Learning neural network potentials from experimental data via Differentiable Trajectory Reweighting
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Abstract (arXiv)
In molecular dynamics (MD), neural network (NN) potentials trained bottom-up on quantum mechanical data have seen tremendous success recently. Top-down approaches that learn NN potentials directly from experimental data have received less attention, typically facing numerical and computational challenges when backpropagating through MD simulations. We present the Differentiable Trajectory Reweighting (DiffTRe) method, which bypasses differentiation through the MD simulation for time-independent observables. Leveraging thermodynamic perturbation theory, we avoid exploding gradients and achieve around 2 orders of magnitude speed-up in gradient computation for top-down learning. We show effectiveness of DiffTRe in learning NN potentials for an atomistic model of diamond and a coarse-grained model of water based on diverse experimental observables including thermodynamic, structural and mechanical properties. Importantly, DiffTRe also generalizes bottom-up structural coarse-graining methods such as iterative Boltzmann inversion to arbitrary potentials. The presented method constitutes an important milestone towards enriching NN potentials with experimental data, particularly when accurate bottom-up data is unavailable.
Key facts. Cited by 26 papers in the map (data through 7 Oct 2026). Builds on 20 of its 85 references that are in the map. First posted on arXiv 2 Jun 2021.
Builds on
20 of 85 references.
References · 20
- 2014Adam: A Method for Stochastic Optimizationcited by 36,960
- 2018Neural Ordinary Differential Equationscited by 3,733
- 2017Neural Message Passing for Quantum Chemistrycited by 3,460
- 2015Automatic differentiation in machine learning: a surveycited by 846
- 2017SchNet: A continuous-filter convolutional neural network for modeling quantum interactionscited by 569
- 2020Directional Message Passing for Molecular Graphscited by 556
- 2020Fast and Uncertainty-Aware Directional Message Passing for Non-Equilibrium Moleculescited by 254
- 2019DiffTaichi: Differentiable Programming for Physical Simulationcited by 248
- 2020Learning to Control PDEs with Differentiable Physicscited by 131
- 2019Machine learning for molecular simulationcited by 109
- 2016A Differentiable Physics Engine for Deep Learning in Roboticscited by 107
- 2019A Differentiable Programming System to Bridge Machine Learning and Scientific Computingcited by 81
8 more
- 2018Machine Learning of coarse-grained Molecular Dynamics Force Fieldscited by 68
- 2020OrbNet: Deep Learning for Quantum Chemistry Using Symmetry-Adapted Atomic-Orbital Featurescited by 63
- 2020Coarse Graining Molecular Dynamics with Graph Neural Networkscited by 56
- 2020TorchMD: A deep learning framework for molecular simulationscited by 55
- 2018Active Learning of Uniformly Accurate Inter-atomic Potentials for Materials Simulationcited by 37
- 2020Differentiable Molecular Simulations for Control and Learningcited by 25
- 2021Differentiable sampling of molecular geometries with uncertainty-based adversarial attackscited by 25
- 2021Accelerated Simulations of Molecular Systems through Learning of their Effective Dynamicscited by 2
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Citing papers per year: 2022: 4; 2023: 3; 2024: 5; 2025: 10; 2026: 4.
26 papers.
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- 2022Forces are not Enough: Benchmark and Critical Evaluation for Machine Learning Force Fields with Molecular Simulationscited by 92
- 2022Machine Learning Coarse-Grained Potentials of Protein Thermodynamicscited by 37
- 2023Accurate machine learning force fields via experimental and simulation data fusioncited by 12
- 2024chemtrain: Learning Deep Potential Models via Automatic Differentiation and Statistical Physicscited by 12
- 2022Scalable Bayesian Uncertainty Quantification for Neural Network Potentials: Promise and Pitfallscited by 11
- 2024Predicting solvation free energies with an implicit solvent machine learning potentialcited by 10
- 2023Statistically Optimal Force Aggregation for Coarse-Graining Molecular Dynamicscited by 9
- 2024Stability-Aware Training of Machine Learning Force Fields with Differentiable Boltzmann Estimatorscited by 8
- 2025chemtrain-deploy: A parallel and scalable framework for machine learning potentials in million-atom MD simulationscited by 6
- 2025Learning Non-Local Molecular Interactions via Equivariant Local Representations and Charge Equilibrationcited by 5
- 2025UniFFBench: Evaluating Universal Machine Learning Force Fields Against Experimental Measurementscited by 5
- 2022Learning Pair Potentials using Differentiable Simulationscited by 4
14 more
- 2023Top-down machine learning of coarse-grained protein force-fieldscited by 4
- 2024On the design space between molecular mechanics and machine learning force fieldscited by 3
- 2025Enhanced Sampling for Efficient Learning of Coarse-Grained Machine Learning Potentialscited by 3
- 2025Enhancing Machine Learning Potentials through Transfer Learning across Chemical Elementscited by 2
- 2025Morphology-Aware Peptide Discovery via Masked Conditional Generative Modelingcited by 2
- 2025Generalization of Long-Range Machine Learning Potentials in Complex Chemical Spacescited by 2
- 2025JaxSGMC: Modular stochastic gradient MCMC in JAXcited by 1
- 2025Refining Machine Learning Potentials through Thermodynamic Theory of Phase Transitionscited by 1
- 2024Implicit Delta Learning of High Fidelity Neural Network Potentialscited by 0
- 2025Operator Forces For Coarse-Grained Molecular Dynamicscited by 0
- 2026Coarse-Grained Boltzmann Generatorscited by 0
- 2026ConSolv: Solvent-Conditional Machine Learning Implicit Solvent Potentialcited by 0
- 2026Transferable Implicit Solvent Machine Learning Potential for Drugs and Proteins Approaching Ab Initio Accuracycited by 0
- 2026Universal Thermodynamic Interatomic Potentials for Crystalline Materialscited by 0
- 2026Universal Thermodynamic Interatomic Potentials for Crystalline Materials14 Aug 2026
- 2026Transferable Implicit Solvent Machine Learning Potential for Drugs and Proteins Approaching Ab Initio Accuracy12 Jul 2026
- 2026ConSolv: Solvent-Conditional Machine Learning Implicit Solvent Potential23 Jun 2026
- 2026Coarse-Grained Boltzmann Generators11 Feb 2026
- 2025Generalization of Long-Range Machine Learning Potentials in Complex Chemical Spaces8 Dec 2025
- 2025Refining Machine Learning Potentials through Thermodynamic Theory of Phase Transitions3 Dec 2025
- 2025Enhanced Sampling for Efficient Learning of Coarse-Grained Machine Learning Potentials13 Oct 2025
- 2025Morphology-Aware Peptide Discovery via Masked Conditional Generative Modeling2 Sep 2025
- 2025UniFFBench: Evaluating Universal Machine Learning Force Fields Against Experimental Measurements7 Aug 2025
- 2025Operator Forces For Coarse-Grained Molecular Dynamics24 Jun 2025
- 2025chemtrain-deploy: A parallel and scalable framework for machine learning potentials in million-atom MD simulations4 Jun 2025
- 2025JaxSGMC: Modular stochastic gradient MCMC in JAX16 May 2025
14 more
- 2025Enhancing Machine Learning Potentials through Transfer Learning across Chemical Elements19 Feb 2025
- 2025Learning Non-Local Molecular Interactions via Equivariant Local Representations and Charge Equilibration31 Jan 2025
- 2024Implicit Delta Learning of High Fidelity Neural Network Potentials8 Dec 2024
- 2024On the design space between molecular mechanics and machine learning force fields3 Sep 2024
- 2024chemtrain: Learning Deep Potential Models via Automatic Differentiation and Statistical Physics28 Aug 2024
- 2024Predicting solvation free energies with an implicit solvent machine learning potential31 May 2024
- 2024Stability-Aware Training of Machine Learning Force Fields with Differentiable Boltzmann Estimators21 Feb 2024
- 2023Accurate machine learning force fields via experimental and simulation data fusion17 Aug 2023
- 2023Top-down machine learning of coarse-grained protein force-fields20 Jun 2023
- 2023Statistically Optimal Force Aggregation for Coarse-Graining Molecular Dynamics14 Feb 2023
- 2022Scalable Bayesian Uncertainty Quantification for Neural Network Potentials: Promise and Pitfalls15 Dec 2022
- 2022Machine Learning Coarse-Grained Potentials of Protein Thermodynamics14 Dec 2022
- 2022Forces are not Enough: Benchmark and Critical Evaluation for Machine Learning Force Fields with Molecular Simulations13 Oct 2022
- 2022Learning Pair Potentials using Differentiable Simulations16 Sep 2022
- 2022Forces are not Enough: Benchmark and Critical Evaluation for Machine Learning Force Fields with Molecular Simulationscited by 92
- 2022Machine Learning Coarse-Grained Potentials of Protein Thermodynamicscited by 37
- 2023Accurate machine learning force fields via experimental and simulation data fusioncited by 12
- 2024chemtrain: Learning Deep Potential Models via Automatic Differentiation and Statistical Physicscited by 12
- 2022Scalable Bayesian Uncertainty Quantification for Neural Network Potentials: Promise and Pitfallscited by 11
- 2024Predicting solvation free energies with an implicit solvent machine learning potentialcited by 10
- 2023Statistically Optimal Force Aggregation for Coarse-Graining Molecular Dynamicscited by 9
- 2024Stability-Aware Training of Machine Learning Force Fields with Differentiable Boltzmann Estimatorscited by 8
- 2025chemtrain-deploy: A parallel and scalable framework for machine learning potentials in million-atom MD simulationscited by 6
- 2025Learning Non-Local Molecular Interactions via Equivariant Local Representations and Charge Equilibrationcited by 5
- 2025UniFFBench: Evaluating Universal Machine Learning Force Fields Against Experimental Measurementscited by 5
- 2022Learning Pair Potentials using Differentiable Simulationscited by 4
12 most cited of 26 All 26 (JSON)
- 2026Universal Thermodynamic Interatomic Potentials for Crystalline Materials14 Aug 2026
- 2026Transferable Implicit Solvent Machine Learning Potential for Drugs and Proteins Approaching Ab Initio Accuracy12 Jul 2026
- 2026ConSolv: Solvent-Conditional Machine Learning Implicit Solvent Potential23 Jun 2026
- 2026Coarse-Grained Boltzmann Generators11 Feb 2026
- 2025Generalization of Long-Range Machine Learning Potentials in Complex Chemical Spaces8 Dec 2025
- 2025Refining Machine Learning Potentials through Thermodynamic Theory of Phase Transitions3 Dec 2025
- 2025Enhanced Sampling for Efficient Learning of Coarse-Grained Machine Learning Potentials13 Oct 2025
- 2025Morphology-Aware Peptide Discovery via Masked Conditional Generative Modeling2 Sep 2025
- 2025UniFFBench: Evaluating Universal Machine Learning Force Fields Against Experimental Measurements7 Aug 2025
- 2025Operator Forces For Coarse-Grained Molecular Dynamics24 Jun 2025
- 2025chemtrain-deploy: A parallel and scalable framework for machine learning potentials in million-atom MD simulations4 Jun 2025
- 2025JaxSGMC: Modular stochastic gradient MCMC in JAX16 May 2025
12 newest of 26 All 26 (JSON)