High-dimensional learning of linear causal networks via inverse covariance estimation
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Abstract (arXiv)
We establish a new framework for statistical estimation of directed acyclic graphs (DAGs) when data are generated from a linear, possibly non-Gaussian structural equation model. Our framework consists of two parts: (1) inferring the moralized graph from the support of the inverse covariance matrix; and (2) selecting the best-scoring graph amongst DAGs that are consistent with the moralized graph. We show that when the error variances are known or estimated to close enough precision, the true DAG is the unique minimizer of the score computed using the reweighted squared l_2-loss. Our population-level results have implications for the identifiability of linear SEMs when the error covariances are specified up to a constant multiple. On the statistical side, we establish rigorous conditions for high-dimensional consistency of our two-part algorithm, defined in terms of a "gap" between the true DAG and the next best candidate. Finally, we demonstrate that dynamic programming may be used to select the optimal DAG in linear time when the treewidth of the moralized graph is bounded.
Key facts. Cited by 86 papers in the map (data through 7 Oct 2026). First posted on arXiv 14 Nov 2013.
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Citing papers per year: 2021: 11; 2022: 13; 2023: 26; 2024: 15; 2025: 11; 2026: 10.
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- 2021Beware of the Simulated DAG! Causal Discovery Benchmarks May Be Easy To Gamecited by 159
- 2022DAGMA: Learning DAGs via M-matrices and a Log-Determinant Acyclicity Characterizationcited by 135
- 2022Score matching enables causal discovery of nonlinear additive noise modelscited by 108
- 2022Deep End-to-end Causal Inferencecited by 93
- 2024Causal Representation Learning from Multiple Distributions: A General Settingcited by 67
- 2021Unsuitability of NOTEARS for Causal Graph Discoverycited by 46
- 2023Structure Learning with Continuous Optimization: A Sober Look and Beyondcited by 34
- 2023Stable Differentiable Causal Discoverycited by 30
- 2023A Scale-Invariant Sorting Criterion to Find a Causal Order in Additive Noise Modelscited by 28
- 2022Truncated Matrix Power Iteration for Differentiable DAG Learningcited by 23
- 2022Reliable Causal Discovery with Improved Exact Search and Weaker Assumptionscited by 19
- 2024Sample, estimate, aggregate: A recipe for causal discovery foundation modelscited by 19
38 more
- 2023Optimizing NOTEARS Objectives via Topological Swapscited by 17
- 2024Standardizing Structural Causal Modelscited by 17
- 2021Simultaneous Missing Value Imputation and Structure Learning with Groupscited by 16
- 2022Optimal estimation of Gaussian DAG modelscited by 14
- 2021Entropic Causal Inference: Identifiability and Finite Sample Resultscited by 12
- 2022Causal Fourier Analysis on Directed Acyclic Graphs and Posetscited by 12
- 2023CoLiDE: Concomitant Linear DAG Estimationcited by 12
- 2023Bivariate Causal Discovery using Bayesian Model Selectioncited by 11
- 2024Ordering-Based Causal Discovery for Linear and Nonlinear Relationscited by 11
- 2021Structure learning in polynomial time: Greedy algorithms, Bregman information, and exponential familiescited by 10
- 2023Global Optimality in Bivariate Gradient-based DAG Learningcited by 10
- 2023Constraint-Free Structure Learning with Smooth Acyclic Orientationscited by 10
- 2021Deconfounded Score Method: Scoring DAGs with Dense Unobserved Confoundingcited by 9
- 2023Learning DAGs from Data with Few Root Causescited by 8
- 2024DCILP: A Distributed Approach for Large-Scale Causal Structure Learningcited by 8
- 2022Multiscale Causal Structure Learningcited by 7
- 2023Generalized Precision Matrix for Scalable Estimation of Nonparametric Markov Networkscited by 7
- 2024Local Causal Discovery with Linear non-Gaussian Cyclic Modelscited by 7
- 2024Non-negative Weighted DAG Structure Learningcited by 7
- 2024Markov Equivalence and Consistency in Differentiable Structure Learningcited by 6
- 2021On the Role of Entropy-based Loss for Learning Causal Structures with Continuous Optimizationcited by 5
- 2021A Fast Non-parametric Approach for Local Causal Structure Learningcited by 5
- 2022Directed Acyclic Graph Structure Learning from Dynamic Graphscited by 5
- 2023Boosting Differentiable Causal Discovery via Adaptive Sample Reweightingcited by 5
- 2023iSCAN: Identifying Causal Mechanism Shifts among Nonlinear Additive Noise Modelscited by 5
- 2025Analytic DAG Constraints for Differentiable DAG Learningcited by 5
- 2023Discovering Dynamic Causal Space for DAG Structure Learningcited by 4
- 2025CausalMan: A physics-based simulator for large-scale causalitycited by 4
- 2025The Robustness of Differentiable Causal Discovery in Misspecified Scenarioscited by 4
- 2025BUILD with Precision: Bottom-Up Inference of Linear DAGscited by 4
- 2022Learning Multiscale Non-stationary Causal Structurescited by 3
- 2023dotears: Scalable, consistent DAG estimation using observational and interventional datacited by 3
- 2023Deception by Omission: Using Adversarial Missingness to Poison Causal Structure Learningcited by 3
- 2024Optimal estimation of Gaussian (poly)treescited by 3
- 2024psiDAG: Projected Stochastic Approximation Iteration for DAG Structure Learningcited by 3
- 2025Entropic Causal Inference: Graph Identifiabilitycited by 3
- 2026Exploiting Non-Negativity in DAG Structure Learningcited by 3
- 2023Multi-Fidelity Covariance Estimation in the Log-Euclidean Geometrycited by 2
50 most cited of 86 All 86 (JSON)
- 2026Nonnegative DAG Learning via Concomitant Estimation28 Sep 2026
- 2026Functional Causal Discovery via Conditional Covariance Ordering23 Sep 2026
- 2026How Many Samples Are Needed to Determine Causal Direction? Sharp Minimax Bounds for Bivariate LiNGAM16 Aug 2026
- 2026Contrast-Free ICA and Causal Inference via Wasserstein Distances to the Gaussian14 Jul 2026
- 2026Concomitant DAG Learning: On the Roles of Noise Adaptivity, Sparsity, and Non-negativity22 May 2026
- 2026Exploiting Non-Negativity in DAG Structure Learning19 May 2026
- 2026Relaxed Sparsest-Permutation Formulation for Causal Discovery at Scale7 May 2026
- 2026Smoothing the Landscape: Causal Structure Learning via Diffusion Denoising Objectives2 Apr 2026
- 2026Efficient Causal Structure Learning via Modular Subgraph Integration28 Jan 2026
- 2026Efficient Differentiable Causal Discovery via Reliable Super-Structure Learning9 Jan 2026
- 2025Causal Discovery with Mixed Latent Confounding via Precision Decomposition31 Dec 2025
- 2025BUILD with Precision: Bottom-Up Inference of Linear DAGs18 Dec 2025
38 more
- 2025Differentially Private and Federated Structure Learning in Bayesian Networks1 Dec 2025
- 2025Higher-Order Causal Structure Learning with Additive Models5 Nov 2025
- 2025The Robustness of Differentiable Causal Discovery in Misspecified Scenarios14 Oct 2025
- 2025Entropic Causal Inference: Graph Identifiability19 Sep 2025
- 2025Consistent Bayesian causal discovery for structural equation models with equal error variances18 Sep 2025
- 2025Optimal structure learning and conditional independence testing8 Jul 2025
- 2025Covariate-dependent Graphical Model Estimation via Neural Networks with Statistical Guarantees23 Apr 2025
- 2025Analytic DAG Constraints for Differentiable DAG Learning24 Mar 2025
- 2025CausalMan: A physics-based simulator for large-scale causality18 Feb 2025
- 2024psiDAG: Projected Stochastic Approximation Iteration for DAG Structure Learning31 Oct 2024
- 2024Revisiting Differentiable Structure Learning: Inconsistency of ℓ1 Penalty and Beyond24 Oct 2024
- 2024Markov Equivalence and Consistency in Differentiable Structure Learning8 Oct 2024
- 2024Ordering-Based Causal Discovery for Linear and Nonlinear Relations8 Oct 2024
- 2024Non-negative Weighted DAG Structure Learning12 Sep 2024
- 2024Simulation-based Benchmarking for Causal Structure Learning in Gene Perturbation Experiments8 Jul 2024
- 2024Greedy equivalence search for nonparametric graphical models25 Jun 2024
- 2024ExDAG: an MIQP Algorithm for Learning DAGs21 Jun 2024
- 2024Standardizing Structural Causal Models17 Jun 2024
- 2024DCILP: A Distributed Approach for Large-Scale Causal Structure Learning15 Jun 2024
- 2024Generalized Criterion for Identifiability of Additive Noise Models Using Majorization8 Apr 2024
- 2024Local Causal Discovery with Linear non-Gaussian Cyclic Models21 Mar 2024
- 2024Optimal estimation of Gaussian (poly)trees9 Feb 2024
- 2024Causal Representation Learning from Multiple Distributions: A General Setting7 Feb 2024
- 2024Sample, estimate, aggregate: A recipe for causal discovery foundation models2 Feb 2024
- 2023Enhancing the Performance of Neural Networks Through Causal Discovery and Integration of Domain Knowledge29 Nov 2023
- 2023Bayesian Approach to Linear Bayesian Networks27 Nov 2023
- 2023Stable Differentiable Causal Discovery17 Nov 2023
- 2023BClean: A Bayesian Data Cleaning System11 Nov 2023
- 2023Distributionally Robust Skeleton Learning of Discrete Bayesian Networks10 Nov 2023
- 2023A Review and Roadmap of Deep Causal Model from Different Causal Structures and Representations2 Nov 2023
- 2023CoLiDE: Concomitant Linear DAG Estimation4 Oct 2023
- 2023Constraint-Free Structure Learning with Smooth Acyclic Orientations15 Sep 2023
- 2023Hierarchical Topological Ordering with Conditional Independence Test for Limited Time Series16 Aug 2023
- 2023Learning Networks from Gaussian Graphical Models and Gaussian Free Fields4 Aug 2023
- 2023Testing Sparsity Assumptions in Bayesian Networks12 Jul 2023
- 2023Global Optimality in Bivariate Gradient-based DAG Learning30 Jun 2023
- 2023iSCAN: Identifying Causal Mechanism Shifts among Nonlinear Additive Noise Models30 Jun 2023
- 2023Bivariate Causal Discovery using Bayesian Model Selection5 Jun 2023
50 newest of 86 All 86 (JSON)
- 2021Beware of the Simulated DAG! Causal Discovery Benchmarks May Be Easy To Gamecited by 159
- 2022DAGMA: Learning DAGs via M-matrices and a Log-Determinant Acyclicity Characterizationcited by 135
- 2022Score matching enables causal discovery of nonlinear additive noise modelscited by 108
- 2022Deep End-to-end Causal Inferencecited by 93
- 2024Causal Representation Learning from Multiple Distributions: A General Settingcited by 67
- 2021Unsuitability of NOTEARS for Causal Graph Discoverycited by 46
- 2023Structure Learning with Continuous Optimization: A Sober Look and Beyondcited by 34
- 2023Stable Differentiable Causal Discoverycited by 30
- 2023A Scale-Invariant Sorting Criterion to Find a Causal Order in Additive Noise Modelscited by 28
- 2022Truncated Matrix Power Iteration for Differentiable DAG Learningcited by 23
- 2022Reliable Causal Discovery with Improved Exact Search and Weaker Assumptionscited by 19
- 2024Sample, estimate, aggregate: A recipe for causal discovery foundation modelscited by 19
12 most cited of 85 All 85 (JSON)
- 2026Nonnegative DAG Learning via Concomitant Estimation28 Sep 2026
- 2026Functional Causal Discovery via Conditional Covariance Ordering23 Sep 2026
- 2026How Many Samples Are Needed to Determine Causal Direction? Sharp Minimax Bounds for Bivariate LiNGAM16 Aug 2026
- 2026Contrast-Free ICA and Causal Inference via Wasserstein Distances to the Gaussian14 Jul 2026
- 2026Concomitant DAG Learning: On the Roles of Noise Adaptivity, Sparsity, and Non-negativity22 May 2026
- 2026Exploiting Non-Negativity in DAG Structure Learning19 May 2026
- 2026Relaxed Sparsest-Permutation Formulation for Causal Discovery at Scale7 May 2026
- 2026Efficient Causal Structure Learning via Modular Subgraph Integration28 Jan 2026
- 2026Efficient Differentiable Causal Discovery via Reliable Super-Structure Learning9 Jan 2026
- 2025Causal Discovery with Mixed Latent Confounding via Precision Decomposition31 Dec 2025
- 2025BUILD with Precision: Bottom-Up Inference of Linear DAGs18 Dec 2025
- 2025Differentially Private and Federated Structure Learning in Bayesian Networks1 Dec 2025
12 newest of 85 All 85 (JSON)