Generalizing Denoising to Non-Equilibrium Structures Improves Equivariant Force Fields
Not on the map. Why?
Abstract (arXiv)
Understanding the interactions of atoms such as forces in 3D atomistic systems is fundamental to many applications like molecular dynamics and catalyst design. However, simulating these interactions requires compute-intensive ab initio calculations and thus results in limited data for training neural networks. In this paper, we propose to use denoising non-equilibrium structures (DeNS) as an auxiliary task to better leverage training data and improve performance. For training with DeNS, we first corrupt a 3D structure by adding noise to its 3D coordinates and then predict the noise. Different from previous works on denoising, which are limited to equilibrium structures, the proposed method generalizes denoising to a much larger set of non-equilibrium structures. The main difference is that a non-equilibrium structure does not correspond to local energy minima and has non-zero forces, and therefore it can have many possible atomic positions compared to an equilibrium structure. This makes denoising non-equilibrium structures an ill-posed problem since the target of denoising is not uniquely defined. Our key insight is to additionally encode the forces of the original non-equilibrium structure to specify which non-equilibrium structure we are denoising. Concretely, given a corrupted non-equilibrium structure and the forces of the original one, we predict the non-equilibrium structure satisfying the input forces instead of any arbitrary structures. Since DeNS requires encoding forces, DeNS favors equivariant networks, which can easily incorporate forces and other higher-order tensors in node embeddings. We study the effectiveness of training equivariant networks with DeNS on OC20, OC22 and MD17 datasets and demonstrate that DeNS can achieve new state-of-the-art results on OC20 and OC22 and significantly improve training efficiency on MD17.
Key facts. Cited by 18 papers in the map (data through 7 Oct 2026). Builds on 54 of its 70 references that are in the map. First posted on arXiv 14 Mar 2024.
Builds on
54 of 70 references.
References · 54
- 2017Attention Is All You Needcited by 59,932
- 2018BERT: Pre-training of Deep Bidirectional Transformers for Language Understandingcited by 40,204
- 2020Language Models are Few-Shot Learnerscited by 32,199
- 2020An Image is Worth 16x16 Words: Transformers for Image Recognition at Scalecited by 29,915
- 2021Masked Autoencoders Are Scalable Vision Learnerscited by 7,339
- 2016Layer Normalizationcited by 5,579
- 2019Generative Modeling by Estimating Gradients of the Data Distributioncited by 4,067
- 2017Neural Message Passing for Quantum Chemistrycited by 3,460
- 2020Improved Techniques for Training Score-Based Generative Modelscited by 1,036
- 2016Deep Networks with Stochastic Depthcited by 973
- 2021E(n) Equivariant Graph Neural Networkscited by 951
- 2020Learning to Simulate Complex Physics with Graph Networkscited by 867
38 more
- 2018Tensor field networks: Rotation- and translation-equivariant neural networks for 3D point cloudscited by 735
- 2021E(3)-Equivariant Graph Neural Networks for Data-Efficient and Accurate Interatomic Potentialscited by 701
- 2023Scaling Vision Transformers to 22 Billion Parameterscited by 690
- 2020SE(3)-Transformers: 3D Roto-Translation Equivariant Attention Networkscited by 602
- 2017SchNet: A continuous-filter convolutional neural network for modeling quantum interactionscited by 569
- 2020Directional Message Passing for Molecular Graphscited by 556
- 2022MACE: Higher Order Equivariant Message Passing Neural Networks for Fast and Accurate Force Fieldscited by 467
- 2018Spherical CNNscited by 452
- 2021Equivariant message passing for the prediction of tensorial properties and molecular spectracited by 438
- 20183D Steerable CNNs: Learning Rotationally Equivariant Features in Volumetric Datacited by 348
- 2020Learning from Protein Structure with Geometric Vector Perceptronscited by 308
- 2022UL2: Unifying Language Learning Paradigmscited by 292
- 2022Equiformer: Equivariant Graph Attention Transformer for 3D Atomistic Graphscited by 258
- 2022Learning Local Equivariant Representations for Large-Scale Atomistic Dynamicscited by 254
- 2020The Open Catalyst 2020 (OC20) Dataset and Community Challengescited by 246
- 2021Geometric and Physical Quantities Improve E(3) Equivariant Message Passingcited by 225
- 2017Deep Potential Molecular Dynamics: a scalable model with the accuracy of quantum mechanicscited by 213
- 2023EquiformerV2: Improved Equivariant Transformer for Scaling to Higher-Degree Representationscited by 201
- 2022TorchMD-NET: Equivariant Transformers for Neural Network based Molecular Potentialscited by 179
- 2022e3nn: Euclidean Neural Networkscited by 171
- 2018Clebsch-Gordan Nets: a Fully Fourier Space Spherical Convolutional Neural Networkcited by 168
- 2022Pre-training via Denoising for Molecular Property Predictioncited by 124
- 2023Reducing SO(3) Convolutions to SO(2) for Efficient Equivariant GNNscited by 113
- 2018Interactive Supercomputing on 40,000 Cores for Machine Learning and Data Analysiscited by 110
- 2022The Open Catalyst 2022 (OC22) Dataset and Challenges for Oxide Electrocatalystscited by 95
- 2022Forces are not Enough: Benchmark and Critical Evaluation for Machine Learning Force Fields with Molecular Simulationscited by 92
- 2018Less is more: sampling chemical space with active learningcited by 80
- 2023FAENet: Frame Averaging Equivariant GNN for Materials Modelingcited by 72
- 2021SE(3)-equivariant prediction of molecular wavefunctions and electronic densitiescited by 67
- 2022Molecular Geometry Pretraining with SE(3)-Invariant Denoising Distance Matchingcited by 67
- 2023A Hitchhiker's Guide to Geometric GNNs for 3D Atomic Systemscited by 65
- 2022GemNet-OC: Developing Graph Neural Networks for Large and Diverse Molecular Simulation Datasetscited by 61
- 2020Relevance of Rotationally Equivariant Convolutions for Predicting Molecular Propertiescited by 51
- 2022Spherical Channels for Modeling Atomic Interactionscited by 47
- 2022Energy-Motivated Equivariant Pretraining for 3D Molecular Graphscited by 37
- 2023Scaling the leading accuracy of deep equivariant models to biomolecular simulations of realistic sizecited by 33
- 2023Fractional Denoising for 3D Molecular Pre-trainingcited by 33
- 2022Equivariant Graph Attention Networks for Molecular Property Predictioncited by 19
50 most cited of 54 All 54 (JSON)
Built on by
Citing papers per year: 2024: 5; 2025: 6; 2026: 7.
18 papers.
Sort:
- 2025Learning Smooth and Expressive Interatomic Potentials for Physical Property Predictioncited by 79
- 2024Orb: A Fast, Scalable Neural Network Potentialcited by 63
- 2024Open Materials 2024 (OMat24) Inorganic Materials Dataset and Modelscited by 50
- 2026EquiformerV3: Scaling Efficient, Expressive, and General SE(3)-Equivariant Graph Attention Transformerscited by 7
- 2026MatRIS: Toward Reliable and Efficient Pretrained Machine Learning Interatomic Potentialscited by 6
- 2024Using pretrained graph neural networks with token mixers as geometric featurizers for conformational dynamicscited by 5
- 2025LeMat-Traj: A Scalable and Unified Dataset of Materials Trajectories for Atomistic Modelingcited by 4
- 2025Scaling Laws and Symmetry, Evidence from Neural Force Fieldscited by 4
- 2026Self-Conditioned Denoising for Atomistic Representation Learningcited by 3
- 2024Deconstructing equivariant representations in molecular systemscited by 2
- 2026Edge Cluster Expansion with Radial Rotary Attention for Interatomic Potentialscited by 2
- 2024Physics-Informed Weakly Supervised Learning for Interatomic Potentialscited by 1
6 more
- 2025Augmenting Molecular Graphs with Geometries via Machine Learning Interatomic Potentialscited by 1
- 2026From Evaluation to Design: Using Potential Energy Surface Smoothness Metrics to Guide Machine Learning Interatomic Potential Architecturescited by 1
- 2026TriForces: Augmenting Atomistic GNNs for Transferable Representationscited by 1
- 2025On the Importance of Pretraining Data Alignment for Atomic Property Predictioncited by 0
- 2025Learning 3D Anisotropic Noise Distributions Improves Molecular Force Field Modelingcited by 0
- 2026Hessian-based molecular conformation augmentation for a scalable and efficient strategy of machine learning interatomic potentialscited by 0
- 2026Hessian-based molecular conformation augmentation for a scalable and efficient strategy of machine learning interatomic potentials4 Sep 2026
- 2026Edge Cluster Expansion with Radial Rotary Attention for Interatomic Potentials12 Jul 2026
- 2026TriForces: Augmenting Atomistic GNNs for Transferable Representations20 May 2026
- 2026EquiformerV3: Scaling Efficient, Expressive, and General SE(3)-Equivariant Graph Attention Transformers10 Apr 2026
- 2026Self-Conditioned Denoising for Atomistic Representation Learning17 Mar 2026
- 2026MatRIS: Toward Reliable and Efficient Pretrained Machine Learning Interatomic Potentials2 Mar 2026
- 2026From Evaluation to Design: Using Potential Energy Surface Smoothness Metrics to Guide Machine Learning Interatomic Potential Architectures4 Feb 2026
- 2025Learning 3D Anisotropic Noise Distributions Improves Molecular Force Field Modeling25 Oct 2025
- 2025Scaling Laws and Symmetry, Evidence from Neural Force Fields10 Oct 2025
- 2025LeMat-Traj: A Scalable and Unified Dataset of Materials Trajectories for Atomistic Modeling28 Aug 2025
- 2025Augmenting Molecular Graphs with Geometries via Machine Learning Interatomic Potentials1 Jul 2025
- 2025Learning Smooth and Expressive Interatomic Potentials for Physical Property Prediction17 Feb 2025
6 more
- 2025On the Importance of Pretraining Data Alignment for Atomic Property Prediction16 Feb 2025
- 2024Orb: A Fast, Scalable Neural Network Potential29 Oct 2024
- 2024Open Materials 2024 (OMat24) Inorganic Materials Dataset and Models16 Oct 2024
- 2024Deconstructing equivariant representations in molecular systems10 Oct 2024
- 2024Using pretrained graph neural networks with token mixers as geometric featurizers for conformational dynamics30 Sep 2024
- 2024Physics-Informed Weakly Supervised Learning for Interatomic Potentials23 Jul 2024
- 2025Learning Smooth and Expressive Interatomic Potentials for Physical Property Predictioncited by 79
- 2024Orb: A Fast, Scalable Neural Network Potentialcited by 63
- 2024Open Materials 2024 (OMat24) Inorganic Materials Dataset and Modelscited by 50
- 2026EquiformerV3: Scaling Efficient, Expressive, and General SE(3)-Equivariant Graph Attention Transformerscited by 7
- 2026MatRIS: Toward Reliable and Efficient Pretrained Machine Learning Interatomic Potentialscited by 6
- 2024Using pretrained graph neural networks with token mixers as geometric featurizers for conformational dynamicscited by 5
- 2025LeMat-Traj: A Scalable and Unified Dataset of Materials Trajectories for Atomistic Modelingcited by 4
- 2025Scaling Laws and Symmetry, Evidence from Neural Force Fieldscited by 4
- 2026Self-Conditioned Denoising for Atomistic Representation Learningcited by 3
- 2024Deconstructing equivariant representations in molecular systemscited by 2
- 2026Edge Cluster Expansion with Radial Rotary Attention for Interatomic Potentialscited by 2
- 2024Physics-Informed Weakly Supervised Learning for Interatomic Potentialscited by 1
12 most cited of 18 All 18 (JSON)
- 2026Hessian-based molecular conformation augmentation for a scalable and efficient strategy of machine learning interatomic potentials4 Sep 2026
- 2026Edge Cluster Expansion with Radial Rotary Attention for Interatomic Potentials12 Jul 2026
- 2026TriForces: Augmenting Atomistic GNNs for Transferable Representations20 May 2026
- 2026EquiformerV3: Scaling Efficient, Expressive, and General SE(3)-Equivariant Graph Attention Transformers10 Apr 2026
- 2026Self-Conditioned Denoising for Atomistic Representation Learning17 Mar 2026
- 2026MatRIS: Toward Reliable and Efficient Pretrained Machine Learning Interatomic Potentials2 Mar 2026
- 2026From Evaluation to Design: Using Potential Energy Surface Smoothness Metrics to Guide Machine Learning Interatomic Potential Architectures4 Feb 2026
- 2025Learning 3D Anisotropic Noise Distributions Improves Molecular Force Field Modeling25 Oct 2025
- 2025Scaling Laws and Symmetry, Evidence from Neural Force Fields10 Oct 2025
- 2025LeMat-Traj: A Scalable and Unified Dataset of Materials Trajectories for Atomistic Modeling28 Aug 2025
- 2025Augmenting Molecular Graphs with Geometries via Machine Learning Interatomic Potentials1 Jul 2025
- 2025Learning Smooth and Expressive Interatomic Potentials for Physical Property Prediction17 Feb 2025
12 newest of 18 All 18 (JSON)