Equivariant Graph Neural Operator for Modeling 3D Dynamics
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Abstract (arXiv)
Modeling the complex three-dimensional (3D) dynamics of relational systems is an important problem in the natural sciences, with applications ranging from molecular simulations to particle mechanics. Machine learning methods have achieved good success by learning graph neural networks to model spatial interactions. However, these approaches do not faithfully capture temporal correlations since they only model next-step predictions. In this work, we propose Equivariant Graph Neural Operator (EGNO), a novel and principled method that directly models dynamics as trajectories instead of just next-step prediction. Different from existing methods, EGNO explicitly learns the temporal evolution of 3D dynamics where we formulate the dynamics as a function over time and learn neural operators to approximate it. To capture the temporal correlations while keeping the intrinsic SE(3)-equivariance, we develop equivariant temporal convolutions parameterized in the Fourier space and build EGNO by stacking the Fourier layers over equivariant networks. EGNO is the first operator learning framework that is capable of modeling solution dynamics functions over time while retaining 3D equivariance. Comprehensive experiments in multiple domains, including particle simulations, human motion capture, and molecular dynamics, demonstrate the significantly superior performance of EGNO against existing methods, thanks to the equivariant temporal modeling. Our code is available at https://github.com/MinkaiXu/egno.
Key facts. Cited by 37 papers in the map (data through 7 Oct 2026). Builds on 35 of its 46 references that are in the map. First posted on arXiv 19 Jan 2024.
Builds on
35 of 46 references.
References · 35
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- 2023Consistency Modelscited by 1,778
- 2021E(n) Equivariant Graph Neural Networkscited by 951
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- 2020SE(3)-Transformers: 3D Roto-Translation Equivariant Attention Networkscited by 602
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- 2016Interaction Networks for Learning about Objects, Relations and Physicscited by 503
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- 2023Geometric Latent Diffusion Models for 3D Molecule Generationcited by 185
- 2022Fast Sampling of Diffusion Models via Operator Learningcited by 173
- 2021Spherical Message Passing for 3D Graph Networkscited by 166
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- 2019Hamiltonian Graph Networks with ODE Integratorscited by 107
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- 2021Seismic wave propagation and inversion with Neural Operatorscited by 51
- 2022Learning Physical Dynamics with Subequivariant Graph Neural Networkscited by 38
- 2022Equivariant Graph Hierarchy-Based Neural Networkscited by 24
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- 2020Scalable Graph Networks for Particle Simulationscited by 8
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Citing papers per year: 2024: 10; 2025: 18; 2026: 9.
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- 2024A Survey of Geometric Graph Neural Networks: Data Structures, Models and Applicationscited by 28
- 2024Universal Physics Transformers: A Framework For Efficiently Scaling Neural Operatorscited by 25
- 2024Are High-Degree Representations Really Unnecessary in Equivariant Graph Neural Networks?cited by 18
- 2024Geometric Trajectory Diffusion Modelscited by 13
- 2024Relaxed Equivariance via Multitask Learningcited by 13
- 2025Force-Free Molecular Dynamics Through Autoregressive Equivariant Networkscited by 13
- 2025FlashMD: long-stride, universal prediction of molecular dynamicscited by 11
- 2025Principled Approaches for Extending Neural Architectures to Function Spaces for Operator Learningcited by 11
- 2025Large Language-Geometry Model: When LLM meets Equivariancecited by 10
- 2025Learning (Approximately) Equivariant Networks via Constrained Optimizationcited by 10
- 2024Physics-Informed Regularization for Domain-Agnostic Dynamical System Modelingcited by 9
- 2025NOWS: Neural Operator Warm Starts for Accelerating Iterative Solverscited by 9
25 more
- 2025Fast and Distributed Equivariant Graph Neural Networks by Virtual Node Learningcited by 6
- 2026Learning PDE Solvers with Physics and Data: A Unifying View of Physics-Informed Neural Networks and Neural Operatorscited by 6
- 2024Spatio-Temporal Fluid Dynamics Modeling via Physical-Awareness and Parameter Diffusion Guidancecited by 5
- 2026Learning Hamiltonian Flow Maps: Mean Flow Consistency for Large-Timestep Molecular Dynamicscited by 5
- 2025Beyond Ensembles: Simulating All-Atom Protein Dynamics in a Learned Latent Spacecited by 3
- 2025MaNGO - Adaptable Graph Network Simulators via Meta-Learningcited by 3
- 2025Cloning Deterministic Worlds: The Critical Role of Latent Geometry in Long-Horizon World Modelscited by 3
- 2024Learning Lagrangian Interaction Dynamics with Sampling-Based Model Order Reductioncited by 2
- 2024Bridging Geometric States via Geometric Diffusion Bridgecited by 2
- 2024Graph Fourier Neural ODEs: Modeling Spatial-temporal Multi-scales in Molecular Dynamicscited by 2
- 2025PAINET: A Principled Efficient Transformer for 3D Dynamics Modelingcited by 2
- 2026Approximate Equivariance via Projection-based Regularisationcited by 2
- 2025Graph-Based Operator Learning from Limited Data on Irregular Domainscited by 1
- 2025EquiReg: Equivariance Regularized Diffusion for Inverse Problemscited by 1
- 2025ATOM: A Pretrained Neural Operator for Multitask Molecular Dynamicscited by 1
- 2025Context-aware Learned Mesh-based Simulation via Trajectory-Level Meta-Learningcited by 1
- 2025Neural Modular Physics for Elastic Simulationcited by 1
- 2025Graph Pseudotime Analysis and Neural Stochastic Differential Equations for Analyzing Retinal Degeneration Dynamics and Beyondcited by 0
- 2025Implicit Augmentation from Distributional Symmetry in Turbulence Super-Resolutioncited by 0
- 2026Latent Dynamics Graph Convolutional Networks for model order reduction of parameterized time-dependent PDEscited by 0
- 2026Recurrent Equivariant Constraint Modulation: Learning Per-Layer Symmetry Relaxation from Datacited by 0
- 2026AeTHERON: Autoregressive Topology-aware Heterogeneous Graph Operator Network for Fluid-Structure Interactioncited by 0
- 2026Point Cloud Sequence Encoding for Material-conditioned Graph Network Simulatorscited by 0
- 2026EqGINO: Equivariant Geometry-Informed Fourier Neural Operators for 3D PDEscited by 0
- 2026Graph Mamba Operator: A Latent Simulator for Interacting Particle Systemscited by 0
- 2026Graph Mamba Operator: A Latent Simulator for Interacting Particle Systems8 Jun 2026
- 2026EqGINO: Equivariant Geometry-Informed Fourier Neural Operators for 3D PDEs2 Jun 2026
- 2026Point Cloud Sequence Encoding for Material-conditioned Graph Network Simulators20 May 2026
- 2026AeTHERON: Autoregressive Topology-aware Heterogeneous Graph Operator Network for Fluid-Structure Interaction15 Apr 2026
- 2026Recurrent Equivariant Constraint Modulation: Learning Per-Layer Symmetry Relaxation from Data2 Feb 2026
- 2026Learning Hamiltonian Flow Maps: Mean Flow Consistency for Large-Timestep Molecular Dynamics29 Jan 2026
- 2026Learning PDE Solvers with Physics and Data: A Unifying View of Physics-Informed Neural Networks and Neural Operators20 Jan 2026
- 2026Latent Dynamics Graph Convolutional Networks for model order reduction of parameterized time-dependent PDEs16 Jan 2026
- 2026Approximate Equivariance via Projection-based Regularisation8 Jan 2026
- 2025Neural Modular Physics for Elastic Simulation17 Dec 2025
- 2025Context-aware Learned Mesh-based Simulation via Trajectory-Level Meta-Learning7 Nov 2025
- 2025NOWS: Neural Operator Warm Starts for Accelerating Iterative Solvers4 Nov 2025
25 more
- 2025Cloning Deterministic Worlds: The Critical Role of Latent Geometry in Long-Horizon World Models30 Oct 2025
- 2025MaNGO - Adaptable Graph Network Simulators via Meta-Learning7 Oct 2025
- 2025ATOM: A Pretrained Neural Operator for Multitask Molecular Dynamics7 Oct 2025
- 2025PAINET: A Principled Efficient Transformer for 3D Dynamics Modeling5 Oct 2025
- 2025Implicit Augmentation from Distributional Symmetry in Turbulence Super-Resolution25 Sep 2025
- 2025Beyond Ensembles: Simulating All-Atom Protein Dynamics in a Learned Latent Space2 Sep 2025
- 2025Fast and Distributed Equivariant Graph Neural Networks by Virtual Node Learning24 Jun 2025
- 2025Principled Approaches for Extending Neural Architectures to Function Spaces for Operator Learning12 Jun 2025
- 2025EquiReg: Equivariance Regularized Diffusion for Inverse Problems29 May 2025
- 2025FlashMD: long-stride, universal prediction of molecular dynamics25 May 2025
- 2025Graph-Based Operator Learning from Limited Data on Irregular Domains25 May 2025
- 2025Learning (Approximately) Equivariant Networks via Constrained Optimization19 May 2025
- 2025Force-Free Molecular Dynamics Through Autoregressive Equivariant Networks31 Mar 2025
- 2025Large Language-Geometry Model: When LLM meets Equivariance16 Feb 2025
- 2025Graph Pseudotime Analysis and Neural Stochastic Differential Equations for Analyzing Retinal Degeneration Dynamics and Beyond10 Feb 2025
- 2024Graph Fourier Neural ODEs: Modeling Spatial-temporal Multi-scales in Molecular Dynamics3 Nov 2024
- 2024Bridging Geometric States via Geometric Diffusion Bridge31 Oct 2024
- 2024Relaxed Equivariance via Multitask Learning23 Oct 2024
- 2024Geometric Trajectory Diffusion Models16 Oct 2024
- 2024Are High-Degree Representations Really Unnecessary in Equivariant Graph Neural Networks?15 Oct 2024
- 2024Physics-Informed Regularization for Domain-Agnostic Dynamical System Modeling8 Oct 2024
- 2024Learning Lagrangian Interaction Dynamics with Sampling-Based Model Order Reduction4 Jul 2024
- 2024Spatio-Temporal Fluid Dynamics Modeling via Physical-Awareness and Parameter Diffusion Guidance18 Mar 2024
- 2024A Survey of Geometric Graph Neural Networks: Data Structures, Models and Applications1 Mar 2024
- 2024Universal Physics Transformers: A Framework For Efficiently Scaling Neural Operators19 Feb 2024
- 2024Geometric Trajectory Diffusion Modelscited by 13
- 2025EquiReg: Equivariance Regularized Diffusion for Inverse Problemscited by 1
- 2025EquiReg: Equivariance Regularized Diffusion for Inverse Problems29 May 2025
- 2024Geometric Trajectory Diffusion Models16 Oct 2024
- 2024A Survey of Geometric Graph Neural Networks: Data Structures, Models and Applicationscited by 28
- 2024Universal Physics Transformers: A Framework For Efficiently Scaling Neural Operatorscited by 25
- 2024Are High-Degree Representations Really Unnecessary in Equivariant Graph Neural Networks?cited by 18
- 2024Relaxed Equivariance via Multitask Learningcited by 13
- 2025Force-Free Molecular Dynamics Through Autoregressive Equivariant Networkscited by 13
- 2025FlashMD: long-stride, universal prediction of molecular dynamicscited by 11
- 2025Principled Approaches for Extending Neural Architectures to Function Spaces for Operator Learningcited by 11
- 2025Large Language-Geometry Model: When LLM meets Equivariancecited by 10
- 2025Learning (Approximately) Equivariant Networks via Constrained Optimizationcited by 10
- 2024Physics-Informed Regularization for Domain-Agnostic Dynamical System Modelingcited by 9
- 2025NOWS: Neural Operator Warm Starts for Accelerating Iterative Solverscited by 9
- 2025Fast and Distributed Equivariant Graph Neural Networks by Virtual Node Learningcited by 6
12 most cited of 33 All 33 (JSON)
- 2026EqGINO: Equivariant Geometry-Informed Fourier Neural Operators for 3D PDEs2 Jun 2026
- 2026Point Cloud Sequence Encoding for Material-conditioned Graph Network Simulators20 May 2026
- 2026AeTHERON: Autoregressive Topology-aware Heterogeneous Graph Operator Network for Fluid-Structure Interaction15 Apr 2026
- 2026Recurrent Equivariant Constraint Modulation: Learning Per-Layer Symmetry Relaxation from Data2 Feb 2026
- 2026Learning Hamiltonian Flow Maps: Mean Flow Consistency for Large-Timestep Molecular Dynamics29 Jan 2026
- 2026Learning PDE Solvers with Physics and Data: A Unifying View of Physics-Informed Neural Networks and Neural Operators20 Jan 2026
- 2026Latent Dynamics Graph Convolutional Networks for model order reduction of parameterized time-dependent PDEs16 Jan 2026
- 2026Approximate Equivariance via Projection-based Regularisation8 Jan 2026
- 2025Neural Modular Physics for Elastic Simulation17 Dec 2025
- 2025Context-aware Learned Mesh-based Simulation via Trajectory-Level Meta-Learning7 Nov 2025
- 2025NOWS: Neural Operator Warm Starts for Accelerating Iterative Solvers4 Nov 2025
- 2025MaNGO - Adaptable Graph Network Simulators via Meta-Learning7 Oct 2025
12 newest of 33 All 33 (JSON)