mlsanityData to 14 Oct 2026

Probabilistic Graph Circuits: Deep Generative Models for Tractable Probabilistic Inference over Graphs

arXiv 2503.12162 ↗First posted 15 Mar 2025cs.LG cs.AIcited by 1

Not on the map. Why?

Abstract (arXiv)

Deep generative models (DGMs) have recently demonstrated remarkable success in capturing complex probability distributions over graphs. Although their excellent performance is attributed to powerful and scalable deep neural networks, it is, at the same time, exactly the presence of these highly non-linear transformations that makes DGMs intractable. Indeed, despite representing probability distributions, intractable DGMs deny probabilistic foundations by their inability to answer even the most basic inference queries without approximations or design choices specific to a very narrow range of queries. To address this limitation, we propose probabilistic graph circuits (PGCs), a framework of tractable DGMs that provide exact and efficient probabilistic inference over (arbitrary parts of) graphs. Nonetheless, achieving both exactness and efficiency is challenging in the permutation-invariant setting of graphs. We design PGCs that are inherently invariant and satisfy these two requirements, yet at the cost of low expressive power. Therefore, we investigate two alternative strategies to achieve the invariance: the first sacrifices the efficiency, and the second sacrifices the exactness. We demonstrate that ignoring the permutation invariance can have severe consequences in anomaly detection, and that the latter approach is competitive with, and sometimes better than, existing intractable DGMs in the context of molecular graph generation.

Key facts. Cited by 1 paper in the map (data through 14 Oct 2026). Builds on 57 of its 87 references that are in the map. First posted on arXiv 15 Mar 2025.

Builds on

57 of 87 references.

References · 57

  1. 2019A Comprehensive Survey on Graph Neural Networkscited by 2,919
  2. 2017Modeling Relational Data with Graph Convolutional Networkscited by 1,694
  3. 2018Glow: Generative Flow with Invertible 1x1 Convolutionscited by 1,545
  4. 2020Learning to Simulate Complex Physics with Graph Networkscited by 880
  5. 2019GNNExplainer: Generating Explanations for Graph Neural Networkscited by 737
  6. 2022DiGress: Discrete Denoising diffusion for graph generationcited by 520
  7. 2018GraphRNN: Generating Realistic Graphs with Deep Auto-regressive Modelscited by 413
  8. 2018MolGAN: An implicit generative model for small molecular graphscited by 393
  9. 2018Deep Learning on Graphs: A Surveycited by 393
  10. 2018GraphVAE: Towards Generation of Small Graphs Using Variational Autoencoderscited by 383
  11. 2020GraphAF: a Flow-based Autoregressive Model for Molecular Graph Generationcited by 305
  12. 2022Score-based Generative Modeling of Graphs via the System of Stochastic Differential Equationscited by 283
38 more
  1. 2020Permutation Invariant Graph Generation via Score-Based Generative Modelingcited by 270
  2. 2019Efficient Graph Generation with Graph Recurrent Attention Networkscited by 234
  3. 2018Fr'echet ChemNet Distance: A metric for generative models for molecules in drug discoverycited by 194
  4. 2018Constrained Graph Variational Autoencoders for Molecule Designcited by 185
  5. 2020MoFlow: An Invertible Flow Model for Generating Molecular Graphscited by 185
  6. 2021GraphDF: A Discrete Flow Model for Molecular Graph Generationcited by 180
  7. 2019Relational Pooling for Graph Representationscited by 150
  8. 2018NetGAN: Generating Graphs via Random Walkscited by 131
  9. 2019GraphNVP: An Invertible Flow Model for Generating Molecular Graphscited by 116
  10. 2018Graphite: Iterative Generative Modeling of Graphscited by 112
  11. 2019Graph Normalizing Flowscited by 104
  12. 2020Einsum Networks: Fast and Scalable Learning of Tractable Probabilistic Circuitscited by 103
  13. 2022Semantic Probabilistic Layers for Neuro-Symbolic Learningcited by 103
  14. 2022SPECTRE: Spectral Conditioning Helps to Overcome the Expressivity Limits of One-shot Graph Generatorscited by 99
  15. 2020A Systematic Survey on Deep Generative Models for Graph Generationcited by 94
  16. 2021GraphEBM: Molecular Graph Generation with Energy-Based Modelscited by 85
  17. 2023Autoregressive Diffusion Model for Graph Generationcited by 83
  18. 2023Generative Diffusion Models on Graphs: Methods and Applicationscited by 81
  19. 2018Constrained Generation of Semantically Valid Graphs via Regularizing Variational Autoencoderscited by 74
  20. 2022A Survey on Deep Graph Generation: Methods and Applicationscited by 69
  21. 2018NeVAE: A Deep Generative Model for Molecular Graphscited by 67
  22. 2021Universal Approximation of Functions on Setscited by 62
  23. 2022GraphGDP: Generative Diffusion Processes for Permutation Invariant Graph Generationcited by 43
  24. 2023MUDiff: Unified Diffusion for Complete Molecule Generationcited by 42
  25. 2016On the Latent Variable Interpretation in Sum-Product Networkscited by 40
  26. 2021Tractable Regularization of Probabilistic Circuitscited by 39
  27. 2023Subtractive Mixture Models via Squaring: Representation and Learningcited by 39
  28. 2023RetroBridge: Modeling Retrosynthesis with Markov Bridgescited by 36
  29. 2022Scaling Up Probabilistic Circuits by Latent Variable Distillationcited by 35
  30. 2021Order Matters: Probabilistic Modeling of Node Sequence for Graph Generationcited by 33
  31. 2016A Unified Approach for Learning the Parameters of Sum-Product Networkscited by 24
  32. 2019Bayesian Learning of Sum-Product Networkscited by 24
  33. 2024Scaling Tractable Probabilistic Circuits: A Systems Perspectivecited by 23
  34. 2013Bayesian Models of Graphs, Arrays and Other Exchangeable Random Structurescited by 22
  35. 2024What is the Relationship between Tensor Factorizations and Circuits (and How Can We Exploit it)?cited by 22
  36. 2023How to Turn Your Knowledge Graph Embeddings into Generative Modelscited by 20
  37. 2023Understanding the Distillation Process from Deep Generative Models to Tractable Probabilistic Circuitscited by 19
  38. 2016Visualizing and Understanding Sum-Product Networkscited by 18

50 most cited of 57 All 57 (JSON)

Built on by

Cited by year

Citing papers per year: 2025: 1.

1 paper.