Deep Learning for Medical Image Analysis
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Abstract (arXiv)
This report describes my research activities in the Hasso Plattner Institute and summarizes my Ph.D. plan and several novels, end-to-end trainable approaches for analyzing medical images using deep learning algorithm. In this report, as an example, we explore different novel methods based on deep learning for brain abnormality detection, recognition, and segmentation. This report prepared for the doctoral consortium in the AIME-2017 conference.
Key facts. Cited by 399 papers in the map (data through 7 Oct 2026). First posted on arXiv 17 Aug 2017.
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Citing papers per year: 2021: 75; 2022: 60; 2023: 80; 2024: 66; 2025: 78; 2026: 40.
399 papers.
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- 2021Domain Adaptation for Medical Image Analysis: A Surveycited by 351
- 2022Brain Imaging Generation with Latent Diffusion Modelscited by 267
- 2022Transformers in Medical Imaging: A Surveycited by 245
- 2023Segment Anything in Medical Imagescited by 226
- 2024U-KAN Makes Strong Backbone for Medical Image Segmentation and Generationcited by 176
- 2021Causality-inspired Single-source Domain Generalization for Medical Image Segmentationcited by 118
- 2023ChatCAD: Interactive Computer-Aided Diagnosis on Medical Image using Large Language Modelscited by 116
- 2022SimpleClick: Interactive Image Segmentation with Simple Vision Transformerscited by 109
- 2021Recent advances and clinical applications of deep learning in medical image analysiscited by 104
- 2021Unbox the Black-box for the Medical Explainable AI via Multi-modal and Multi-centre Data Fusion: A Mini-Review, Two Showcases and Beyondcited by 75
- 2021Graph-Based Deep Learning for Medical Diagnosis and Analysis: Past, Present and Futurecited by 67
- 2021Recurrent Mask Refinement for Few-Shot Medical Image Segmentationcited by 63
38 more
- 2021Learning to Synthesize Programs as Interpretable and Generalizable Policiescited by 59
- 2022BoostMIS: Boosting Medical Image Semi-supervised Learning with Adaptive Pseudo Labeling and Informative Active Annotationcited by 54
- 2021MSRF-Net: A Multi-Scale Residual Fusion Network for Biomedical Image Segmentationcited by 53
- 2023MindfulDiary: Harnessing Large Language Model to Support Psychiatric Patients' Journalingcited by 50
- 2023Patched Diffusion Models for Unsupervised Anomaly Detection in Brain MRIcited by 45
- 2024nnMamba: 3D Biomedical Image Segmentation, Classification and Landmark Detection with State Space Modelcited by 45
- 2022PseudoClick: Interactive Image Segmentation with Click Imitationcited by 42
- 2021A Peek Into the Reasoning of Neural Networks: Interpreting with Structural Visual Conceptscited by 33
- 2023MedShapeNet -- A Large-Scale Dataset of 3D Medical Shapes for Computer Visioncited by 31
- 2024Privacy Leakage on DNNs: A Survey of Model Inversion Attacks and Defensescited by 30
- 2024AutoGluon-Multimodal (AutoMM): Supercharging Multimodal AutoML with Foundation Modelscited by 29
- 2021iSegFormer: Interactive Segmentation via Transformers with Application to 3D Knee MR Imagescited by 27
- 2024From Risk to Uncertainty: Generating Predictive Uncertainty Measures via Bayesian Estimationcited by 27
- 2021More than Encoder: Introducing Transformer Decoder to Upsamplecited by 26
- 2021Superpixel-guided Iterative Learning from Noisy Labels for Medical Image Segmentationcited by 25
- 2023Unsupervised Anomaly Detection in Medical Images Using Masked Diffusion Modelcited by 25
- 2023MIS-FM: 3D Medical Image Segmentation using Foundation Models Pretrained on a Large-Scale Unannotated Datasetcited by 25
- 2021Learning Hierarchical Attention for Weakly-supervised Chest X-Ray Abnormality Localization and Diagnosiscited by 24
- 2023A Review on Explainable Artificial Intelligence for Healthcare: Why, How, and When?cited by 24
- 2024Bootstrapping Chest CT Image Understanding by Distilling Knowledge from X-ray Expert Modelscited by 24
- 2026Medical SAM3: A Foundation Model for Universal Prompt-Driven Medical Image Segmentationcited by 23
- 2022Diffractive all-optical computing for quantitative phase imagingcited by 22
- 2021VinDr-SpineXR: A deep learning framework for spinal lesions detection and classification from radiographscited by 19
- 2022Evaluating Explainable AI on a Multi-Modal Medical Imaging Task: Can Existing Algorithms Fulfill Clinical Requirements?cited by 19
- 2022GATE: Graph CCA for Temporal SElf-supervised Learning for Label-efficient fMRI Analysiscited by 19
- 2023Advancing Volumetric Medical Image Segmentation via Global-Local Masked Autoencodercited by 19
- 2024Fr'echet Radiomic Distance (FRD): A Versatile Metric for Comparing Medical Imaging Datasetscited by 19
- 2021VoxelHop: Successive Subspace Learning for ALS Disease Classification Using Structural MRIcited by 18
- 2022Contrastive Semi-supervised Learning for Domain Adaptive Segmentation Across Similar Anatomical Structurescited by 18
- 2023Synthetic Augmentation with Large-scale Unconditional Pre-trainingcited by 18
- 2021BDD4BNN: A BDD-based Quantitative Analysis Framework for Binarized Neural Networkscited by 17
- 2024MiM: Mask in Mask Self-Supervised Pre-Training for 3D Medical Image Analysiscited by 17
- 2021Domain Composition and Attention for Unseen-Domain Generalizable Medical Image Segmentationcited by 16
- 2024A Comprehensive Survey of Convolutions in Deep Learning: Applications, Challenges, and Future Trendscited by 16
- 2021A New Semi-supervised Learning Benchmark for Classifying View and Diagnosing Aortic Stenosis from Echocardiogramscited by 15
- 2021Uncertainty-aware GAN with Adaptive Loss for Robust MRI Image Enhancementcited by 15
- 2023Zero-shot Causal Graph Extrapolation from Text via LLMscited by 15
- 2024The Impact of Scanner Domain Shift on Deep Learning Performance in Medical Imaging: an Experimental Studycited by 15
50 most cited of 399 All 399 (JSON)
- 2026Explainability from Training with Applications to TCR-Epitope Prediction28 Sep 2026
- 2026Evaluating Single and Multi-Omics Based Explainable Artificial Intelligence (MOXAI) for Molecular Subclass Classification of Adult-Type Diffuse Gliomas26 Sep 2026
- 2026AlignUS: MRI-Guided Ultrasound Representation Learning for ALS Classification from Tongue Images14 Sep 2026
- 2026CFR-Net:Collaborative Feature Refinement Network for Medical Image Anomaly Detection13 Jul 2026
- 2026From Raw Segmentations to Simulation-Ready Cardiac Meshes: An Automated Framework for Anatomical Reconstruction and Virtual Cohort Generation29 Jun 2026
- 2026Deep Neural Networks with Ordinal Loss for Medical Applications24 Jun 2026
- 2026SketchXplain: Intuitive Visual Explanations of Image Classifiers with Sketches16 Jun 2026
- 2026HadBalance: A Plug-and-Play Unified Global Geometric Prior Framework for Generalizable Biomedical Segmentation14 Jun 2026
- 2026CoMNet: A MedNeXt-CorrDiff Framework for Multi-Site Brain Tumor Segmentation13 Jun 2026
- 2026Hallucination in Medical Imaging AI: A Cross-Modality Analytical Framework for Taxonomy, Detection, and Mitigation under Regulatory Constraints11 Jun 2026
- 2026CoralBay: A Self-Supervised CT Foundation Model2 Jun 2026
- 2026Benchmarking Convolutional, Transformer, Hybrid, and Vision Language Models for Multi Disease Retinal Screening25 May 2026
38 more
- 2026NeuroAgent: LLM Agents for Multimodal Neuroimaging Analysis and Research7 May 2026
- 2026Multi-Dataset Cross-Domain Knowledge Distillation for Unified Medical Image Segmentation, Classification, and Detection2 May 2026
- 2026Federated Medical Image Classification under Class and Domain Imbalance exploiting Synthetic Sample Generation29 Apr 2026
- 2026Toward Multimodal Conversational AI for Age-Related Macular Degeneration28 Apr 2026
- 2026Risk-Aware Robust Learning: Reducing Clinical Risk under Label Noise in Medical Image Classification26 Apr 2026
- 2026Does Machine Unlearning Preserve Clinical Safety? A Risk Analysis for Medical Image Classification26 Apr 2026
- 2026CSC: Turning the Adversary's Poison against Itself23 Apr 2026
- 2026Predicting Blastocyst Formation in IVF: Integrating DINOv2 and Attention-Based LSTM on Time-Lapse Embryo Images14 Apr 2026
- 2026USCNet: Transformer-Based Multimodal Fusion with Segmentation Guidance for Urolithiasis Classification8 Apr 2026
- 2026How and why does deep ensemble coupled with transfer learning increase performance in bipolar disorder and schizophrenia classification?2 Apr 2026
- 2026PhyDCM: A Reproducible Open-Source Framework for AI-Assisted Brain Tumor Classification from Multi-Sequence MRI25 Mar 2026
- 2026Gastric-X: A Multimodal Multi-Phase Benchmark Dataset for Advancing Vision-Language Models in Gastric Cancer Analysis19 Mar 2026
- 2026Concept-to-Pixel: Prompt-Free Universal Medical Image Segmentation18 Mar 2026
- 2026Standardizing Medical Images at Scale for AI16 Mar 2026
- 2026CT-VDETR: Semi-supervised 3D Trauma Detection in Computed Tomography (CT) scans using Dense Vertex Relative Position Encoding12 Mar 2026
- 2026Comparative Evaluation of Traditional Methods and Deep Learning for Brain Glioma Imaging. Review Paper5 Mar 2026
- 2026Contextual Invertible World Models: A Neuro-Symbolic Agentic Framework for Colorectal Cancer Drug Response1 Mar 2026
- 2026Early Risk Stratification of Dosing Errors in Clinical Trials Using Machine Learning25 Feb 2026
- 2026Artefact-Aware Fungal Detection in Dermatophytosis: A Real-Time Transformer-Based Approach for KOH Microscopy22 Feb 2026
- 2026Effect of Patch Size on Fine-Tuning Vision Transformers in Two-Dimensional and Three-Dimensional Medical Image Classification20 Feb 2026
- 2026Synthesis of Late Gadolinium Enhancement Images via Implicit Neural Representations for Cardiac Scar Segmentation12 Feb 2026
- 2026Universality Reconsidered: Rethinking the Validation of Foundation Models for General-Purpose 3D Medical Segmentation7 Feb 2026
- 2026Evaluating Deep Learning-Based Nerve Segmentation in Brachial Plexus Ultrasound Under Realistic Data Constraints31 Jan 2026
- 2026The Triangle of Similarity: A Multi-Faceted Framework for Comparing Neural Network Representations23 Jan 2026
- 2026Medical SAM3: A Foundation Model for Universal Prompt-Driven Medical Image Segmentation15 Jan 2026
- 2026Robust Multicentre Detection and Classification of Colorectal Liver Metastases on CT: Application of Foundation Models12 Jan 2026
- 2026FlowLet: Conditional 3D Brain MRI Synthesis using Wavelet Flow Matching8 Jan 2026
- 2026TokenSeg: Efficient 3D Medical Image Segmentation via Hierarchical Visual Token Compression8 Jan 2026
- 2025ReX-MLE: The Autonomous Agent Benchmark for Medical Imaging Challenges19 Dec 2025
- 2025LayerPipe2: Multistage Pipelining and Weight Recompute via Improved Exponential Moving Average for Training Neural Networks9 Dec 2025
- 2025Enhanced Chest Disease Classification Using an Improved CheXNet Framework with EfficientNetV2-M and Optimization-Driven Learning8 Dec 2025
- 2025Hard Spatial Gating for Precision-Driven Brain Metastasis Segmentation: Addressing the Over-Segmentation Paradox in Deep Attention Networks27 Nov 2025
- 2025DE-KAN: A Kolmogorov Arnold Network with Dual Encoder for accurate 2D Teeth Segmentation23 Nov 2025
- 2025A Diversity-optimized Deep Ensemble Approach for Accurate Plant Leaf Disease Detection21 Nov 2025
- 2025Enhancing Nuclear Reactor Core Simulation through Data-Based Surrogate Models20 Nov 2025
- 2025MedDChest: A Content-Aware Multimodal Foundational Vision Model for Thoracic Imaging6 Nov 2025
- 2025Generative Adversarial Synthesis and Deep Feature Discrimination of Brain Tumor MRI Images3 Nov 2025
- 2025Unsupervised Domain Adaptation via Similarity-based Prototypes for Cross-Modality Segmentation23 Oct 2025
50 newest of 399 All 399 (JSON)
- 2022Brain Imaging Generation with Latent Diffusion Modelscited by 267
- 2023Patched Diffusion Models for Unsupervised Anomaly Detection in Brain MRIcited by 45
- 2023Unsupervised Anomaly Detection in Medical Images Using Masked Diffusion Modelcited by 25
- 2024Text2Street: Controllable Text-to-image Generation for Street Viewscited by 13
- 2023DataElixir: Purifying Poisoned Dataset to Mitigate Backdoor Attacks via Diffusion Modelscited by 9
- 2025Prompt to Polyp: Medical Text-Conditioned Image Synthesis with Diffusion Modelscited by 5
- 2026FlowLet: Conditional 3D Brain MRI Synthesis using Wavelet Flow Matchingcited by 5
- 2024Inpainting Pathology in Lumbar Spine MRI with Latent Diffusioncited by 3
- 2024Addressing Small and Imbalanced Medical Image Datasets Using Generative Models: A Comparative Study of DDPM and PGGANs with Random and Greedy K Samplingcited by 2
- 2025DiN: Diffusion Model for Robust Medical VQA with Semantic Noisy Labelscited by 2
- 2026Synthesis of Late Gadolinium Enhancement Images via Implicit Neural Representations for Cardiac Scar Segmentationcited by 0
- 2026Synthesis of Late Gadolinium Enhancement Images via Implicit Neural Representations for Cardiac Scar Segmentation12 Feb 2026
- 2026FlowLet: Conditional 3D Brain MRI Synthesis using Wavelet Flow Matching8 Jan 2026
- 2025Prompt to Polyp: Medical Text-Conditioned Image Synthesis with Diffusion Models8 May 2025
- 2025DiN: Diffusion Model for Robust Medical VQA with Semantic Noisy Labels24 Mar 2025
- 2024Addressing Small and Imbalanced Medical Image Datasets Using Generative Models: A Comparative Study of DDPM and PGGANs with Random and Greedy K Sampling17 Dec 2024
- 2024Inpainting Pathology in Lumbar Spine MRI with Latent Diffusion4 Jun 2024
- 2024Text2Street: Controllable Text-to-image Generation for Street Views7 Feb 2024
- 2023DataElixir: Purifying Poisoned Dataset to Mitigate Backdoor Attacks via Diffusion Models18 Dec 2023
- 2023Unsupervised Anomaly Detection in Medical Images Using Masked Diffusion Model31 May 2023
- 2023Patched Diffusion Models for Unsupervised Anomaly Detection in Brain MRI7 Mar 2023
- 2022Brain Imaging Generation with Latent Diffusion Models15 Sep 2022
- 2025DCFormer: Efficient 3D Vision-Language Modeling with Decomposed Convolutionscited by 10
- 2025Taming Vision-Language Models for Medical Image Analysis: A Comprehensive Reviewcited by 9
- 2024RadCLIP: Enhancing Radiologic Image Analysis through Contrastive Language-Image Pre-trainingcited by 8
- 2025MedVista3D: Vision-Language Modeling for Reducing Diagnostic Errors in 3D CT Disease Detection, Understanding and Reportingcited by 4
- 2025Adversarial Robustness Analysis of Vision-Language Models in Medical Image Segmentationcited by 2
- 2025See-in-Pairs: Reference Image-Guided Comparative Vision-Language Models for Medical Diagnosiscited by 2
- 2025A Lightweight Large Vision-language Model for Multimodal Medical Imagescited by 0
- 2026Effect of Patch Size on Fine-Tuning Vision Transformers in Two-Dimensional and Three-Dimensional Medical Image Classificationcited by 0
- 2026Benchmarking Convolutional, Transformer, Hybrid, and Vision Language Models for Multi Disease Retinal Screeningcited by 0
- 2026Benchmarking Convolutional, Transformer, Hybrid, and Vision Language Models for Multi Disease Retinal Screening25 May 2026
- 2026Effect of Patch Size on Fine-Tuning Vision Transformers in Two-Dimensional and Three-Dimensional Medical Image Classification20 Feb 2026
- 2025MedVista3D: Vision-Language Modeling for Reducing Diagnostic Errors in 3D CT Disease Detection, Understanding and Reporting4 Sep 2025
- 2025Taming Vision-Language Models for Medical Image Analysis: A Comprehensive Review23 Jun 2025
- 2025See-in-Pairs: Reference Image-Guided Comparative Vision-Language Models for Medical Diagnosis22 Jun 2025
- 2025Adversarial Robustness Analysis of Vision-Language Models in Medical Image Segmentation5 May 2025
- 2025A Lightweight Large Vision-language Model for Multimodal Medical Images8 Apr 2025
- 2025DCFormer: Efficient 3D Vision-Language Modeling with Decomposed Convolutions7 Feb 2025
- 2024RadCLIP: Enhancing Radiologic Image Analysis through Contrastive Language-Image Pre-training15 Mar 2024
- 2025KM-UNet KAN Mamba UNet for medical image segmentationcited by 0
- 2025KM-UNet KAN Mamba UNet for medical image segmentation5 Jan 2025
- 2021Domain Adaptation for Medical Image Analysis: A Surveycited by 351
- 2022Transformers in Medical Imaging: A Surveycited by 245
- 2023Segment Anything in Medical Imagescited by 226
- 2024U-KAN Makes Strong Backbone for Medical Image Segmentation and Generationcited by 176
- 2021Causality-inspired Single-source Domain Generalization for Medical Image Segmentationcited by 118
- 2023ChatCAD: Interactive Computer-Aided Diagnosis on Medical Image using Large Language Modelscited by 116
- 2022SimpleClick: Interactive Image Segmentation with Simple Vision Transformerscited by 109
- 2021Recent advances and clinical applications of deep learning in medical image analysiscited by 104
- 2021Unbox the Black-box for the Medical Explainable AI via Multi-modal and Multi-centre Data Fusion: A Mini-Review, Two Showcases and Beyondcited by 75
- 2021Graph-Based Deep Learning for Medical Diagnosis and Analysis: Past, Present and Futurecited by 67
- 2021Recurrent Mask Refinement for Few-Shot Medical Image Segmentationcited by 63
- 2021Learning to Synthesize Programs as Interpretable and Generalizable Policiescited by 59
12 most cited of 371 All 371 (JSON)
- 2026Explainability from Training with Applications to TCR-Epitope Prediction28 Sep 2026
- 2026Evaluating Single and Multi-Omics Based Explainable Artificial Intelligence (MOXAI) for Molecular Subclass Classification of Adult-Type Diffuse Gliomas26 Sep 2026
- 2026AlignUS: MRI-Guided Ultrasound Representation Learning for ALS Classification from Tongue Images14 Sep 2026
- 2026CFR-Net:Collaborative Feature Refinement Network for Medical Image Anomaly Detection13 Jul 2026
- 2026From Raw Segmentations to Simulation-Ready Cardiac Meshes: An Automated Framework for Anatomical Reconstruction and Virtual Cohort Generation29 Jun 2026
- 2026Deep Neural Networks with Ordinal Loss for Medical Applications24 Jun 2026
- 2026SketchXplain: Intuitive Visual Explanations of Image Classifiers with Sketches16 Jun 2026
- 2026HadBalance: A Plug-and-Play Unified Global Geometric Prior Framework for Generalizable Biomedical Segmentation14 Jun 2026
- 2026CoMNet: A MedNeXt-CorrDiff Framework for Multi-Site Brain Tumor Segmentation13 Jun 2026
- 2026Hallucination in Medical Imaging AI: A Cross-Modality Analytical Framework for Taxonomy, Detection, and Mitigation under Regulatory Constraints11 Jun 2026
- 2026CoralBay: A Self-Supervised CT Foundation Model2 Jun 2026
- 2026Multi-Dataset Cross-Domain Knowledge Distillation for Unified Medical Image Segmentation, Classification, and Detection2 May 2026
12 newest of 371 All 371 (JSON)