Topological Schr"odinger Bridge Matching
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Abstract (arXiv)
Given two boundary distributions, the Schr"odinger Bridge (SB) problem seeks the ``most likely`` random evolution between them with respect to a reference process. It has revealed rich connections to recent machine learning methods for generative modeling and distribution matching. While these methods perform well in Euclidean domains, they are not directly applicable to topological domains such as graphs and simplicial complexes, which are crucial for data defined over network entities, such as node signals and edge flows. In this work, we propose the Topological Schr"odinger Bridge problem (TSBP) for matching signal distributions on a topological domain. We set the reference process to follow some linear tractable topology-aware stochastic dynamics such as topological heat diffusion. For the case of Gaussian boundary distributions, we derive a closed-form topological SB (TSB) in terms of its time-marginal and stochastic differential. In the general case, leveraging the well-known result, we show that the optimal process follows the forward-backward topological dynamics governed by some unknowns. Building on these results, we develop TSB-based models for matching topological signals by parameterizing the unknowns in the optimal process as (topological) neural networks and learning them through likelihood training. We validate the theoretical results and demonstrate the practical applications of TSB-based models on both synthetic and real-world networks, emphasizing the role of topology. Additionally, we discuss the connections of TSB-based models to other emerging models, and outline future directions for topological signal matching.
Key facts. Cited by 4 papers in the map (data through 7 Oct 2026). Builds on 52 of its 104 references that are in the map. First posted on arXiv 7 Apr 2025.
Builds on
52 of 104 references.
References · 52
- 2020Denoising Diffusion Probabilistic Modelscited by 20,851
- 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,282
- 2020Score-Based Generative Modeling through Stochastic Differential Equationscited by 8,964
- 2015Deep Unsupervised Learning using Nonequilibrium Thermodynamicscited by 7,005
- 2022Flow Matching for Generative Modelingcited by 5,426
- 2019Generative Modeling by Estimating Gradients of the Data Distributioncited by 4,067
- 2018Neural Ordinary Differential Equationscited by 3,733
- 2021Structured Denoising Diffusion Models in Discrete State-Spacescited by 1,665
- 2023Improving and generalizing flow-based generative models with minibatch optimal transportcited by 835
- 2021Diffusion Schr"odinger Bridge with Applications to Score-Based Generative Modelingcited by 594
- 2019Sliced Score Matching: A Scalable Approach to Density and Score Estimationcited by 381
- 2024Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows with Applications to Protein Co-Designcited by 294
38 more
- 2013A survey of the Schr"odinger problem and some of its connections with optimal transportcited by 286
- 2022Score-based Generative Modeling of Graphs via the System of Stochastic Differential Equationscited by 273
- 2020Permutation Invariant Graph Generation via Score-Based Generative Modelingcited by 263
- 2022BBDM: Image-to-image Translation with Brownian Bridge Diffusion Modelscited by 222
- 2021Likelihood Training of Schr"odinger Bridge using Forward-Backward SDEs Theorycited by 216
- 2023Denoising Diffusion Bridge Modelscited by 171
- 2023Inversion by Direct Iteration: An Alternative to Denoising Diffusion for Image Restorationcited by 164
- 2021Solving Schr"odinger Bridges via Maximum Likelihoodcited by 140
- 2021Deep Generative Learning via Schr"odinger Bridgecited by 103
- 2022Let us Build Bridges: Understanding and Extending Diffusion Generative Modelscited by 102
- 2019Topological Signal Processing over Simplicial Complexescited by 94
- 2022Action Matching: Learning Stochastic Dynamics from Samplescited by 94
- 2023Stochastic interpolants with data-dependent couplingscited by 94
- 2021Proximal Optimal Transport Modeling of Population Dynamicscited by 91
- 2018Random Walks on Simplicial Complexes and the normalized Hodge 1-Laplaciancited by 84
- 2023Diffusion Bridge Mixture Transports, Schr"odinger Bridge Problems and Generative Modelingcited by 80
- 2023Generative Diffusion Models on Graphs: Methods and Applicationscited by 79
- 2021Principled Simplicial Neural Networks for Trajectory Predictioncited by 77
- 2013Discrete Signal Processing on Graphs: Frequency Analysiscited by 72
- 2022Diffusion Models for Graphs Benefit From Discrete State Spacescited by 69
- 2021What are higher-order networks?cited by 66
- 2024Position: Topological Deep Learning is the New Frontier for Relational Learningcited by 65
- 2022The Schr"odinger Bridge between Gaussian Measures has a Closed Formcited by 63
- 2021Simulating Diffusion Bridges with Score Matchingcited by 51
- 2019Wasserstein Proximal Algorithms for the Schr"odinger Bridge Problem: Density Control with Nonlinear Driftcited by 50
- 2024Light and Optimal Schr"odinger Bridge Matchingcited by 45
- 2021Simplicial Convolutional Neural Networkscited by 40
- 2020Entropy-Regularized 2-Wasserstein Distance between Gaussian Measurescited by 32
- 2022Simplicial Convolutional Filterscited by 18
- 2022First Hitting Diffusion Models for Generating Manifold, Graph and Categorical Datacited by 18
- 2021Polarization in Geometric Opinion Dynamicscited by 16
- 2023Hodge-Compositional Edge Gaussian Processescited by 16
- 2023Gaussian Processes on Cellular Complexescited by 15
- 2015Optimal transport over a linear dynamical systemcited by 14
- 2021Non-separable Spatio-temporal Graph Kernels via SPDEscited by 11
- 2023Variational Gaussian Process Diffusion Processescited by 10
- 2021Edges in Brain Networks: Contributions to Models of Structure and Functioncited by 9
- 2021The decomposition of the higher-order homology embedding constructed from the k-Laplaciancited by 8
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Citing papers per year: 2025: 2; 2026: 2.
4 papers.
- 2025Modeling Cell Dynamics and Interactions with Unbalanced Mean Field Schr"odinger Bridgecited by 12
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- 2026Expanding the Chaos: Neural Operator for Stochastic (Partial) Differential Equationscited by 4
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- 2026Expanding the Chaos: Neural Operator for Stochastic (Partial) Differential Equations3 Jan 2026
- 2025Variational Regularized Unbalanced Optimal Transport: Single Network, Least Action17 May 2025
- 2025Modeling Cell Dynamics and Interactions with Unbalanced Mean Field Schr"odinger Bridge16 May 2025