mlsanityData to 14 Oct 2026

Overcoming Sparsity Artifacts in Crosscoders to Interpret Chat-Tuning

arXiv 2504.02922 ↗First posted 3 Apr 2025cs.LG cs.AI cs.CLcited by 34

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Abstract (arXiv)

Model diffing is the study of how fine-tuning changes a model's representations and internal algorithms. Many behaviors of interest are introduced during fine-tuning, and model diffing offers a promising lens to interpret such behaviors. Crosscoders are a recent model diffing method that learns a shared dictionary of interpretable concepts represented as latent directions in both the base and fine-tuned models, allowing us to track how concepts shift or emerge during fine-tuning. Notably, prior work has observed concepts with no direction in the base model, and it was hypothesized that these model-specific latents were concepts introduced during fine-tuning. However, we identify two issues which stem from the crosscoders L1 training loss that can misattribute concepts as unique to the fine-tuned model, when they really exist in both models. We develop Latent Scaling to flag these issues by more accurately measuring each latent's presence across models. In experiments comparing Gemma 2 2B base and chat models, we observe that the standard crosscoder suffers heavily from these issues. Building on these insights, we train a crosscoder with BatchTopK loss and show that it substantially mitigates these issues, finding more genuinely chat-specific and highly interpretable concepts. We recommend practitioners adopt similar techniques. Using the BatchTopK crosscoder, we successfully identify a set of chat-specific latents that are both interpretable and causally effective, representing concepts such as textitfalse information and textitpersonal question, along with multiple refusal-related latents that show nuanced preferences for different refusal triggers. Overall, our work advances best practices for the crosscoder-based methodology for model diffing and demonstrates that it can provide concrete insights into how chat-tuning modifies model behavior.

Key facts. Cited by 34 papers in the map (data through 14 Oct 2026). Builds on 50 of its 81 references that are in the map. First posted on arXiv 3 Apr 2025.

Builds on

50 of 81 references.

References · 50

  1. 2019Sentence-BERT: Sentence Embeddings using Siamese BERT-Networkscited by 9,170
  2. 2024Gemma 2: Improving Open Language Models at a Practical Sizecited by 1,998
  3. 2023Sparse Autoencoders Find Highly Interpretable Features in Language Modelscited by 1,420
  4. 2016Understanding intermediate layers using linear classifier probescited by 1,353
  5. 2016Man is to Computer Programmer as Woman is to Homemaker? Debiasing Word Embeddingscited by 1,312
  6. 2022Interpretability in the Wild: a Circuit for Indirect Object Identification in GPT-2 smallcited by 1,165
  7. 2023Towards Understanding Sycophancy in Language Modelscited by 1,040
  8. 2024Refusal in Language Models Is Mediated by a Single Directioncited by 1,032
  9. 2022Toy Models of Superpositioncited by 971
  10. 2023Enhancing Chat Language Models by Scaling High-quality Instructional Conversationscited by 839
  11. 2023The RefinedWeb Dataset for Falcon LLM: Outperforming Curated Corpora with Web Data, and Web Data Onlycited by 763
  12. 2020Intrinsic Dimensionality Explains the Effectiveness of Language Model Fine-Tuningcited by 671
38 more
  1. 2024Scaling and evaluating sparse autoencoderscited by 553
  2. 2024Safety Alignment Should Be Made More Than Just a Few Tokens Deepcited by 472
  3. 2023LMSYS-Chat-1M: A Large-Scale Real-World LLM Conversation Datasetcited by 461
  4. 2024Alignment faking in large language modelscited by 360
  5. 2024Benchmarking Retrieval-Augmented Generation for Medicinecited by 331
  6. 2025Layer by Layer: Uncovering Hidden Representations in Language Modelscited by 311
  7. 2019Revealing the Dark Secrets of BERTcited by 301
  8. 2024Frontier Models are Capable of In-context Schemingcited by 287
  9. 2024Transcoders Find Interpretable LLM Feature Circuitscited by 200
  10. 2024A Mechanistic Understanding of Alignment Algorithms: A Case Study on DPO and Toxicitycited by 185
  11. 2025Open Problems in Mechanistic Interpretabilitycited by 179
  12. 2025Emergent Misalignment: Narrow finetuning can produce broadly misaligned LLMscited by 172
  13. 2024Fine-Tuning Enhances Existing Mechanisms: A Case Study on Entity Trackingcited by 149
  14. 2024BatchTopK Sparse Autoencoderscited by 130
  15. 2023Mechanistically analyzing the effects of fine-tuning on procedurally defined taskscited by 115
  16. 2020What Happens To BERT Embeddings During Fine-tuning?cited by 113
  17. 2024Automatically Interpreting Millions of Features in Large Language Modelscited by 113
  18. 2021Transformer visualization via dictionary learning: contextualized embedding as a linear superposition of transformer factorscited by 108
  19. 2024Towards Principled Evaluations of Sparse Autoencoders for Interpretability and Controlcited by 86
  20. 2024A Primer on the Inner Workings of Transformer-based Language Modelscited by 85
  21. 2025Universal Sparse Autoencoders: Interpretable Cross-Model Concept Alignmentcited by 62
  22. 2023Concept Algebra for (Score-Based) Text-Controlled Generative Modelscited by 59
  23. 2023From Language Modeling to Instruction Following: Understanding the Behavior Shift in LLMs after Instruction Tuningcited by 56
  24. 2024Decomposing The Dark Matter of Sparse Autoencoderscited by 45
  25. 2021A Closer Look at How Fine-tuning Changes BERTcited by 42
  26. 2020How fine can fine-tuning be? Learning efficient language modelscited by 41
  27. 2021Fine-Tuned Transformers Show Clusters of Similar Representations Across Layerscited by 30
  28. 2022ModelDiff: A Framework for Comparing Learning Algorithmscited by 30
  29. 2024What Do VLMs NOTICE? A Mechanistic Interpretability Pipeline for Gaussian-Noise-free Text-Image Corruption and Evaluationcited by 30
  30. 2020Exploring the Linear Subspace Hypothesis in Gender Bias Mitigationcited by 25
  31. 2023BioInstruct: Instruction Tuning of Large Language Models for Biomedical Natural Language Processingcited by 25
  32. 2024Controllable Context Sensitivity and the Knob Behind Itcited by 23
  33. 2023Fine-tuning Happens in Tiny Subspaces: Exploring Intrinsic Task-specific Subspaces of Pre-trained Language Modelscited by 19
  34. 2025Analyzing Finetuning Representation Shift for Multimodal LLMs Steeringcited by 16
  35. 2024On the Loss of Context-awareness in General Instruction Fine-tuningcited by 11
  36. 2024Extracting Paragraphs from LLM Token Activationscited by 9
  37. 2023On Robustness of Finetuned Transformer-based NLP Modelscited by 8
  38. 2025Why Safeguarded Ships Run Aground? Aligned Large Language Models' Safety Mechanisms Tend to Be Anchored in The Template Regioncited by 6

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Cited by year (2026 to 14 Oct)

Citing papers per year: 2025: 7; 2026: 27.

34 papers.

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  1. 2025Narrow Finetuning Leaves Clearly Readable Traces in Activation Differencescited by 28
  2. 2025Base Models Know How to Reason, Thinking Models Learn Whencited by 27
  3. 2026Language Model Circuits Are Sparse in the Neuron Basiscited by 25
  4. 2025Learning to Interpret Weight Differences in Language Modelscited by 11
  5. 2025Evolution of Concepts in Language Model Pre-Trainingcited by 8
  6. 2025Crosscoding Through Time: Tracking Emergence & Consolidation Of Linguistic Representations Throughout LLM Pretrainingcited by 6
  7. 2025Rank-1 LoRAs Encode Interpretable Reasoning Signalscited by 4
  8. 2026Delta-Crosscoder: Robust Crosscoder Model Diffing in Narrow Fine-Tuning Regimescited by 4
  9. 2025Response Uncertainty and Probe Modeling: Two Sides of the Same Coin in LLM Interpretability?cited by 3
  10. 2026Vision-Default, Prior-Override: Causal Mechanisms of Perception-Knowledge Conflict in Vision-Language Modelscited by 3
  11. 2026Subliminal Learning is Non-Semantic Distillationcited by 3
  12. 2026Convergent World Representations and Divergent Taskscited by 2
22 more
  1. 2026Semantic Optimal Transport for Sparse Autoencoder Feature Matching and Circuit Compressioncited by 2
  2. 2026Mechanistic Analysis of Alignment Algorithms in Language Modelscited by 2
  3. 2026Mechanist: AI as a Scientific Instrument for Discovering the Mechanisms of Intelligencecited by 2
  4. 2026Transcoder Adapters for Reasoning-Model Diffingcited by 1
  5. 2026Sparse Crosscoders for diffing MoEs and Dense modelscited by 1
  6. 2026Backdoor Unlearning Generalization: A Path Toward the Removal of Unknown Triggers in LLMscited by 1
  7. 2026A Unifying Framework for Concept-Based Representational Similaritycited by 1
  8. 2026Sparse Readout Prism: Explaining Logit-Lens Scores in Features Instead of Tokenscited by 1
  9. 2026Understanding On-Policy Distillation: A Mechanistic Interpretability Perspective via Sparse Crosscoderscited by 1
  10. 2026Can Cross-Layer Transcoders Replace Vision Transformer Activations? An Interpretable Perspective on Visioncited by 0
  11. 2026Same Targets, Different Computation: How Post-Training Divides Work Across Model Layerscited by 0
  12. 2026Activation Differences Reveal Backdoors: A Comparison of SAE Architecturescited by 0
  13. 2026fmxcoders: Factorized Masked Crosscoders for Cross-Layer Feature Discoverycited by 0
  14. 2026Exemplar Partitioning for Mechanistic Interpretabilitycited by 0
  15. 2026Size Doesn't Matter: Cosine-Scored Sparse Autoencoderscited by 0
  16. 2026Position: Preventing AI-Generated CSAM Necessitates New Approaches to AI Safetycited by 0
  17. 2026Introspecting Alignment Shifts Beyond Behaviors Implanted Through Fine-Tuningcited by 0
  18. 2026Prof-K: Probabilistic One-Pass Filtering for Efficient Top-k Selectioncited by 0
  19. 2026Diff Mining: Logit Differences Reveal Finetuning Objectivescited by 0
  20. 2026SharedSAE: One Feature Dictionary Across Language Modelscited by 0
  21. 2026Where Decoder Cosine Similarity Fails for SAE Feature Flow Discoverycited by 0
  22. 2026SFT Leaves a Reproducible Signature in Activation Geometry: Calibrating Post-Training Interpretability Against Run-to-Run Noisecited by 0