Graph Invariant Learning with Subgraph Co-mixup for Out-Of-Distribution Generalization
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Abstract (arXiv)
Graph neural networks (GNNs) have been demonstrated to perform well in graph representation learning, but always lacking in generalization capability when tackling out-of-distribution (OOD) data. Graph invariant learning methods, backed by the invariance principle among defined multiple environments, have shown effectiveness in dealing with this issue. However, existing methods heavily rely on well-predefined or accurately generated environment partitions, which are hard to be obtained in practice, leading to sub-optimal OOD generalization performances. In this paper, we propose a novel graph invariant learning method based on invariant and variant patterns co-mixup strategy, which is capable of jointly generating mixed multiple environments and capturing invariant patterns from the mixed graph data. Specifically, we first adopt a subgraph extractor to identify invariant subgraphs. Subsequently, we design one novel co-mixup strategy, i.e., jointly conducting environment Mixup and invariant Mixup. For the environment Mixup, we mix the variant environment-related subgraphs so as to generate sufficiently diverse multiple environments, which is important to guarantee the quality of the graph invariant learning. For the invariant Mixup, we mix the invariant subgraphs, further encouraging to capture invariant patterns behind graphs while getting rid of spurious correlations for OOD generalization. We demonstrate that the proposed environment Mixup and invariant Mixup can mutually promote each other. Extensive experiments on both synthetic and real-world datasets demonstrate that our method significantly outperforms state-of-the-art under various distribution shifts.
Key facts. Cited by 18 papers in the map (data through 14 Oct 2026). Builds on 30 of its 46 references that are in the map. First posted on arXiv 18 Dec 2023.
Builds on
30 of 46 references.
References · 30
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18 more
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- 2020Environment Inference for Invariant Learningcited by 306
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- 2019Graph Representation Learning: A Surveycited by 75
- 2022Graph Rationalization with Environment-based Augmentationscited by 70
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Citing papers per year: 2024: 10; 2025: 7; 2026: 1.
18 papers.
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- 2024Pairwise Alignment Improves Graph Domain Adaptationcited by 25
- 2024A Survey of Deep Graph Learning under Distribution Shifts: from Graph Out-of-Distribution Generalization to Adaptationcited by 17
- 2024Learning Invariant Representations of Graph Neural Networks via Cluster Generalizationcited by 10
- 2025Raising the Bar in Graph OOD Generalization: Invariant Learning Beyond Explicit Environment Modelingcited by 9
- 2024DIVE: Subgraph Disagreement for Graph Out-of-Distribution Generalizationcited by 7
- 2025BrainOOD: Out-of-distribution Generalizable Brain Network Analysiscited by 7
- 2024Dissecting the Failure of Invariant Learning on Graphscited by 5
- 2025Towards Invariance to Node Identifiers in Graph Neural Networkscited by 4
- 2024A Survey of Out-of-distribution Generalization for Graph Machine Learning from a Causal Viewcited by 3
- 2025Pruning Spurious Subgraphs for Graph Out-of-Distribution Generalizationcited by 3
- 2024On the Utilization of Unique Node Identifiers in Graph Neural Networkscited by 2
- 2024GSINA: Improving Subgraph Extraction for Graph Invariant Learning via Graph Sinkhorn Attentioncited by 1
6 more
- 2024Improving Graph Out-of-distribution Generalization Beyond Causalitycited by 1
- 2025GraphIFE: Rethinking Graph Imbalance Node Classification via Invariant Learningcited by 1
- 2024Teleporter Theory: A General and Simple Approach for Modeling Cross-World Counterfactual Causalitycited by 0
- 2025Soft causal learning for generalized molecule property prediction: An environment perspectivecited by 0
- 2025Out-of-Distribution Graph Models Mergingcited by 0
- 2026Enhancing Protein Representation Learning via Manifold Restore Mixingcited by 0
- 2026Enhancing Protein Representation Learning via Manifold Restore Mixing21 Jun 2026
- 2025GraphIFE: Rethinking Graph Imbalance Node Classification via Invariant Learning28 Sep 2025
- 2025Pruning Spurious Subgraphs for Graph Out-of-Distribution Generalization6 Jun 2025
- 2025Out-of-Distribution Graph Models Merging4 Jun 2025
- 2025Soft causal learning for generalized molecule property prediction: An environment perspective7 May 2025
- 2025Towards Invariance to Node Identifiers in Graph Neural Networks19 Feb 2025
- 2025Raising the Bar in Graph OOD Generalization: Invariant Learning Beyond Explicit Environment Modeling15 Feb 2025
- 2025BrainOOD: Out-of-distribution Generalizable Brain Network Analysis2 Feb 2025
- 2024Dissecting the Failure of Invariant Learning on Graphs5 Nov 2024
- 2024On the Utilization of Unique Node Identifiers in Graph Neural Networks4 Nov 2024
- 2024A Survey of Deep Graph Learning under Distribution Shifts: from Graph Out-of-Distribution Generalization to Adaptation25 Oct 2024
- 2024A Survey of Out-of-distribution Generalization for Graph Machine Learning from a Causal View15 Sep 2024
6 more
- 2024DIVE: Subgraph Disagreement for Graph Out-of-Distribution Generalization8 Aug 2024
- 2024Improving Graph Out-of-distribution Generalization Beyond Causality14 Jul 2024
- 2024Teleporter Theory: A General and Simple Approach for Modeling Cross-World Counterfactual Causality17 Jun 2024
- 2024Learning Invariant Representations of Graph Neural Networks via Cluster Generalization6 Mar 2024
- 2024Pairwise Alignment Improves Graph Domain Adaptation2 Mar 2024
- 2024GSINA: Improving Subgraph Extraction for Graph Invariant Learning via Graph Sinkhorn Attention11 Feb 2024
- 2024Pairwise Alignment Improves Graph Domain Adaptationcited by 25
- 2024A Survey of Deep Graph Learning under Distribution Shifts: from Graph Out-of-Distribution Generalization to Adaptationcited by 17
- 2024Learning Invariant Representations of Graph Neural Networks via Cluster Generalizationcited by 10
- 2025Raising the Bar in Graph OOD Generalization: Invariant Learning Beyond Explicit Environment Modelingcited by 9
- 2024DIVE: Subgraph Disagreement for Graph Out-of-Distribution Generalizationcited by 7
- 2025BrainOOD: Out-of-distribution Generalizable Brain Network Analysiscited by 7
- 2024Dissecting the Failure of Invariant Learning on Graphscited by 5
- 2025Towards Invariance to Node Identifiers in Graph Neural Networkscited by 4
- 2024A Survey of Out-of-distribution Generalization for Graph Machine Learning from a Causal Viewcited by 3
- 2025Pruning Spurious Subgraphs for Graph Out-of-Distribution Generalizationcited by 3
- 2024On the Utilization of Unique Node Identifiers in Graph Neural Networkscited by 2
- 2024GSINA: Improving Subgraph Extraction for Graph Invariant Learning via Graph Sinkhorn Attentioncited by 1
12 most cited of 18 All 18 (JSON)
- 2026Enhancing Protein Representation Learning via Manifold Restore Mixing21 Jun 2026
- 2025GraphIFE: Rethinking Graph Imbalance Node Classification via Invariant Learning28 Sep 2025
- 2025Pruning Spurious Subgraphs for Graph Out-of-Distribution Generalization6 Jun 2025
- 2025Out-of-Distribution Graph Models Merging4 Jun 2025
- 2025Soft causal learning for generalized molecule property prediction: An environment perspective7 May 2025
- 2025Towards Invariance to Node Identifiers in Graph Neural Networks19 Feb 2025
- 2025Raising the Bar in Graph OOD Generalization: Invariant Learning Beyond Explicit Environment Modeling15 Feb 2025
- 2025BrainOOD: Out-of-distribution Generalizable Brain Network Analysis2 Feb 2025
- 2024Dissecting the Failure of Invariant Learning on Graphs5 Nov 2024
- 2024On the Utilization of Unique Node Identifiers in Graph Neural Networks4 Nov 2024
- 2024A Survey of Deep Graph Learning under Distribution Shifts: from Graph Out-of-Distribution Generalization to Adaptation25 Oct 2024
- 2024A Survey of Out-of-distribution Generalization for Graph Machine Learning from a Causal View15 Sep 2024
12 newest of 18 All 18 (JSON)