Can Large Language Models abstract Medical Coded Language?
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Abstract (arXiv)
Large Language Models (LLMs) have become a pivotal research area, potentially making beneficial contributions in fields like healthcare where they can streamline automated billing and decision support. However, the frequent use of specialized coded languages like ICD-10, which are regularly updated and deviate from natural language formats, presents potential challenges for LLMs in creating accurate and meaningful latent representations. This raises concerns among healthcare professionals about potential inaccuracies or ``hallucinations" that could result in the direct impact of a patient. Therefore, this study evaluates whether large language models (LLMs) are aware of medical code ontologies and can accurately generate names from these codes. We assess the capabilities and limitations of both general and biomedical-specific generative models, such as GPT, LLaMA-2, and Meditron, focusing on their proficiency with domain-specific terminologies. While the results indicate that LLMs struggle with coded language, we offer insights on how to adapt these models to reason more effectively.
Key facts. Cited by 20 papers in the map (data through 7 Oct 2026). Builds on 20 of its 51 references that are in the map. First posted on arXiv 16 Mar 2024.
Builds on
20 of 51 references.
References · 20
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8 more
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Citing papers per year: 2024: 1; 2025: 10; 2026: 9.
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- 2025Clinical ModernBERT: An efficient and long context encoder for biomedical textcited by 26
- 2025HiMAE: Hierarchical Masked Autoencoders Discover Resolution-Specific Structure in Wearable Time Seriescited by 19
- 2025ChronoFormer: Time-Aware Transformer Architectures for Structured Clinical Event Modelingcited by 11
- 2025A Collection of Innovations in Medical AI for patient records in 2024cited by 7
- 2025Serialized EHR make for good text representationscited by 7
- 2025CP-Env: Evaluating Large Language Models on Clinical Pathways in a Controllable Hospital Environmentcited by 4
- 2026Learning Clinical Representations Under Systematic Distribution Shiftcited by 2
- 2026Discriminative Representation Learning for Clinical Predictioncited by 2
- 2025Exploring Neural Ordinary Differential Equations as Interpretable Healthcare classifierscited by 1
- 2025Temporal Entailment Pretraining for Clinical Language Models over EHR Datacited by 1
- 2025Diagnosing our datasets: How does my language model learn clinical information?cited by 1
- 2026Learning Longitudinal Health Representations from EHR and Wearable Datacited by 1
8 more
- 2024Unlocking Historical Clinical Trial Data with ALIGN: A Compositional Large Language Model System for Medical Codingcited by 0
- 2025An Optimization Algorithm for Multimodal Data Alignmentcited by 0
- 2026Dense Feature Learning via Linear Structure Preservation in Medical Datacited by 0
- 2026Training a Large Language Model for Medical Coding Using Privacy-Preserving Synthetic Clinical Datacited by 0
- 2026Event Fields: Learning Latent Event Structure for Waveform Foundation Modelscited by 0
- 2026WISTERIA: Learning Clinical Representations from Noisy Supervision via Multi-View Consistency in Electronic Health Recordscited by 0
- 2026AURORA: Contextual Orthogonalization for Geometric Representation Learning in Healthcare Foundation Modelscited by 0
- 2026MorphologyFM: A Foundation Model for Morphology-Aware Representation Learning from ECG and Pulse Oximetry Waveformscited by 0
- 2026MorphologyFM: A Foundation Model for Morphology-Aware Representation Learning from ECG and Pulse Oximetry Waveforms3 Jul 2026
- 2026AURORA: Contextual Orthogonalization for Geometric Representation Learning in Healthcare Foundation Models18 May 2026
- 2026WISTERIA: Learning Clinical Representations from Noisy Supervision via Multi-View Consistency in Electronic Health Records10 May 2026
- 2026Event Fields: Learning Latent Event Structure for Waveform Foundation Models9 May 2026
- 2026Discriminative Representation Learning for Clinical Prediction21 Mar 2026
- 2026Learning Clinical Representations Under Systematic Distribution Shift7 Mar 2026
- 2026Training a Large Language Model for Medical Coding Using Privacy-Preserving Synthetic Clinical Data6 Mar 2026
- 2026Dense Feature Learning via Linear Structure Preservation in Medical Data7 Feb 2026
- 2026Learning Longitudinal Health Representations from EHR and Wearable Data18 Jan 2026
- 2025CP-Env: Evaluating Large Language Models on Clinical Pathways in a Controllable Hospital Environment11 Dec 2025
- 2025HiMAE: Hierarchical Masked Autoencoders Discover Resolution-Specific Structure in Wearable Time Series28 Oct 2025
- 2025Serialized EHR make for good text representations11 Oct 2025
8 more
- 2025Diagnosing our datasets: How does my language model learn clinical information?21 May 2025
- 2025Temporal Entailment Pretraining for Clinical Language Models over EHR Data25 Apr 2025
- 2025ChronoFormer: Time-Aware Transformer Architectures for Structured Clinical Event Modeling10 Apr 2025
- 2025Clinical ModernBERT: An efficient and long context encoder for biomedical text4 Apr 2025
- 2025An Optimization Algorithm for Multimodal Data Alignment5 Mar 2025
- 2025Exploring Neural Ordinary Differential Equations as Interpretable Healthcare classifiers5 Mar 2025
- 2025A Collection of Innovations in Medical AI for patient records in 202425 Feb 2025
- 2024Unlocking Historical Clinical Trial Data with ALIGN: A Compositional Large Language Model System for Medical Coding20 Nov 2024
- 2025Clinical ModernBERT: An efficient and long context encoder for biomedical textcited by 26
- 2025HiMAE: Hierarchical Masked Autoencoders Discover Resolution-Specific Structure in Wearable Time Seriescited by 19
- 2025ChronoFormer: Time-Aware Transformer Architectures for Structured Clinical Event Modelingcited by 11
- 2025A Collection of Innovations in Medical AI for patient records in 2024cited by 7
- 2025Serialized EHR make for good text representationscited by 7
- 2025CP-Env: Evaluating Large Language Models on Clinical Pathways in a Controllable Hospital Environmentcited by 4
- 2026Learning Clinical Representations Under Systematic Distribution Shiftcited by 2
- 2026Discriminative Representation Learning for Clinical Predictioncited by 2
- 2025Exploring Neural Ordinary Differential Equations as Interpretable Healthcare classifierscited by 1
- 2025Temporal Entailment Pretraining for Clinical Language Models over EHR Datacited by 1
- 2025Diagnosing our datasets: How does my language model learn clinical information?cited by 1
- 2026Learning Longitudinal Health Representations from EHR and Wearable Datacited by 1
12 most cited of 20 All 20 (JSON)
- 2026MorphologyFM: A Foundation Model for Morphology-Aware Representation Learning from ECG and Pulse Oximetry Waveforms3 Jul 2026
- 2026AURORA: Contextual Orthogonalization for Geometric Representation Learning in Healthcare Foundation Models18 May 2026
- 2026WISTERIA: Learning Clinical Representations from Noisy Supervision via Multi-View Consistency in Electronic Health Records10 May 2026
- 2026Event Fields: Learning Latent Event Structure for Waveform Foundation Models9 May 2026
- 2026Discriminative Representation Learning for Clinical Prediction21 Mar 2026
- 2026Learning Clinical Representations Under Systematic Distribution Shift7 Mar 2026
- 2026Training a Large Language Model for Medical Coding Using Privacy-Preserving Synthetic Clinical Data6 Mar 2026
- 2026Dense Feature Learning via Linear Structure Preservation in Medical Data7 Feb 2026
- 2026Learning Longitudinal Health Representations from EHR and Wearable Data18 Jan 2026
- 2025CP-Env: Evaluating Large Language Models on Clinical Pathways in a Controllable Hospital Environment11 Dec 2025
- 2025HiMAE: Hierarchical Masked Autoencoders Discover Resolution-Specific Structure in Wearable Time Series28 Oct 2025
- 2025Serialized EHR make for good text representations11 Oct 2025
12 newest of 20 All 20 (JSON)