mlsanityData to 7 Oct 2026

Differentiable sampling of molecular geometries with uncertainty-based adversarial attacks

arXiv 2101.11588 ↗First posted 27 Jan 2021cs.LG cond-mat.stat-mech physics.chem-phcited by 25

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Abstract (arXiv)

Neural network (NN) interatomic potentials provide fast prediction of potential energy surfaces, closely matching the accuracy of the electronic structure methods used to produce the training data. However, NN predictions are only reliable within well-learned training domains, and show volatile behavior when extrapolating. Uncertainty quantification approaches can flag atomic configurations for which prediction confidence is low, but arriving at such uncertain regions requires expensive sampling of the NN phase space, often using atomistic simulations. Here, we exploit automatic differentiation to drive atomistic systems towards high-likelihood, high-uncertainty configurations without the need for molecular dynamics simulations. By performing adversarial attacks on an uncertainty metric, informative geometries that expand the training domain of NNs are sampled. When combined to an active learning loop, this approach bootstraps and improves NN potentials while decreasing the number of calls to the ground truth method. This efficiency is demonstrated on sampling of kinetic barriers and collective variables in molecules, and can be extended to any NN potential architecture and materials system.

Key facts. Cited by 25 papers in the map (data through 7 Oct 2026). Builds on 19 of its 95 references that are in the map. First posted on arXiv 27 Jan 2021.

Builds on

19 of 95 references.

References · 19

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7 more
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Cited by year (2026 to 7 Oct)

Citing papers per year: 2021: 2; 2022: 4; 2023: 8; 2024: 6; 2025: 3; 2026: 2.

25 papers.

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  1. 2022Forces are not Enough: Benchmark and Critical Evaluation for Machine Learning Force Fields with Molecular Simulationscited by 92
  2. 2022SPICE, A Dataset of Drug-like Molecules and Peptides for Training Machine Learning Potentialscited by 80
  3. 2024Open Materials 2024 (OMat24) Inorganic Materials Dataset and Modelscited by 50
  4. 2023Single-model uncertainty quantification in neural network potentials does not consistently outperform model ensemblescited by 30
  5. 2021Learning neural network potentials from experimental data via Differentiable Trajectory Reweightingcited by 26
  6. 2022Hyperactive Learning (HAL) for Data-Driven Interatomic Potentialscited by 17
  7. 2023Uncertainty-biased molecular dynamics for learning uniformly accurate interatomic potentialscited by 16
  8. 2023Accelerating Molecular Graph Neural Networks via Knowledge Distillationcited by 11
  9. 2023Data efficiency and extrapolation trends in neural network interatomic potentialscited by 10
  10. 2024Model-free quantification of completeness, uncertainties, and outliers in atomistic machine learning using information theorycited by 10
  11. 2023Neural Operator: Is data all you need to model the world? An insight into the paradigm of data-driven scientific MLcited by 8
  12. 2023Machine-learning-accelerated simulations to enable automatic surface reconstructioncited by 8
13 more
  1. 2021Excited state, non-adiabatic dynamics of large photoswitchable molecules using a chemically transferable machine learning potentialcited by 7
  2. 2022Benchmarking Machine Learning Robustness in Covid-19 Genome Sequence Classificationcited by 6
  3. 2023Allegro-Legato: Scalable, Fast, and Robust Neural-Network Quantum Molecular Dynamics via Sharpness-Aware Minimizationcited by 3
  4. 2023Transformer-Based Neural Surrogate for Link-Level Path Loss Prediction from Variable-Sized Mapscited by 3
  5. 2024On the design space between molecular mechanics and machine learning force fieldscited by 3
  6. 2024Enhanced sampling of robust molecular datasets with uncertainty-based collective variablescited by 2
  7. 2025Learning atomic forces from uncertainty-calibrated adversarial attackscited by 2
  8. 2024Evaluation of uncertainty estimations for Gaussian process regression based machine learning interatomic potentialscited by 1
  9. 2025Unsupervised Atomic Data Mining via Multi-Kernel Graph Autoencoders for Machine Learning Force Fieldscited by 1
  10. 2024Simulating, Fast and Slow: Learning Policies for Black-Box Optimizationcited by 0
  11. 2025Maximizing Efficiency of Dataset Compression for Machine Learning Potentials With Information Theorycited by 0
  12. 2026Stein Kernelized Molecular Dynamics for Active Learning of Interatomic Potentialscited by 0
  13. 2026MLIP Detective: Active Failure Mode Discovery Beyond Benchmark Scores for Machine-Learning Interatomic Potentialscited by 0