mlsanityData to 7 Oct 2026

Bridging Geometric States via Geometric Diffusion Bridge

arXiv 2410.24220 ↗First posted 31 Oct 2024cs.LG cs.AI q-bio.QMcited by 2

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Abstract (arXiv)

The accurate prediction of geometric state evolution in complex systems is critical for advancing scientific domains such as quantum chemistry and material modeling. Traditional experimental and computational methods face challenges in terms of environmental constraints and computational demands, while current deep learning approaches still fall short in terms of precision and generality. In this work, we introduce the Geometric Diffusion Bridge (GDB), a novel generative modeling framework that accurately bridges initial and target geometric states. GDB leverages a probabilistic approach to evolve geometric state distributions, employing an equivariant diffusion bridge derived by a modified version of Doob's h-transform for connecting geometric states. This tailored diffusion process is anchored by initial and target geometric states as fixed endpoints and governed by equivariant transition kernels. Moreover, trajectory data can be seamlessly leveraged in our GDB framework by using a chain of equivariant diffusion bridges, providing a more detailed and accurate characterization of evolution dynamics. Theoretically, we conduct a thorough examination to confirm our framework's ability to preserve joint distributions of geometric states and capability to completely model the underlying dynamics inducing trajectory distributions with negligible error. Experimental evaluations across various real-world scenarios show that GDB surpasses existing state-of-the-art approaches, opening up a new pathway for accurately bridging geometric states and tackling crucial scientific challenges with improved accuracy and applicability.

Key facts. Cited by 2 papers in the map (data through 7 Oct 2026). Builds on 68 of its 123 references that are in the map. First posted on arXiv 31 Oct 2024.

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68 of 123 references.

References · 68

  1. 2020Denoising Diffusion Probabilistic Modelscited by 20,851
  2. 2021High-Resolution Image Synthesis with Latent Diffusion Modelscited by 18,694
  3. 2020Denoising Diffusion Implicit Modelscited by 9,655
  4. 2020Score-Based Generative Modeling through Stochastic Differential Equationscited by 8,964
  5. 2015Deep Unsupervised Learning using Nonequilibrium Thermodynamicscited by 7,005
  6. 2022Photorealistic Text-to-Image Diffusion Models with Deep Language Understandingcited by 6,322
  7. 2022Flow Matching for Generative Modelingcited by 5,426
  8. 2019Generative Modeling by Estimating Gradients of the Data Distributioncited by 4,067
  9. 2021Improved Denoising Diffusion Probabilistic Modelscited by 3,736
  10. 2022Flow Straight and Fast: Learning to Generate and Transfer Data with Rectified Flowcited by 3,550
  11. 2022Elucidating the Design Space of Diffusion-Based Generative Modelscited by 2,994
  12. 2020DiffWave: A Versatile Diffusion Model for Audio Synthesiscited by 1,339
38 more
  1. 2021Geometric Deep Learning: Grids, Groups, Graphs, Geodesics, and Gaugescited by 1,131
  2. 2022Diffusion-LM Improves Controllable Text Generationcited by 1,006
  3. 2019Strategies for Pre-training Graph Neural Networkscited by 964
  4. 2021E(n) Equivariant Graph Neural Networkscited by 951
  5. 2023Stochastic Interpolants: A Unifying Framework for Flows and Diffusionscited by 897
  6. 2021How Attentive are Graph Attention Networks?cited by 818
  7. 2018Tensor field networks: Rotation- and translation-equivariant neural networks for 3D point cloudscited by 735
  8. 2022Recipe for a General, Powerful, Scalable Graph Transformercited by 702
  9. 2021E(3)-Equivariant Graph Neural Networks for Data-Efficient and Accurate Interatomic Potentialscited by 701
  10. 2022Equivariant Diffusion for Molecule Generation in 3Dcited by 666
  11. 2020SE(3)-Transformers: 3D Roto-Translation Equivariant Attention Networkscited by 602
  12. 2020Directional Message Passing for Molecular Graphscited by 556
  13. 2022GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generationcited by 511
  14. 2022MACE: Higher Order Equivariant Message Passing Neural Networks for Fast and Accurate Force Fieldscited by 467
  15. 2021Equivariant message passing for the prediction of tensorial properties and molecular spectracited by 438
  16. 2021GemNet: Universal Directional Graph Neural Networks for Moleculescited by 342
  17. 2020Learning from Protein Structure with Geometric Vector Perceptronscited by 308
  18. 2023Understanding Diffusion Objectives as the ELBO with Simple Data Augmentationcited by 293
  19. 2022Equiformer: Equivariant Graph Attention Transformer for 3D Atomistic Graphscited by 258
  20. 2022Learning Local Equivariant Representations for Large-Scale Atomistic Dynamicscited by 254
  21. 2020Equivariant Flows: Exact Likelihood Generative Learning for Symmetric Densitiescited by 248
  22. 2020The Open Catalyst 2020 (OC20) Dataset and Community Challengescited by 246
  23. 2021Geometric and Physical Quantities Improve E(3) Equivariant Message Passingcited by 225
  24. 2023SE(3) diffusion model with application to protein backbone generationcited by 214
  25. 2020Machine Learning Force Fieldscited by 204
  26. 2023EquiformerV2: Improved Equivariant Transformer for Scaling to Higher-Degree Representationscited by 201
  27. 2023Geometric Latent Diffusion Models for 3D Molecule Generationcited by 185
  28. 2022TorchMD-NET: Equivariant Transformers for Neural Network based Molecular Potentialscited by 179
  29. 2023Denoising Diffusion Bridge Modelscited by 171
  30. 2023Diffusion Schr"odinger Bridge Matchingcited by 151
  31. 2023Equivariant flow matchingcited by 131
  32. 2023Rethinking the Expressive Power of GNNs via Graph Biconnectivitycited by 119
  33. 2023Artificial Intelligence for Science in Quantum, Atomistic, and Continuum Systemscited by 118
  34. 2023Reducing SO(3) Convolutions to SO(2) for Efficient Equivariant GNNscited by 113
  35. 2022Diffusion-based Molecule Generation with Informative Prior Bridgescited by 104
  36. 2022The Open Catalyst 2022 (OC22) Dataset and Challenges for Oxide Electrocatalystscited by 95
  37. 2022Forces are not Enough: Benchmark and Critical Evaluation for Machine Learning Force Fields with Molecular Simulationscited by 92
  38. 2023Diffusion Bridge Mixture Transports, Schr"odinger Bridge Problems and Generative Modelingcited by 80

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Citing papers per year: 2025: 1; 2026: 1.

2 papers.