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When Metrics Disagree: A Meta-Analysis of Knowledge-Graph-Completion Model Benchmarking

arXiv 2606.10287 ↗First posted 9 Jun 2026cs.LG cs.CLcited by 0

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Abstract (arXiv)

Evaluating Knowledge Graph Completion (KGC) models remains challenging because standard assessment relies on isolated rank-based metrics such as MRR, Hits@k, and Mean Rank, which often produce conflicting model orderings across datasets. A model that leads on MRR may trail on Hits@1, and strong performance on one dataset may not generalize to another. This fragmentation hinders comparison, enables selective reporting, and obscures real progress. We reframe KGC evaluation as a Multi-Criteria Decision-Making (MCDM) problem and present a meta-analysis of seven aggregators across five tests: consistency, cross-dataset stability, metric independence, robustness under noise, and generalizability. Each test is averaged over leave-one-model-out (LOMO) and leave-one-group-out (LOGO) removals so that reliability reflects aggregator behavior across diverse model subsets. Across tail (h,r,?) and relation (h,?,t) prediction, Pareto-optimal analysis identifies Z-score as the most balanced aggregator, which ranks DualE highest for tail prediction and FMS (Flow-Modulated Scoring) highest for relation prediction. A test-sensitivity analysis using the same removals shows that consistency and stability are largely removal-invariant, while generalizability and independence are the most sensitive. The framework resolves evaluation inconsistencies and offers evidence-based guidance for aggregator selection and model benchmarking in KGC.

Key facts. No citing papers in the map yet (data through 14 Oct 2026). Builds on 11 of its 29 references that are in the map. First posted on arXiv 9 Jun 2026.

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References · 11

  1. 2019RotatE: Knowledge Graph Embedding by Relational Rotation in Complex Spacecited by 898
  2. 2019KG-BERT: BERT for Knowledge Graph Completioncited by 324
  3. 2020A Benchmarking Study of Embedding-based Entity Alignment for Knowledge Graphscited by 120
  4. 2019A Re-evaluation of Knowledge Graph Completion Methodscited by 73
  5. 2017Knowledge Base Completion: Baselines Strike Backcited by 39
  6. 2023KERMIT: Knowledge Graph Completion of Enhanced Relation Modeling with Inverse Transformationcited by 6
  7. 2019A Relational Tucker Decomposition for Multi-Relational Link Predictioncited by 4
  8. 2025MuCo-KGC: Multi-Context-Aware Knowledge Graph Completioncited by 4
  9. 2024ReliK: A Reliability Measure for Knowledge Graph Embeddingscited by 3
  10. 2025KG-EDAS: A Meta-Metric Framework for Evaluating Knowledge Graph Completion Modelscited by 1
  11. 2025How Sharp and Bias-Robust is a Model? Dual Evaluation Perspectives on Knowledge Graph Completioncited by 1

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