ranking for Sparse Link Predictioncited by 1
- 2025Interpretability of Graph Neural Networks to Assess Effects of Global Change Drivers on Ecological Networkscited by 1
- 2025COMRECGC: Global Graph Counterfactual Explainer through Common Recoursecited by 1
- 2025Towards Faithful Class-level Self-explainability in Graph Neural Networks by Subgraph Dependenciescited by 1
- 2026UNR-Explainer: Counterfactual Explanations for Unsupervised Node Representation Learning Modelscited by 1
- 2024Global Graph Counterfactual Explanation: A Subgraph Mapping Approachcited by 0
- 2025Explainable Graph Representation Learning via Graph Pattern Analysiscited by 0
- 2026Advancing Edge Classification through High-Dimensional Causal Modeling of Node-Edge Interplaycited by 0
- 2026Where Privacy Belongs: Placement Diagnosis and Certified Selection for Private Counterfactual Explanations on Graphscited by 0
- 2026Where Privacy Belongs: Placement Diagnosis and Certified Selection for Private Counterfactual Explanations on Graphs29 Sep 2026
- 2026UNR-Explainer: Counterfactual Explanations for Unsupervised Node Representation Learning Models17 May 2026
- 2026Advancing Edge Classification through High-Dimensional Causal Modeling of Node-Edge Interplay1 May 2026
- 2026ATEX-CF: Attack-Informed Counterfactual Explanations for Graph Neural Networks5 Feb 2026
- 2025Explainable Graph Representation Learning via Graph Pattern Analysis4 Dec 2025
- 2025GnnXemplar: Exemplars to Explanations -- Natural Language Rules for Global GNN Interpretability22 Sep 2025
- 2025Towards Faithful Class-level Self-explainability in Graph Neural Networks by Subgraph Dependencies15 Aug 2025
- 2025Graph Neural Networks in Modern AI-aided Drug Discovery7 Jun 2025
- 2025Topological Structure Learning Should Be A Research Priority for LLM-Based Multi-Agent Systems28 May 2025
- 2025Graph Inverse Style Transfer for Counterfactual Explainability23 May 2025
- 2025COMRECGC: Global Graph Counterfactual Explainer through Common Recourse11 May 2025
- 2025Interpretability of Graph Neural Networks to Assess Effects of Global Change Drivers on Ecological Networks19 Mar 2025
18 more
- 2025Recent Advances in Malware Detection: Graph Learning and Explainability14 Feb 2025
- 2025Graph Counterfactual Explainable AI via Latent Space Traversal15 Jan 2025
- 2024Attribute-Enhanced Similarity Ranking for Sparse Link Prediction29 Nov 2024
- 2024Global Graph Counterfactual Explanation: A Subgraph Mapping Approach25 Oct 2024
- 2024GLANCE: Global Actions in a Nutshell for Counterfactual Explainability29 May 2024
- 2024Generating Robust Counterfactual Witnesses for Graph Neural Networks30 Apr 2024
- 2024Graph Neural Networks for Vulnerability Detection: A Counterfactual Explanation24 Apr 2024
- 2024Fast Inference of Removal-Based Node Influence13 Mar 2024
- 2024Game-theoretic Counterfactual Explanation for Graph Neural Networks8 Feb 2024
- 2024View-based Explanations for Graph Neural Networks4 Jan 2024
- 2023When Graph Neural Network Meets Causality: Opportunities, Methodologies and An Outlook19 Dec 2023
- 2023Generating Explanations to Understand and Repair Embedding-based Entity Alignment8 Dec 2023
- 2023A Cross Attention Approach to Diagnostic Explainability using Clinical Practice Guidelines for Depression23 Nov 2023
- 2023GNNX-BENCH: Unravelling the Utility of Perturbation-based GNN Explainers through In-depth Benchmarking3 Oct 2023
- 2023Adapting to Change: Robust Counterfactual Explanations in Dynamic Data Landscapes4 Aug 2023
- 2023Counterfactual Graph Transformer for Traffic Flow Prediction1 Aug 2023
- 2023A Survey on Explainability of Graph Neural Networks2 Jun 2023
- 2023Counterfactual Learning on Graphs: A Survey3 Apr 2023
- 2023A Survey on Explainability of Graph Neural Networkscited by 29
- 2023Counterfactual Learning on Graphs: A Surveycited by 22
- 2024Graph Neural Networks for Vulnerability Detection: A Counterfactual Explanationcited by 12
- 2025Graph Neural Networks in Modern AI-aided Drug Discoverycited by 12
- 2023GNNX-BENCH: Unravelling the Utility of Perturbation-based GNN Explainers through In-depth Benchmarkingcited by 11
- 2023A Cross Attention Approach to Diagnostic Explainability using Clinical Practice Guidelines for Depressioncited by 8
- 2024View-based Explanations for Graph Neural Networkscited by 8
- 2025Recent Advances in Malware Detection: Graph Learning and Explainabilitycited by 7
- 2024GLANCE: Global Actions in a Nutshell for Counterfactual Explainabilitycited by 6
- 2023Generating Explanations to Understand and Repair Embedding-based Entity Alignmentcited by 5
- 2023When Graph Neural Network Meets Causality: Opportunities, Methodologies and An Outlookcited by 4
- 2024Generating Robust Counterfactual Witnesses for Graph Neural Networkscited by 4
12 most cited of 29 All 29 (JSON)
- 2026Where Privacy Belongs: Placement Diagnosis and Certified Selection for Private Counterfactual Explanations on Graphs29 Sep 2026
- 2026UNR-Explainer: Counterfactual Explanations for Unsupervised Node Representation Learning Models17 May 2026
- 2026Advancing Edge Classification through High-Dimensional Causal Modeling of Node-Edge Interplay1 May 2026
- 2026ATEX-CF: Attack-Informed Counterfactual Explanations for Graph Neural Networks5 Feb 2026
- 2025Explainable Graph Representation Learning via Graph Pattern Analysis4 Dec 2025
- 2025GnnXemplar: Exemplars to Explanations -- Natural Language Rules for Global GNN Interpretability22 Sep 2025
- 2025Towards Faithful Class-level Self-explainability in Graph Neural Networks by Subgraph Dependencies15 Aug 2025
- 2025Graph Neural Networks in Modern AI-aided Drug Discovery7 Jun 2025
- 2025Graph Inverse Style Transfer for Counterfactual Explainability23 May 2025
- 2025COMRECGC: Global Graph Counterfactual Explainer through Common Recourse11 May 2025
- 2025Interpretability of Graph Neural Networks to Assess Effects of Global Change Drivers on Ecological Networks19 Mar 2025
- 2025Recent Advances in Malware Detection: Graph Learning and Explainability14 Feb 2025
12 newest of 29 All 29 (JSON)