Context-encoding Variational Autoencoder for Unsupervised Anomaly Detection
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Abstract (arXiv)
Unsupervised learning can leverage large-scale data sources without the need for annotations. In this context, deep learning-based auto encoders have shown great potential in detecting anomalies in medical images. However, state-of-the-art anomaly scores are still based on the reconstruction error, which lacks in two essential parts: it ignores the model-internal representation employed for reconstruction, and it lacks formal assertions and comparability between samples. We address these shortcomings by proposing the Context-encoding Variational Autoencoder (ceVAE) which combines reconstruction- with density-based anomaly scoring. This improves the sample- as well as pixel-wise results. In our experiments on the BraTS-2017 and ISLES-2015 segmentation benchmarks, the ceVAE achieves unsupervised ROC-AUCs of 0.95 and 0.89, respectively, thus outperforming state-of-the-art methods by a considerable margin.
Key facts. Cited by 64 papers in the map (data through 14 Oct 2026). First posted on arXiv 14 Dec 2018.
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Citing papers per year: 2021: 14; 2022: 13; 2023: 11; 2024: 14; 2025: 9; 2026: 3.
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- 2022Diffusion Models for Medical Image Analysis: A Comprehensive Surveycited by 273
- 2022Diffusion Models for Medical Anomaly Detectioncited by 232
- 2021Self-Supervised Predictive Convolutional Attentive Block for Anomaly Detectioncited by 119
- 2022What is Healthy? Generative Counterfactual Diffusion for Lesion Localizationcited by 52
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- 2021Detecting Outliers with Poisson Image Interpolationcited by 44
- 2023Diffusion Models for Counterfactual Generation and Anomaly Detection in Brain Imagescited by 30
- 2024MedIAnomaly: A comparative study of anomaly detection in medical imagescited by 26
- 2023Unsupervised Anomaly Detection in Medical Images Using Masked Diffusion Modelcited by 25
- 2023The role of noise in denoising models for anomaly detection in medical imagescited by 23
- 2024Rethinking Autoencoders for Medical Anomaly Detection from A Theoretical Perspectivecited by 23
38 more
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- 2023Guided Reconstruction with Conditioned Diffusion Models for Unsupervised Anomaly Detection in Brain MRIscited by 18
- 2021Implicit field learning for unsupervised anomaly detection in medical imagescited by 17
- 2021OLED: One-Class Learned Encoder-Decoder Network with Adversarial Context Masking for Novelty Detectioncited by 14
- 2023Many tasks make light work: Learning to localise medical anomalies from multiple synthetic taskscited by 12
- 2021Unsupervised Anomaly Segmentation using Image-Semantic Cycle Translationcited by 11
- 2024CardiacNet: Learning to Reconstruct Abnormalities for Cardiac Disease Assessment from Echocardiogram Videoscited by 11
- 2024Evaluation of pseudo-healthy image reconstruction for anomaly detection with deep generative models: Application to brain FDG PETcited by 10
- 2024Leveraging the Mahalanobis Distance to enhance Unsupervised Brain MRI Anomaly Detectioncited by 10
- 2023Masked Autoencoders for Unsupervised Anomaly Detection in Medical Imagescited by 9
- 2023A Survey of Emerging Applications of Diffusion Probabilistic Models in MRIcited by 9
- 2022StRegA: Unsupervised Anomaly Detection in Brain MRIs using a Compact Context-encoding Variational Autoencodercited by 6
- 2022What do we learn? Debunking the Myth of Unsupervised Outlier Detectioncited by 6
- 2024MAEDiff: Masked Autoencoder-enhanced Diffusion Models for Unsupervised Anomaly Detection in Brain Imagescited by 6
- 2024Towards Universal Unsupervised Anomaly Detection in Medical Imagingcited by 6
- 2025Scale-Aware Contrastive Reverse Distillation for Unsupervised Medical Anomaly Detectioncited by 6
- 2025Conditional diffusion models for guided anomaly detection in brain images using fluid-driven anomaly randomizationcited by 6
- 2021Looking at the whole picture: constrained unsupervised anomaly segmentationcited by 4
- 2022Unsupervised Anomaly Detection in 3D Brain MRI using Deep Learning with Multi-Task Brain Age Predictioncited by 4
- 2022Assessing Dataset Bias in Computer Visioncited by 4
- 2024Solar synthetic imaging: Introducing denoising diffusion probabilistic models on SDO/AIA datacited by 4
- 2023CRADL: Contrastive Representations for Unsupervised Anomaly Detection and Localizationcited by 3
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- 2024Synomaly Noise and Multi-Stage Diffusion: A Novel Approach for Unsupervised Anomaly Detection in Medical Imagescited by 3
- 2021Leveraging 3D Information in Unsupervised Brain MRI Segmentationcited by 2
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- 2022InstantGroup: Instant Template Generation for Scalable Group of Brain MRI Registrationcited by 2
- 2023Histogram- and Diffusion-Based Medical Out-of-Distribution Detectioncited by 2
- 2021Evaluating the Use of Reconstruction Error for Novelty Localizationcited by 1
- 2021ASC-Net: Unsupervised Medical Anomaly Segmentation Using an Adversarial-based Selective Cutting Networkcited by 1
- 2024Pancreatic Tumor Segmentation as Anomaly Detection in CT Images Using Denoising Diffusion Modelscited by 1
- 2024SincVAE: A new semi-supervised approach to improve anomaly detection on EEG data using SincNet and variational autoencodercited by 1
- 2025ADMN: A Layer-Wise Adaptive Multimodal Network for Dynamic Input Noise and Compute Resourcescited by 1
- 2025Patch2Loc: Learning to Localize Patches for Unsupervised Brain Lesion Detectioncited by 1
- 2025ART-ASyn: Anatomy-aware Realistic Texture-based Anomaly Synthesis Framework for Chest X-Rayscited by 1
- 2021Automated triaging of head MRI examinations using convolutional neural networkscited by 0
- 20213-Dimensional Deep Learning with Spatial Erasing for Unsupervised Anomaly Segmentation in Brain MRIcited by 0
50 most cited of 64 All 64 (JSON)
- 2026Quasi-Binarized Autoencoders: An Architecture-Independent Information Bottleneck for Medical Image Anomaly Detection7 Oct 2026
- 2026MedSAD-CLIP: Supervised CLIP with Token-Patch Cross-Attention for Medical Anomaly Detection and Segmentation18 Mar 2026
- 2026Joint Embedding Variational Bayes5 Feb 2026
- 2025ART-ASyn: Anatomy-aware Realistic Texture-based Anomaly Synthesis Framework for Chest X-Rays29 Nov 2025
- 2025Towards Label-Free Brain Tumor Segmentation: Unsupervised Learning with Multimodal MRI17 Oct 2025
- 2025FM-FoG: A Real-Time Foundation Model-based Wearable System for Freezing-of-Gait Mitigation29 Sep 2025
- 2025CADD: Context aware disease deviations via restoration of brain images using normative conditional diffusion models5 Aug 2025
- 2025Patch2Loc: Learning to Localize Patches for Unsupervised Brain Lesion Detection25 Jun 2025
- 2025Conditional diffusion models for guided anomaly detection in brain images using fluid-driven anomaly randomization11 Jun 2025
- 2025Bayesian Autoencoder for Medical Anomaly Detection: Uncertainty-Aware Approach for Brain 2 MRI Analysis22 Apr 2025
- 2025Scale-Aware Contrastive Reverse Distillation for Unsupervised Medical Anomaly Detection18 Mar 2025
- 2025ADMN: A Layer-Wise Adaptive Multimodal Network for Dynamic Input Noise and Compute Resources11 Feb 2025
38 more
- 2024Synomaly Noise and Multi-Stage Diffusion: A Novel Approach for Unsupervised Anomaly Detection in Medical Images6 Nov 2024
- 2024Denoising Diffusion Models for Anomaly Localization in Medical Images31 Oct 2024
- 2024CardiacNet: Learning to Reconstruct Abnormalities for Cardiac Disease Assessment from Echocardiogram Videos28 Oct 2024
- 2024A Survey on Cell Nuclei Instance Segmentation and Classification: Leveraging Context and Attention26 Jul 2024
- 2024Leveraging the Mahalanobis Distance to enhance Unsupervised Brain MRI Anomaly Detection17 Jul 2024
- 2024SincVAE: A new semi-supervised approach to improve anomaly detection on EEG data using SincNet and variational autoencoder25 Jun 2024
- 2024Enhancing Anomaly Detection Generalization through Knowledge Exposure: The Dual Effects of Augmentation15 Jun 2024
- 2024Pancreatic Tumor Segmentation as Anomaly Detection in CT Images Using Denoising Diffusion Models4 Jun 2024
- 2024MedIAnomaly: A comparative study of anomaly detection in medical images6 Apr 2024
- 2024Solar synthetic imaging: Introducing denoising diffusion probabilistic models on SDO/AIA data3 Apr 2024
- 2024Rethinking Autoencoders for Medical Anomaly Detection from A Theoretical Perspective14 Mar 2024
- 2024Evaluation of pseudo-healthy image reconstruction for anomaly detection with deep generative models: Application to brain FDG PET29 Jan 2024
- 2024Towards Universal Unsupervised Anomaly Detection in Medical Imaging19 Jan 2024
- 2024MAEDiff: Masked Autoencoder-enhanced Diffusion Models for Unsupervised Anomaly Detection in Brain Images19 Jan 2024
- 2023Guided Reconstruction with Conditioned Diffusion Models for Unsupervised Anomaly Detection in Brain MRIs7 Dec 2023
- 2023A Survey of Emerging Applications of Diffusion Probabilistic Models in MRI19 Nov 2023
- 2023Histogram- and Diffusion-Based Medical Out-of-Distribution Detection12 Oct 2023
- 2023Diffusion Models for Counterfactual Generation and Anomaly Detection in Brain Images3 Aug 2023
- 2023Masked Autoencoders for Unsupervised Anomaly Detection in Medical Images14 Jul 2023
- 2023Many tasks make light work: Learning to localise medical anomalies from multiple synthetic tasks3 Jul 2023
- 2023Unsupervised Anomaly Detection in Medical Images Using Masked Diffusion Model31 May 2023
- 2023Technical outlier detection via convolutional variational autoencoder for the ADMANI breast mammogram dataset20 May 2023
- 2023Patched Diffusion Models for Unsupervised Anomaly Detection in Brain MRI7 Mar 2023
- 2023The role of noise in denoising models for anomaly detection in medical images19 Jan 2023
- 2023CRADL: Contrastive Representations for Unsupervised Anomaly Detection and Localization5 Jan 2023
- 2022Diffusion Models for Medical Image Analysis: A Comprehensive Survey14 Nov 2022
- 2022InstantGroup: Instant Template Generation for Scalable Group of Brain MRI Registration10 Nov 2022
- 2022Dual-distribution discrepancy with self-supervised refinement for anomaly detection in medical images9 Oct 2022
- 2022What is Healthy? Generative Counterfactual Diffusion for Lesion Localization25 Jul 2022
- 2022Augment to Detect Anomalies with Continuous Labelling3 Jul 2022
- 2022Anomaly Detection with Adversarially Learned Perturbations of Latent Space3 Jul 2022
- 2022What do we learn? Debunking the Myth of Unsupervised Outlier Detection8 Jun 2022
- 2022Assessing Dataset Bias in Computer Vision3 May 2022
- 2022Harmonizing Pathological and Normal Pixels for Pseudo-healthy Synthesis29 Mar 2022
- 2022Diffusion Models for Medical Anomaly Detection8 Mar 2022
- 2022Constrained unsupervised anomaly segmentation3 Mar 2022
- 2022StRegA: Unsupervised Anomaly Detection in Brain MRIs using a Compact Context-encoding Variational Autoencoder31 Jan 2022
- 2022Unsupervised Anomaly Detection in 3D Brain MRI using Deep Learning with Multi-Task Brain Age Prediction31 Jan 2022
50 newest of 64 All 64 (JSON)
- 2022Diffusion Models for Medical Image Analysis: A Comprehensive Surveycited by 273
- 2022Diffusion Models for Medical Anomaly Detectioncited by 232
- 2023Patched Diffusion Models for Unsupervised Anomaly Detection in Brain MRIcited by 45
- 2023Diffusion Models for Counterfactual Generation and Anomaly Detection in Brain Imagescited by 30
- 2023Unsupervised Anomaly Detection in Medical Images Using Masked Diffusion Modelcited by 25
- 2023The role of noise in denoising models for anomaly detection in medical imagescited by 23
- 2023Guided Reconstruction with Conditioned Diffusion Models for Unsupervised Anomaly Detection in Brain MRIscited by 18
- 2023A Survey of Emerging Applications of Diffusion Probabilistic Models in MRIcited by 9
- 2024MAEDiff: Masked Autoencoder-enhanced Diffusion Models for Unsupervised Anomaly Detection in Brain Imagescited by 6
- 2025Conditional diffusion models for guided anomaly detection in brain images using fluid-driven anomaly randomizationcited by 6
- 2024Solar synthetic imaging: Introducing denoising diffusion probabilistic models on SDO/AIA datacited by 4
- 2024Denoising Diffusion Models for Anomaly Localization in Medical Imagescited by 3
12 most cited of 15 All 15 (JSON)
- 2025CADD: Context aware disease deviations via restoration of brain images using normative conditional diffusion models5 Aug 2025
- 2025Conditional diffusion models for guided anomaly detection in brain images using fluid-driven anomaly randomization11 Jun 2025
- 2024Denoising Diffusion Models for Anomaly Localization in Medical Images31 Oct 2024
- 2024Pancreatic Tumor Segmentation as Anomaly Detection in CT Images Using Denoising Diffusion Models4 Jun 2024
- 2024Solar synthetic imaging: Introducing denoising diffusion probabilistic models on SDO/AIA data3 Apr 2024
- 2024MAEDiff: Masked Autoencoder-enhanced Diffusion Models for Unsupervised Anomaly Detection in Brain Images19 Jan 2024
- 2023Guided Reconstruction with Conditioned Diffusion Models for Unsupervised Anomaly Detection in Brain MRIs7 Dec 2023
- 2023A Survey of Emerging Applications of Diffusion Probabilistic Models in MRI19 Nov 2023
- 2023Histogram- and Diffusion-Based Medical Out-of-Distribution Detection12 Oct 2023
- 2023Diffusion Models for Counterfactual Generation and Anomaly Detection in Brain Images3 Aug 2023
- 2023Unsupervised Anomaly Detection in Medical Images Using Masked Diffusion Model31 May 2023
- 2023Patched Diffusion Models for Unsupervised Anomaly Detection in Brain MRI7 Mar 2023
12 newest of 15 All 15 (JSON)
- 2021Self-Supervised Predictive Convolutional Attentive Block for Anomaly Detectioncited by 119
- 2022What is Healthy? Generative Counterfactual Diffusion for Lesion Localizationcited by 52
- 2021Consistency Regularization for Variational Auto-Encoderscited by 51
- 2021Detecting Outliers with Poisson Image Interpolationcited by 44
- 2024MedIAnomaly: A comparative study of anomaly detection in medical imagescited by 26
- 2024Rethinking Autoencoders for Medical Anomaly Detection from A Theoretical Perspectivecited by 23
- 2022Constrained unsupervised anomaly segmentationcited by 19
- 2021Proxy-bridged Image Reconstruction Network for Anomaly Detection in Medical Imagescited by 18
- 2021Implicit field learning for unsupervised anomaly detection in medical imagescited by 17
- 2021OLED: One-Class Learned Encoder-Decoder Network with Adversarial Context Masking for Novelty Detectioncited by 14
- 2023Many tasks make light work: Learning to localise medical anomalies from multiple synthetic taskscited by 12
- 2021Unsupervised Anomaly Segmentation using Image-Semantic Cycle Translationcited by 11
12 most cited of 48 All 48 (JSON)
- 2026Quasi-Binarized Autoencoders: An Architecture-Independent Information Bottleneck for Medical Image Anomaly Detection7 Oct 2026
- 2026MedSAD-CLIP: Supervised CLIP with Token-Patch Cross-Attention for Medical Anomaly Detection and Segmentation18 Mar 2026
- 2026Joint Embedding Variational Bayes5 Feb 2026
- 2025ART-ASyn: Anatomy-aware Realistic Texture-based Anomaly Synthesis Framework for Chest X-Rays29 Nov 2025
- 2025Towards Label-Free Brain Tumor Segmentation: Unsupervised Learning with Multimodal MRI17 Oct 2025
- 2025FM-FoG: A Real-Time Foundation Model-based Wearable System for Freezing-of-Gait Mitigation29 Sep 2025
- 2025Patch2Loc: Learning to Localize Patches for Unsupervised Brain Lesion Detection25 Jun 2025
- 2025Bayesian Autoencoder for Medical Anomaly Detection: Uncertainty-Aware Approach for Brain 2 MRI Analysis22 Apr 2025
- 2025ADMN: A Layer-Wise Adaptive Multimodal Network for Dynamic Input Noise and Compute Resources11 Feb 2025
- 2024Synomaly Noise and Multi-Stage Diffusion: A Novel Approach for Unsupervised Anomaly Detection in Medical Images6 Nov 2024
- 2024CardiacNet: Learning to Reconstruct Abnormalities for Cardiac Disease Assessment from Echocardiogram Videos28 Oct 2024
- 2024A Survey on Cell Nuclei Instance Segmentation and Classification: Leveraging Context and Attention26 Jul 2024
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