Turning Tabular Foundation Models into Graph Foundation Models
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Abstract (arXiv)
While foundation models have revolutionized fields such as natural language processing and computer vision, their potential in graph machine learning remains largely unexplored. One of the key challenges in designing graph foundation models (GFMs) is handling diverse node features that can vary across different graph datasets. While many works on GFMs have focused exclusively on text-attributed graphs, the problem of handling arbitrary features of other types in GFMs has not been fully addressed. However, this problem is not unique to the graph domain, as it also arises in the field of machine learning for tabular data. In this work, motivated by the recent success of tabular foundation models (TFMs) like TabPFNv2 and LimiX, we propose G2T-FM, a simple framework that allows tabular foundation models to be applied to graph node-level tasks. Specifically, G2T-FM augments the original node features with neighborhood feature aggregation, adds structural embeddings, and then applies a TFM to the constructed node representations. Even in the in-context learning setting, our model achieves strong results when combined with a strong TFM, outperforming both prior GFMs and well-tuned GNNs trained from scratch. Moreover, after finetuning, G2T-FM consistently surpasses well-tuned GNN baselines, often by a significant margin. In summary, our paper reveals the potential of a previously overlooked direction: utilizing tabular foundation models for graph machine learning tasks.
Key facts. Cited by 35 papers in the map (data through 14 Oct 2026). Builds on 42 of its 58 references that are in the map. First posted on arXiv 28 Aug 2025.
Builds on
42 of 58 references.
References · 42
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- 2018BERT: Pre-training of Deep Bidirectional Transformers for Language Understandingcited by 40,399
- 2021Learning Transferable Visual Models From Natural Language Supervisioncited by 33,744
- 2020Language Models are Few-Shot Learnerscited by 32,419
- 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,361
- 2017Graph Attention Networkscited by 8,923
- 2017Inductive Representation Learning on Large Graphscited by 6,320
- 2016Layer Normalizationcited by 5,669
- 2016Revisiting Semi-Supervised Learning with Graph Embeddingscited by 976
- 2022TabPFN: A Transformer That Solves Small Tabular Classification Problems in a Secondcited by 674
- 2020Masked Label Prediction: Unified Message Passing Model for Semi-Supervised Classificationcited by 506
- 2023A critical look at the evaluation of GNNs under heterophily: Are we really making progress?cited by 343
30 more
- 2025TabICL: A Tabular Foundation Model for In-Context Learning on Large Datacited by 289
- 2020Wiki-CS: A Wikipedia-Based Benchmark for Graph Neural Networkscited by 260
- 2023One for All: Towards Training One Graph Model for All Classification Taskscited by 243
- 2020Characteristic Functions on Graphs: Birds of a Feather, from Statistical Descriptors to Parametric Modelscited by 116
- 2024TabDPT: Scaling Tabular Foundation Models on Real Datacited by 113
- 2024Why Tabular Foundation Models Should Be a Research Prioritycited by 106
- 2024RelBench: A Benchmark for Deep Learning on Relational Databasescited by 96
- 2024All in One and One for All: A Simple yet Effective Method towards Cross-domain Graph Pretrainingcited by 86
- 2024Classic GNNs are Strong Baselines: Reassessing GNNs for Node Classificationcited by 85
- 2024GFT: Graph Foundation Model with Transferable Tree Vocabularycited by 85
- 2024OpenGraph: Towards Open Graph Foundation Modelscited by 78
- 2024UniGraph: Learning a Unified Cross-Domain Foundation Model for Text-Attributed Graphscited by 66
- 2025SAMGPT: Text-free Graph Foundation Model for Multi-domain Pre-training and Cross-domain Adaptationcited by 62
- 2022Characterizing Graph Datasets for Node Classification: Homophily-Heterophily Dichotomy and Beyondcited by 60
- 2025From Tables to Time: Extending TabPFN-v2 to Time Series Forecastingcited by 60
- 2024AnyGraph: Graph Foundation Model in the Wildcited by 53
- 2025Position: Graph Learning Will Lose Relevance Due To Poor Benchmarkscited by 53
- 2021Boost then Convolve: Gradient Boosting Meets Graph Neural Networkscited by 44
- 2025Graph Foundation Models: A Comprehensive Surveycited by 44
- 2025Multi-Domain Graph Foundation Models: Robust Knowledge Transfer via Topology Alignmentcited by 42
- 2025Can Classic GNNs Be Strong Baselines for Graph-level Tasks? Simple Architectures Meet Excellencecited by 26
- 2025Learning Efficient Positional Encodings with Graph Neural Networkscited by 24
- 2024GraphLand: Evaluating Graph Machine Learning Models on Diverse Industrial Datacited by 20
- 2023MotherNet: Fast Training and Inference via Hyper-Network Transformerscited by 19
- 2025Equivariance Everywhere All At Once: A Recipe for Graph Foundation Modelscited by 17
- 2024GraphFM: A generalist graph transformer that learns transferable representations across diverse domainscited by 14
- 2025On Finetuning Tabular Foundation Modelscited by 13
- 20244DBInfer: A 4D Benchmarking Toolbox for Graph-Centric Predictive Modeling on Relational DBscited by 11
- 2021Does your graph need a confidence boost? Convergent boosted smoothing on graphs with tabular node featurescited by 9
- 2024Revisiting Graph Homophily Measurescited by 4
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Citing papers per year: 2025: 6; 2026: 29.
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- 2025TabPFN-2.5: Advancing the State of the Art in Tabular Foundation Modelscited by 132
- 2025Relational Transformer: Toward Zero-Shot Foundation Models for Relational Datacited by 39
- 2025GraphPFN: A Prior-Data Fitted Graph Foundation Modelcited by 21
- 2026Beyond IID: How General Are Tabular Foundation Models, Really?cited by 20
- 2026PluRel: Synthetic Data unlocks Scaling Laws for Relational Foundation Modelscited by 19
- 2026KumoRFM-2: Scaling Foundation Models for Relational Learningcited by 19
- 2026TabPFN-3: Technical Reportcited by 17
- 2025Bringing Graphs to the Table: Zero-shot Node Classification via Tabular Foundation Modelscited by 16
- 2026Relational In-Context Learning via Synthetic Pre-training with Structural Priorcited by 14
- 2025Can TabPFN Compete with GNNs for Node Classification via Graph Tabularization?cited by 10
- 2026No Need to Train Your RDB Foundation Modelcited by 10
- 2026Tabular Foundation Models are Strong Graph Anomaly Detectorscited by 9
23 more
- 2026TFMLinker: Universal Link Predictor by Graph In-Context Learning with Tabular Foundation Modelscited by 7
- 2026Billion-Scale Graph Foundation Modelscited by 5
- 2025From Tables to Signals: Revealing Spectral Adaptivity in TabPFNcited by 4
- 2026Fixed Aggregation Features Can Rival GNNscited by 4
- 2026OpenRFM: Dissecting Relational In-Context Learningcited by 4
- 2026A Fair Evaluation of Graph Foundation Models for Node Property Predictioncited by 4
- 2026The Post-GCN Decade Revisited: Curvature-Stratified Evaluation of Relational Learningcited by 3
- 2026DeXposure-FM: A Time-series, Graph Foundation Model for Credit Exposures and Stability on Decentralized Financial Networkscited by 1
- 2026DynaTab: Dynamic Feature Ordering as Neural Rewiring for High-Dimensional Tabular Datacited by 1
- 2026Decoupled and Divergence-Conditioned Prompt for Multi-domain Dynamic Graph Foundation Modelscited by 1
- 2026Surprisingly Simple and Effective Multi-Domain Graph Foundation Model through Graph-to-Table Alignmentcited by 1
- 2026LoGIC: Budgeted Context Construction for Node-Level Graph In-Context Learning with Tabular Foundation Modelscited by 1
- 2026DeXposure-Claw: An Agentic System for DeFi Risk Supervisioncited by 0
- 2026Tabular Foundation Models for Discrete Choice Estimationcited by 0
- 2026iStructTab: Structured Feature Sequencing for Multimodal Learning of Image and Tabular Datacited by 0
- 2026GraphFAS: A Distributed System for Automated Graph Feature Generation and Selection in Industrial Transaction Networkscited by 0
- 2026Training Graph Foundation Models on The Web Graphcited by 0
- 2026The Universal Classifier for Graph Learningcited by 0
- 2026Message Passing Does More with Less for In-Context Learning on Graphscited by 0
- 2026NodeGround: A Node Classification Benchmark in the Graph Foundation Model Eracited by 0
- 2026To Learn is to Wander: Learning Across Graphs and Tasks with Random Walkscited by 0
- 2026Towards One-for-All Foundation Model for Attributed Graph Clusteringcited by 0
- 2026Valid for Free: Homophily-Gated Conformal Prediction for Training-Free Node Classification with Tabular Foundation Modelscited by 0
- 2026Valid for Free: Homophily-Gated Conformal Prediction for Training-Free Node Classification with Tabular Foundation Models6 Oct 2026
- 2026Towards One-for-All Foundation Model for Attributed Graph Clustering6 Oct 2026
- 2026To Learn is to Wander: Learning Across Graphs and Tasks with Random Walks5 Oct 2026
- 2026NodeGround: A Node Classification Benchmark in the Graph Foundation Model Era30 Sep 2026
- 2026Message Passing Does More with Less for In-Context Learning on Graphs29 Sep 2026
- 2026The Universal Classifier for Graph Learning28 Sep 2026
- 2026Training Graph Foundation Models on The Web Graph25 Sep 2026
- 2026GraphFAS: A Distributed System for Automated Graph Feature Generation and Selection in Industrial Transaction Networks8 Sep 2026
- 2026LoGIC: Budgeted Context Construction for Node-Level Graph In-Context Learning with Tabular Foundation Models5 Sep 2026
- 2026iStructTab: Structured Feature Sequencing for Multimodal Learning of Image and Tabular Data5 Aug 2026
- 2026Tabular Foundation Models for Discrete Choice Estimation14 Jul 2026
- 2026Surprisingly Simple and Effective Multi-Domain Graph Foundation Model through Graph-to-Table Alignment13 Jul 2026
23 more
- 2026Beyond IID: How General Are Tabular Foundation Models, Really?29 Jun 2026
- 2026A Fair Evaluation of Graph Foundation Models for Node Property Prediction23 Jun 2026
- 2026DeXposure-Claw: An Agentic System for DeFi Risk Supervision17 Jun 2026
- 2026The Post-GCN Decade Revisited: Curvature-Stratified Evaluation of Relational Learning4 Jun 2026
- 2026OpenRFM: Dissecting Relational In-Context Learning3 Jun 2026
- 2026TabPFN-3: Technical Report13 May 2026
- 2026Decoupled and Divergence-Conditioned Prompt for Multi-domain Dynamic Graph Foundation Models13 May 2026
- 2026DynaTab: Dynamic Feature Ordering as Neural Rewiring for High-Dimensional Tabular Data5 May 2026
- 2026KumoRFM-2: Scaling Foundation Models for Relational Learning14 Apr 2026
- 2026Relational In-Context Learning via Synthetic Pre-training with Structural Prior4 Mar 2026
- 2026No Need to Train Your RDB Foundation Model14 Feb 2026
- 2026TFMLinker: Universal Link Predictor by Graph In-Context Learning with Tabular Foundation Models9 Feb 2026
- 2026Billion-Scale Graph Foundation Models4 Feb 2026
- 2026PluRel: Synthetic Data unlocks Scaling Laws for Relational Foundation Models3 Feb 2026
- 2026DeXposure-FM: A Time-series, Graph Foundation Model for Credit Exposures and Stability on Decentralized Financial Networks3 Feb 2026
- 2026Fixed Aggregation Features Can Rival GNNs27 Jan 2026
- 2026Tabular Foundation Models are Strong Graph Anomaly Detectors24 Jan 2026
- 2025Can TabPFN Compete with GNNs for Node Classification via Graph Tabularization?9 Dec 2025
- 2025From Tables to Signals: Revealing Spectral Adaptivity in TabPFN23 Nov 2025
- 2025TabPFN-2.5: Advancing the State of the Art in Tabular Foundation Models11 Nov 2025
- 2025Relational Transformer: Toward Zero-Shot Foundation Models for Relational Data7 Oct 2025
- 2025GraphPFN: A Prior-Data Fitted Graph Foundation Model25 Sep 2025
- 2025Bringing Graphs to the Table: Zero-shot Node Classification via Tabular Foundation Models8 Sep 2025
- 2026DeXposure-Claw: An Agentic System for DeFi Risk Supervision17 Jun 2026
- 2025TabPFN-2.5: Advancing the State of the Art in Tabular Foundation Modelscited by 132
- 2025Relational Transformer: Toward Zero-Shot Foundation Models for Relational Datacited by 39
- 2025GraphPFN: A Prior-Data Fitted Graph Foundation Modelcited by 21
- 2026Beyond IID: How General Are Tabular Foundation Models, Really?cited by 20
- 2026KumoRFM-2: Scaling Foundation Models for Relational Learningcited by 19
- 2026TabPFN-3: Technical Reportcited by 17
- 2025Bringing Graphs to the Table: Zero-shot Node Classification via Tabular Foundation Modelscited by 16
- 2026Relational In-Context Learning via Synthetic Pre-training with Structural Priorcited by 14
- 2025Can TabPFN Compete with GNNs for Node Classification via Graph Tabularization?cited by 10
- 2026No Need to Train Your RDB Foundation Modelcited by 10
- 2026Tabular Foundation Models are Strong Graph Anomaly Detectorscited by 9
- 2026TFMLinker: Universal Link Predictor by Graph In-Context Learning with Tabular Foundation Modelscited by 7
12 most cited of 33 All 33 (JSON)
- 2026Valid for Free: Homophily-Gated Conformal Prediction for Training-Free Node Classification with Tabular Foundation Models6 Oct 2026
- 2026Towards One-for-All Foundation Model for Attributed Graph Clustering6 Oct 2026
- 2026To Learn is to Wander: Learning Across Graphs and Tasks with Random Walks5 Oct 2026
- 2026NodeGround: A Node Classification Benchmark in the Graph Foundation Model Era30 Sep 2026
- 2026Message Passing Does More with Less for In-Context Learning on Graphs29 Sep 2026
- 2026The Universal Classifier for Graph Learning28 Sep 2026
- 2026Training Graph Foundation Models on The Web Graph25 Sep 2026
- 2026GraphFAS: A Distributed System for Automated Graph Feature Generation and Selection in Industrial Transaction Networks8 Sep 2026
- 2026LoGIC: Budgeted Context Construction for Node-Level Graph In-Context Learning with Tabular Foundation Models5 Sep 2026
- 2026iStructTab: Structured Feature Sequencing for Multimodal Learning of Image and Tabular Data5 Aug 2026
- 2026Tabular Foundation Models for Discrete Choice Estimation14 Jul 2026
- 2026Surprisingly Simple and Effective Multi-Domain Graph Foundation Model through Graph-to-Table Alignment13 Jul 2026
12 newest of 33 All 33 (JSON)