mlsanityData to 7 Oct 2026

Equivariant Graph Neural Operator for Modeling 3D Dynamics

arXiv 2401.11037 ↗First posted 19 Jan 2024cs.LG cs.NA math.NAcited by 37

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Abstract (arXiv)

Modeling the complex three-dimensional (3D) dynamics of relational systems is an important problem in the natural sciences, with applications ranging from molecular simulations to particle mechanics. Machine learning methods have achieved good success by learning graph neural networks to model spatial interactions. However, these approaches do not faithfully capture temporal correlations since they only model next-step predictions. In this work, we propose Equivariant Graph Neural Operator (EGNO), a novel and principled method that directly models dynamics as trajectories instead of just next-step prediction. Different from existing methods, EGNO explicitly learns the temporal evolution of 3D dynamics where we formulate the dynamics as a function over time and learn neural operators to approximate it. To capture the temporal correlations while keeping the intrinsic SE(3)-equivariance, we develop equivariant temporal convolutions parameterized in the Fourier space and build EGNO by stacking the Fourier layers over equivariant networks. EGNO is the first operator learning framework that is capable of modeling solution dynamics functions over time while retaining 3D equivariance. Comprehensive experiments in multiple domains, including particle simulations, human motion capture, and molecular dynamics, demonstrate the significantly superior performance of EGNO against existing methods, thanks to the equivariant temporal modeling. Our code is available at https://github.com/MinkaiXu/egno.

Key facts. Cited by 37 papers in the map (data through 7 Oct 2026). Builds on 35 of its 46 references that are in the map. First posted on arXiv 19 Jan 2024.

Builds on

35 of 46 references.

References · 35

  1. 2017Attention Is All You Needcited by 59,932
  2. 2015Deep Residual Learning for Image Recognitioncited by 51,809
  3. 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,282
  4. 2017Neural Message Passing for Quantum Chemistrycited by 3,460
  5. 2020Fourier Neural Operator for Parametric Partial Differential Equationscited by 2,806
  6. 2023Consistency Modelscited by 1,778
  7. 2021E(n) Equivariant Graph Neural Networkscited by 951
  8. 2020Learning to Simulate Complex Physics with Graph Networkscited by 867
  9. 2020Learning Mesh-Based Simulation with Graph Networkscited by 840
  10. 2018Tensor field networks: Rotation- and translation-equivariant neural networks for 3D point cloudscited by 735
  11. 2020Neural Operator: Graph Kernel Network for Partial Differential Equationscited by 722
  12. 2018PointConv: Deep Convolutional Networks on 3D Point Cloudscited by 656
23 more
  1. 2020SE(3)-Transformers: 3D Roto-Translation Equivariant Attention Networkscited by 602
  2. 2022GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generationcited by 511
  3. 2016Interaction Networks for Learning about Objects, Relations and Physicscited by 503
  4. 2018Spherical CNNscited by 452
  5. 2023Improved Techniques for Training Consistency Modelscited by 430
  6. 2021Neural Operator: Learning Maps Between Function Spacescited by 413
  7. 2022Message Passing Neural PDE Solverscited by 368
  8. 2018Neural Relational Inference for Interacting Systemscited by 339
  9. 2023Geometric Latent Diffusion Models for 3D Molecule Generationcited by 185
  10. 2022Fast Sampling of Diffusion Models via Operator Learningcited by 173
  11. 2021Spherical Message Passing for 3D Graph Networkscited by 166
  12. 2021Learning Gradient Fields for Molecular Conformation Generationcited by 162
  13. 2019Hamiltonian Graph Networks with ODE Integratorscited by 107
  14. 2018Flexible Neural Representation for Physics Predictioncited by 91
  15. 2021SE(3) Equivariant Graph Neural Networks with Complete Local Framescited by 75
  16. 2022Equivariant Graph Mechanics Networks with Constraintscited by 67
  17. 2019Equivariant Flows: sampling configurations for multi-body systems with symmetric energiescited by 57
  18. 2021Seismic wave propagation and inversion with Neural Operatorscited by 51
  19. 2022Learning Physical Dynamics with Subequivariant Graph Neural Networkscited by 38
  20. 2022Equivariant Graph Hierarchy-Based Neural Networkscited by 24
  21. 2023Implicit Transfer Operator Learning: Multiple Time-Resolution Surrogates for Molecular Dynamicscited by 14
  22. 2023Spatial Attention Kinetic Networks with E(n)-Equivariancecited by 11
  23. 2020Scalable Graph Networks for Particle Simulationscited by 8

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Cited by year (2026 to 7 Oct)

Citing papers per year: 2024: 10; 2025: 18; 2026: 9.

37 papers.

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  1. 2024A Survey of Geometric Graph Neural Networks: Data Structures, Models and Applicationscited by 28
  2. 2024Universal Physics Transformers: A Framework For Efficiently Scaling Neural Operatorscited by 25
  3. 2024Are High-Degree Representations Really Unnecessary in Equivariant Graph Neural Networks?cited by 18
  4. 2024Geometric Trajectory Diffusion Modelscited by 13
  5. 2024Relaxed Equivariance via Multitask Learningcited by 13
  6. 2025Force-Free Molecular Dynamics Through Autoregressive Equivariant Networkscited by 13
  7. 2025FlashMD: long-stride, universal prediction of molecular dynamicscited by 11
  8. 2025Principled Approaches for Extending Neural Architectures to Function Spaces for Operator Learningcited by 11
  9. 2025Large Language-Geometry Model: When LLM meets Equivariancecited by 10
  10. 2025Learning (Approximately) Equivariant Networks via Constrained Optimizationcited by 10
  11. 2024Physics-Informed Regularization for Domain-Agnostic Dynamical System Modelingcited by 9
  12. 2025NOWS: Neural Operator Warm Starts for Accelerating Iterative Solverscited by 9
25 more
  1. 2025Fast and Distributed Equivariant Graph Neural Networks by Virtual Node Learningcited by 6
  2. 2026Learning PDE Solvers with Physics and Data: A Unifying View of Physics-Informed Neural Networks and Neural Operatorscited by 6
  3. 2024Spatio-Temporal Fluid Dynamics Modeling via Physical-Awareness and Parameter Diffusion Guidancecited by 5
  4. 2026Learning Hamiltonian Flow Maps: Mean Flow Consistency for Large-Timestep Molecular Dynamicscited by 5
  5. 2025Beyond Ensembles: Simulating All-Atom Protein Dynamics in a Learned Latent Spacecited by 3
  6. 2025MaNGO - Adaptable Graph Network Simulators via Meta-Learningcited by 3
  7. 2025Cloning Deterministic Worlds: The Critical Role of Latent Geometry in Long-Horizon World Modelscited by 3
  8. 2024Learning Lagrangian Interaction Dynamics with Sampling-Based Model Order Reductioncited by 2
  9. 2024Bridging Geometric States via Geometric Diffusion Bridgecited by 2
  10. 2024Graph Fourier Neural ODEs: Modeling Spatial-temporal Multi-scales in Molecular Dynamicscited by 2
  11. 2025PAINET: A Principled Efficient Transformer for 3D Dynamics Modelingcited by 2
  12. 2026Approximate Equivariance via Projection-based Regularisationcited by 2
  13. 2025Graph-Based Operator Learning from Limited Data on Irregular Domainscited by 1
  14. 2025EquiReg: Equivariance Regularized Diffusion for Inverse Problemscited by 1
  15. 2025ATOM: A Pretrained Neural Operator for Multitask Molecular Dynamicscited by 1
  16. 2025Context-aware Learned Mesh-based Simulation via Trajectory-Level Meta-Learningcited by 1
  17. 2025Neural Modular Physics for Elastic Simulationcited by 1
  18. 2025Graph Pseudotime Analysis and Neural Stochastic Differential Equations for Analyzing Retinal Degeneration Dynamics and Beyondcited by 0
  19. 2025Implicit Augmentation from Distributional Symmetry in Turbulence Super-Resolutioncited by 0
  20. 2026Latent Dynamics Graph Convolutional Networks for model order reduction of parameterized time-dependent PDEscited by 0
  21. 2026Recurrent Equivariant Constraint Modulation: Learning Per-Layer Symmetry Relaxation from Datacited by 0
  22. 2026AeTHERON: Autoregressive Topology-aware Heterogeneous Graph Operator Network for Fluid-Structure Interactioncited by 0
  23. 2026Point Cloud Sequence Encoding for Material-conditioned Graph Network Simulatorscited by 0
  24. 2026EqGINO: Equivariant Geometry-Informed Fourier Neural Operators for 3D PDEscited by 0
  25. 2026Graph Mamba Operator: A Latent Simulator for Interacting Particle Systemscited by 0