mlsanityData to 14 Oct 2026

Generative retrieval-augmented ontologic graph and multi-agent strategies for interpretive large language model-based materials design

arXiv 2310.19998 ↗First posted 30 Oct 2023cs.CL cond-mat.dis-nn cond-mat.mes-hallcited by 3

On the map: Retrieval-augmented generation → Medical and biomedical RAG

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Abstract (arXiv)

Transformer neural networks show promising capabilities, in particular for uses in materials analysis, design and manufacturing, including their capacity to work effectively with both human language, symbols, code, and numerical data. Here we explore the use of large language models (LLMs) as a tool that can support engineering analysis of materials, applied to retrieving key information about subject areas, developing research hypotheses, discovery of mechanistic relationships across disparate areas of knowledge, and writing and executing simulation codes for active knowledge generation based on physical ground truths. When used as sets of AI agents with specific features, capabilities, and instructions, LLMs can provide powerful problem solution strategies for applications in analysis and design problems. Our experiments focus on using a fine-tuned model, MechGPT, developed based on training data in the mechanics of materials domain. We first affirm how finetuning endows LLMs with reasonable understanding of domain knowledge. However, when queried outside the context of learned matter, LLMs can have difficulty to recall correct information. We show how this can be addressed using retrieval-augmented Ontological Knowledge Graph strategies that discern how the model understands what concepts are important and how they are related. Illustrated for a use case of relating distinct areas of knowledge - here, music and proteins - such strategies can also provide an interpretable graph structure with rich information at the node, edge and subgraph level. We discuss nonlinear sampling strategies and agent-based modeling applied to complex question answering, code generation and execution in the context of automated force field development from actively learned Density Functional Theory (DFT) modeling, and data analysis.

Key facts. Cited by 3 papers in the map (data through 14 Oct 2026). Placed in Medical and biomedical RAG, one of 15 directions in Retrieval-augmented generation. First posted on arXiv 30 Oct 2023.

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Citing papers per year: 2023: 1; 2024: 1; 2025: 1.

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  1. 2023MechGPT, a language-based strategy for mechanics and materials modeling that connects knowledge across scales, disciplines and modalities
  2. 2025Large language models in materials science and the need for open-source approaches
  3. 2024Leveraging Chemistry Foundation Models to Facilitate Structure Focused Retrieval Augmented Generation in Multi-Agent Workflows for Catalyst and Materials Design
  4. 2025Hypothesis Generation for Materials Discovery and Design Using Goal-Driven and Constraint-Guided LLM Agents
  5. 2024Are LLMs Ready for Real-World Materials Discovery?
  6. 2026Towards Agentic Intelligence for Materials Science
  7. 2024HoneyComb: A Flexible LLM-Based Agent System for Materials Science
  8. 2025LLM Agents for Knowledge Discovery in Atomic Layer Processing