EGraFFBench: Evaluation of Equivariant Graph Neural Network Force Fields for Atomistic Simulations
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Abstract (arXiv)
Equivariant graph neural networks force fields (EGraFFs) have shown great promise in modelling complex interactions in atomic systems by exploiting the graphs' inherent symmetries. Recent works have led to a surge in the development of novel architectures that incorporate equivariance-based inductive biases alongside architectural innovations like graph transformers and message passing to model atomic interactions. However, thorough evaluations of these deploying EGraFFs for the downstream task of real-world atomistic simulations, is lacking. To this end, here we perform a systematic benchmarking of 6 EGraFF algorithms (NequIP, Allegro, BOTNet, MACE, Equiformer, TorchMDNet), with the aim of understanding their capabilities and limitations for realistic atomistic simulations. In addition to our thorough evaluation and analysis on eight existing datasets based on the benchmarking literature, we release two new benchmark datasets, propose four new metrics, and three challenging tasks. The new datasets and tasks evaluate the performance of EGraFF to out-of-distribution data, in terms of different crystal structures, temperatures, and new molecules. Interestingly, evaluation of the EGraFF models based on dynamic simulations reveals that having a lower error on energy or force does not guarantee stable or reliable simulation or faithful replication of the atomic structures. Moreover, we find that no model clearly outperforms other models on all datasets and tasks. Importantly, we show that the performance of all the models on out-of-distribution datasets is unreliable, pointing to the need for the development of a foundation model for force fields that can be used in real-world simulations. In summary, this work establishes a rigorous framework for evaluating machine learning force fields in the context of atomic simulations and points to open research challenges within this domain.
Key facts. Cited by 15 papers in the map (data through 7 Oct 2026). Builds on 16 of its 47 references that are in the map. First posted on arXiv 3 Oct 2023.
Builds on
16 of 47 references.
References · 16
- 2019A Comprehensive Survey on Graph Neural Networkscited by 2,906
- 2018Graph Neural Networks: A Review of Methods and Applicationscited by 1,571
- 2014DeepWalk: Online Learning of Social Representationscited by 1,543
- 2020Learning to Simulate Complex Physics with Graph Networkscited by 867
- 2018Link Prediction Based on Graph Neural Networkscited by 829
- 2021E(3)-Equivariant Graph Neural Networks for Data-Efficient and Accurate Interatomic Potentialscited by 701
- 2022MACE: Higher Order Equivariant Message Passing Neural Networks for Fast and Accurate Force Fieldscited by 467
- 2021Equivariant message passing for the prediction of tensorial properties and molecular spectracited by 438
- 2022Equiformer: Equivariant Graph Attention Transformer for 3D Atomistic Graphscited by 258
- 2020Fast and Uncertainty-Aware Directional Message Passing for Non-Equilibrium Moleculescited by 254
- 2022Learning Local Equivariant Representations for Large-Scale Atomistic Dynamicscited by 254
- 2022TorchMD-NET: Equivariant Transformers for Neural Network based Molecular Potentialscited by 179
4 more
- 2022The Design Space of E(3)-Equivariant Atom-Centered Interatomic Potentialscited by 100
- 2022Forces are not Enough: Benchmark and Critical Evaluation for Machine Learning Force Fields with Molecular Simulationscited by 92
- 2022The Open MatSci ML Toolkit: A Flexible Framework for Machine Learning in Materials Sciencecited by 14
- 2023MatSciML: A Broad, Multi-Task Benchmark for Solid-State Materials Modelingcited by 14
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Citing papers per year: 2023: 2; 2024: 5; 2025: 7; 2026: 1.
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- 2023A Hitchhiker's Guide to Geometric GNNs for 3D Atomic Systemscited by 65
- 2024Foundational Large Language Models for Materials Researchcited by 18
- 2024TorchMD-Net 2.0: Fast Neural Network Potentials for Molecular Simulationscited by 15
- 2024Stability-Aware Training of Machine Learning Force Fields with Differentiable Boltzmann Estimatorscited by 8
- 2024A Recipe for Charge Density Predictioncited by 8
- 2025Transformers Discover Molecular Structure Without Graph Priorscited by 6
- 2025UniFFBench: Evaluating Universal Machine Learning Force Fields Against Experimental Measurementscited by 5
- 2025Understanding and Mitigating Distribution Shifts For Machine Learning Force Fieldscited by 3
- 2025CrystalGym: A New Benchmark for Materials Discovery Using Reinforcement Learningcited by 3
- 2023Predicting and Interpreting Energy Barriers of Metallic Glasses with Graph Neural Networkscited by 2
- 2024Deconstructing equivariant representations in molecular systemscited by 2
- 2025ATOM: A Pretrained Neural Operator for Multitask Molecular Dynamicscited by 1
- 2026Graph Mamba Operator: A Latent Simulator for Interacting Particle Systems8 Jun 2026
- 2025ATOM: A Pretrained Neural Operator for Multitask Molecular Dynamics7 Oct 2025
- 2025Transformers Discover Molecular Structure Without Graph Priors2 Oct 2025
- 2025CrystalGym: A New Benchmark for Materials Discovery Using Reinforcement Learning27 Sep 2025
- 2025UniFFBench: Evaluating Universal Machine Learning Force Fields Against Experimental Measurements7 Aug 2025
- 2025Understanding and Mitigating Distribution Shifts For Machine Learning Force Fields11 Mar 2025
- 2025CrystalFramer: Rethinking the Role of Frames for SE(3)-Invariant Crystal Structure Modeling4 Mar 2025
- 2025Improving the Stability of GNN Force Field Models by Reducing Feature Correlation18 Feb 2025
- 2024Foundational Large Language Models for Materials Research12 Dec 2024
- 2024Deconstructing equivariant representations in molecular systems10 Oct 2024
- 2024A Recipe for Charge Density Prediction29 May 2024
- 2024TorchMD-Net 2.0: Fast Neural Network Potentials for Molecular Simulations27 Feb 2024
- 2023A Hitchhiker's Guide to Geometric GNNs for 3D Atomic Systemscited by 65
- 2024Foundational Large Language Models for Materials Researchcited by 18
- 2024TorchMD-Net 2.0: Fast Neural Network Potentials for Molecular Simulationscited by 15
- 2024Stability-Aware Training of Machine Learning Force Fields with Differentiable Boltzmann Estimatorscited by 8
- 2024A Recipe for Charge Density Predictioncited by 8
- 2025Transformers Discover Molecular Structure Without Graph Priorscited by 6
- 2025UniFFBench: Evaluating Universal Machine Learning Force Fields Against Experimental Measurementscited by 5
- 2025Understanding and Mitigating Distribution Shifts For Machine Learning Force Fieldscited by 3
- 2025CrystalGym: A New Benchmark for Materials Discovery Using Reinforcement Learningcited by 3
- 2023Predicting and Interpreting Energy Barriers of Metallic Glasses with Graph Neural Networkscited by 2
- 2024Deconstructing equivariant representations in molecular systemscited by 2
- 2025ATOM: A Pretrained Neural Operator for Multitask Molecular Dynamicscited by 1
12 most cited of 14 All 14 (JSON)
- 2025ATOM: A Pretrained Neural Operator for Multitask Molecular Dynamics7 Oct 2025
- 2025Transformers Discover Molecular Structure Without Graph Priors2 Oct 2025
- 2025CrystalGym: A New Benchmark for Materials Discovery Using Reinforcement Learning27 Sep 2025
- 2025UniFFBench: Evaluating Universal Machine Learning Force Fields Against Experimental Measurements7 Aug 2025
- 2025Understanding and Mitigating Distribution Shifts For Machine Learning Force Fields11 Mar 2025
- 2025CrystalFramer: Rethinking the Role of Frames for SE(3)-Invariant Crystal Structure Modeling4 Mar 2025
- 2025Improving the Stability of GNN Force Field Models by Reducing Feature Correlation18 Feb 2025
- 2024Foundational Large Language Models for Materials Research12 Dec 2024
- 2024Deconstructing equivariant representations in molecular systems10 Oct 2024
- 2024A Recipe for Charge Density Prediction29 May 2024
- 2024TorchMD-Net 2.0: Fast Neural Network Potentials for Molecular Simulations27 Feb 2024
- 2024Stability-Aware Training of Machine Learning Force Fields with Differentiable Boltzmann Estimators21 Feb 2024
12 newest of 14 All 14 (JSON)