Sparse learning of stochastic dynamic equations
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Abstract (arXiv)
With the rapid increase of available data for complex systems, there is great interest in the extraction of physically relevant information from massive datasets. Recently, a framework called Sparse Identification of Nonlinear Dynamics (SINDy) has been introduced to identify the governing equations of dynamical systems from simulation data. In this study, we extend SINDy to stochastic dynamical systems, which are frequently used to model biophysical processes. We prove the asymptotic correctness of stochastics SINDy in the infinite data limit, both in the original and projected variables. We discuss algorithms to solve the sparse regression problem arising from the practical implementation of SINDy, and show that cross validation is an essential tool to determine the right level of sparsity. We demonstrate the proposed methodology on two test systems, namely, the diffusion in a one-dimensional potential, and the projected dynamics of a two-dimensional diffusion process.
Key facts. Cited by 76 papers in the map (data through 7 Oct 2026). First posted on arXiv 6 Dec 2017.
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Citing papers per year: 2021: 13; 2022: 14; 2023: 21; 2024: 9; 2025: 10; 2026: 9.
76 papers.
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- 2021PySINDy: A comprehensive Python package for robust sparse system identificationcited by 88
- 2022Discovering Governing Equations from Partial Measurements with Deep Delay Autoencoderscited by 58
- 2021Deeptime: a Python library for machine learning dynamical models from time series datacited by 36
- 2021Learning Mean-Field Equations from Particle Data Using WSINDycited by 29
- 2022Learning Sparse Nonlinear Dynamics via Mixed-Integer Optimizationcited by 29
- 2021Structure-preserving Sparse Identification of Nonlinear Dynamics for Data-driven Modelingcited by 27
- 2021PDE-READ: Human-readable Partial Differential Equation Discovery using Deep Learningcited by 24
- 2022Bayesian autoencoders for data-driven discovery of coordinates, governing equations and fundamental constantscited by 24
- 2023Learning Stochastic Dynamical System via Flow Map Operatorcited by 24
- 2021Robust discovery of partial differential equations in complex situationscited by 21
- 2023Benchmarking sparse system identification with low-dimensional chaoscited by 19
- 2022Discovery of partial differential equations from highly noisy and sparse data with physics-informed information criterioncited by 16
38 more
- 2021A toolkit for data-driven discovery of governing equations in high-noise regimescited by 15
- 2023Convergence of uncertainty estimates in Ensemble and Bayesian sparse model discoverycited by 15
- 2022Online Weak-form Sparse Identification of Partial Differential Equationscited by 13
- 2023Learning About Structural Errors in Models of Complex Dynamical Systemscited by 13
- 2024ADAM-SINDy: An Efficient Optimization Framework for Parameterized Nonlinear Dynamical System Identificationcited by 10
- 2022Accurate Machine Learned Quantum-Mechanical Force Fields for Biomolecular Simulationscited by 9
- 2021Extracting stochastic dynamical systems with α-stable L'evy noise from datacited by 8
- 2022A Causality-Based Learning Approach for Discovering the Underlying Dynamics of Complex Systems from Partial Observations with Stochastic Parameterizationcited by 8
- 2021Extracting Governing Laws from Sample Path Data of Non-Gaussian Stochastic Dynamical Systemscited by 7
- 2022D-CIPHER: Discovery of Closed-form Partial Differential Equationscited by 7
- 2023OKRidge: Scalable Optimal k-Sparse Ridge Regressioncited by 7
- 2023Detach-ROCKET: Sequential feature selection for time series classification with random convolutional kernelscited by 7
- 2023HyperSINDy: Deep Generative Modeling of Nonlinear Stochastic Governing Equationscited by 7
- 2025In-Context Learning of Stochastic Differential Equations with Foundation Inference Modelscited by 7
- 2023Discovering stochastic partial differential equations from limited data using variational Bayes inferencecited by 6
- 2023Equivariance and partial observations in Koopman operator theory for partial differential equationscited by 6
- 2023A Robust SINDy Approach by Combining Neural Networks and an Integral Formcited by 6
- 2025Data assimilation and discrepancy modeling with shallow recurrent decoderscited by 6
- 2021Deep Learning of Conjugate Mappingscited by 5
- 2022Learning Effective SDEs from Brownian Dynamics Simulations of Colloidal Particlescited by 5
- 2022MAntRA: A framework for model agnostic reliability analysiscited by 5
- 2021Control of Stochastic Quantum Dynamics by Differentiable Programmingcited by 4
- 2021Bayesian data-driven discovery of partial differential equations with variable coefficientscited by 4
- 2022Model-Based Reinforcement Learning with SINDycited by 4
- 2023Symbolic Regression on Sparse and Noisy Data with Gaussian Processescited by 4
- 2024Modeling Latent Non-Linear Dynamical System over Time Seriescited by 4
- 2022Machine Learning in Heterogeneous Porous Materialscited by 3
- 2023Discovering interpretable Lagrangian of dynamical systems from datacited by 3
- 2023Tasks Makyth Models: Machine Learning Assisted Surrogates for Tipping Pointscited by 3
- 2023Measurement-driven neural-network training for integrated magnetic tunnel junction arrayscited by 3
- 2024Learning dynamical systems from data: Gradient-based dictionary optimizationcited by 3
- 2026Symbolic--KAN: Kolmogorov-Arnold Networks with Discrete Symbolic Structure for Interpretable Learningcited by 3
- 2023Reservoir Computing with Error Correction: Long-term Behaviors of Stochastic Dynamical Systemscited by 2
- 2023Data-Driven Model Selections of Second-Order Particle Dynamics via Integrating Gaussian Processes with Low-Dimensional Interacting Structurescited by 2
- 2024GN-SINDy: Greedy Sampling Neural Network in Sparse Identification of Nonlinear Partial Differential Equationscited by 2
- 2024Minimum Reduced-Order Models via Causal Inferencecited by 2
- 2026Data-driven sparse identification of governing PDEs via knockoff filters and multi-criteria trade-offscited by 2
- 2021Uncovering Closed-form Governing Equations of Nonlinear Dynamics from Videoscited by 1
50 most cited of 76 All 76 (JSON)
- 2026An Introduction to Sparse Identification of Nonlinear Dynamics for Engineering Applications16 Jul 2026
- 2026First-Order Trajectory Matching: Fast Ensemble Predictions of Chaotic, Turbulent, Stochastic Systems9 Jun 2026
- 2026Data-driven sparse identification of governing PDEs via knockoff filters and multi-criteria trade-offs26 May 2026
- 2026Tensor-based computation of the Koopman generator via operator logarithm9 Apr 2026
- 2026A machine learning framework for uncovering stochastic nonlinear dynamics from noisy data7 Apr 2026
- 2026Symbolic--KAN: Kolmogorov-Arnold Networks with Discrete Symbolic Structure for Interpretable Learning25 Mar 2026
- 2026Data-Driven Weak-form Discovery of Stochastic Systems21 Mar 2026
- 2026Stochastic Port-Hamiltonian Neural Networks: Universal Approximation with Passivity Guarantees10 Mar 2026
- 2026Nonlocal Kramers-Moyal formulas and data-driven discovery of stochastic dynamical systems with multiplicative L'evy noise27 Jan 2026
- 2025From STLS to Projection-based Dictionary Selection in Sparse Regression for System Identification16 Dec 2025
- 2025Data assimilation and discrepancy modeling with shallow recurrent decoders1 Dec 2025
- 2025Simulation-free Structure Learning for Stochastic Population Dynamics18 Oct 2025
38 more
- 2025Data-Driven Discovery and Formulation Refines the Quasi-Steady Model of Flapping-Wing Aerodynamics26 Aug 2025
- 2025A Sparse Bayesian Learning Algorithm for Estimation of Interaction Kernels in Motsch-Tadmor Model11 May 2025
- 2025Optimizing Hard Thresholding for Sparse Model Discovery28 Apr 2025
- 2025In-Context Learning of Stochastic Differential Equations with Foundation Inference Models26 Feb 2025
- 2025Principled model selection for stochastic dynamics17 Jan 2025
- 2025Data-driven system identification using quadratic embeddings of nonlinear dynamics14 Jan 2025
- 2025A Bayesian Approach for Discovering Time- Delayed Differential Equation from Data6 Jan 2025
- 2024Modeling Latent Non-Linear Dynamical System over Time Series11 Dec 2024
- 2024Learning dynamical systems from data: Gradient-based dictionary optimization7 Nov 2024
- 2024ADAM-SINDy: An Efficient Optimization Framework for Parameterized Nonlinear Dynamical System Identification21 Oct 2024
- 2024An evolutionary approach for discovering non-Gaussian stochastic dynamical systems based on nonlocal Kramers-Moyal formulas29 Sep 2024
- 2024Quasi-potential and drift decomposition in stochastic systems by sparse identification10 Sep 2024
- 2024Discovering governing equation in structural dynamics from acceleration-only measurements18 Jul 2024
- 2024Minimum Reduced-Order Models via Causal Inference29 Jun 2024
- 2024GN-SINDy: Greedy Sampling Neural Network in Sparse Identification of Nonlinear Partial Differential Equations14 May 2024
- 2024Weak Collocation Regression for Inferring Stochastic Dynamics with L'evy Noise13 Mar 2024
- 2023Learning About Structural Errors in Models of Complex Dynamical Systems29 Dec 2023
- 2023Measurement-driven neural-network training for integrated magnetic tunnel junction arrays11 Dec 2023
- 2023Data-Driven Model Selections of Second-Order Particle Dynamics via Integrating Gaussian Processes with Low-Dimensional Interacting Structures1 Nov 2023
- 2023HyperSINDy: Deep Generative Modeling of Nonlinear Stochastic Governing Equations7 Oct 2023
- 2023Detach-ROCKET: Sequential feature selection for time series classification with random convolutional kernels25 Sep 2023
- 2023Tasks Makyth Models: Machine Learning Assisted Surrogates for Tipping Points25 Sep 2023
- 2023Symbolic Regression on Sparse and Noisy Data with Gaussian Processes20 Sep 2023
- 2023A Robust SINDy Approach by Combining Neural Networks and an Integral Form13 Sep 2023
- 2023Exact identification of nonlinear dynamical systems by Trimmed Lasso3 Aug 2023
- 2023Equivariance and partial observations in Koopman operator theory for partial differential equations28 Jul 2023
- 2023Discovering stochastic partial differential equations from limited data using variational Bayes inference28 Jun 2023
- 2023Learning Stochastic Dynamical System via Flow Map Operator5 May 2023
- 2023Reservoir Computing with Error Correction: Long-term Behaviors of Stochastic Dynamical Systems1 May 2023
- 2023OKRidge: Scalable Optimal k-Sparse Ridge Regression13 Apr 2023
- 2023Geometric constraints improve inference of sparsely observed stochastic dynamics2 Apr 2023
- 2023Physics Symbolic Learner for Discovering Ground-Motion Models Via NGA-West2 Database23 Mar 2023
- 2023Discovering mesoscopic descriptions of collective movement with neural stochastic modelling17 Mar 2023
- 2023Discovering interpretable Lagrangian of dynamical systems from data9 Feb 2023
- 2023Benchmarking sparse system identification with low-dimensional chaos4 Feb 2023
- 2023Convergence of uncertainty estimates in Ensemble and Bayesian sparse model discovery30 Jan 2023
- 2023Geometric path augmentation for inference of sparsely observed stochastic nonlinear systems19 Jan 2023
- 2022MAntRA: A framework for model agnostic reliability analysis13 Dec 2022
50 newest of 76 All 76 (JSON)
- 2021PySINDy: A comprehensive Python package for robust sparse system identificationcited by 88
- 2022Discovering Governing Equations from Partial Measurements with Deep Delay Autoencoderscited by 58
- 2021Deeptime: a Python library for machine learning dynamical models from time series datacited by 36
- 2021Learning Mean-Field Equations from Particle Data Using WSINDycited by 29
- 2022Learning Sparse Nonlinear Dynamics via Mixed-Integer Optimizationcited by 29
- 2021Structure-preserving Sparse Identification of Nonlinear Dynamics for Data-driven Modelingcited by 27
- 2021PDE-READ: Human-readable Partial Differential Equation Discovery using Deep Learningcited by 24
- 2022Bayesian autoencoders for data-driven discovery of coordinates, governing equations and fundamental constantscited by 24
- 2023Learning Stochastic Dynamical System via Flow Map Operatorcited by 24
- 2021Robust discovery of partial differential equations in complex situationscited by 21
- 2023Benchmarking sparse system identification with low-dimensional chaoscited by 19
- 2022Discovery of partial differential equations from highly noisy and sparse data with physics-informed information criterioncited by 16
12 most cited of 76 All 76 (JSON)
- 2026An Introduction to Sparse Identification of Nonlinear Dynamics for Engineering Applications16 Jul 2026
- 2026First-Order Trajectory Matching: Fast Ensemble Predictions of Chaotic, Turbulent, Stochastic Systems9 Jun 2026
- 2026Data-driven sparse identification of governing PDEs via knockoff filters and multi-criteria trade-offs26 May 2026
- 2026Tensor-based computation of the Koopman generator via operator logarithm9 Apr 2026
- 2026A machine learning framework for uncovering stochastic nonlinear dynamics from noisy data7 Apr 2026
- 2026Symbolic--KAN: Kolmogorov-Arnold Networks with Discrete Symbolic Structure for Interpretable Learning25 Mar 2026
- 2026Data-Driven Weak-form Discovery of Stochastic Systems21 Mar 2026
- 2026Stochastic Port-Hamiltonian Neural Networks: Universal Approximation with Passivity Guarantees10 Mar 2026
- 2026Nonlocal Kramers-Moyal formulas and data-driven discovery of stochastic dynamical systems with multiplicative L'evy noise27 Jan 2026
- 2025From STLS to Projection-based Dictionary Selection in Sparse Regression for System Identification16 Dec 2025
- 2025Data assimilation and discrepancy modeling with shallow recurrent decoders1 Dec 2025
- 2025Simulation-free Structure Learning for Stochastic Population Dynamics18 Oct 2025
12 newest of 76 All 76 (JSON)