Geometric Visual Similarity Learning in 3D Medical Image Self-supervised Pre-training
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Abstract (arXiv)
Learning inter-image similarity is crucial for 3D medical images self-supervised pre-training, due to their sharing of numerous same semantic regions. However, the lack of the semantic prior in metrics and the semantic-independent variation in 3D medical images make it challenging to get a reliable measurement for the inter-image similarity, hindering the learning of consistent representation for same semantics. We investigate the challenging problem of this task, i.e., learning a consistent representation between images for a clustering effect of same semantic features. We propose a novel visual similarity learning paradigm, Geometric Visual Similarity Learning, which embeds the prior of topological invariance into the measurement of the inter-image similarity for consistent representation of semantic regions. To drive this paradigm, we further construct a novel geometric matching head, the Z-matching head, to collaboratively learn the global and local similarity of semantic regions, guiding the efficient representation learning for different scale-level inter-image semantic features. Our experiments demonstrate that the pre-training with our learning of inter-image similarity yields more powerful inner-scene, inter-scene, and global-local transferring ability on four challenging 3D medical image tasks. Our codes and pre-trained models will be publicly available on https://github.com/YutingHe-list/GVSL.
Key facts. Cited by 36 papers in the map (data through 7 Oct 2026). Builds on 36 of its 59 references that are in the map. First posted on arXiv 2 Mar 2023.
Builds on
36 of 59 references.
References · 36
- 2014Adam: A Method for Stochastic Optimizationcited by 36,960
- 2019PyTorch: An Imperative Style, High-Performance Deep Learning Librarycited by 20,160
- 2020A Simple Framework for Contrastive Learning of Visual Representationscited by 11,979
- 2019Momentum Contrast for Unsupervised Visual Representation Learningcited by 7,482
- 2015Batch Normalization: Accelerating Deep Network Training by Reducing Internal Covariate Shiftcited by 6,979
- 2020Bootstrap your own latent: A new approach to self-supervised Learningcited by 4,712
- 2020Exploring Simple Siamese Representation Learningcited by 2,853
- 2018Unsupervised Representation Learning by Predicting Image Rotationscited by 1,586
- 2018Group Normalizationcited by 1,514
- 20163D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotationcited by 1,471
- 2016Context Encoders: Feature Learning by Inpaintingcited by 1,424
- 2015Spatial Transformer Networkscited by 1,423
24 more
- 2018Deep Clustering for Unsupervised Learning of Visual Featurescited by 1,020
- 2020Self-supervised Learning: Generative or Contrastivecited by 693
- 2019Self-supervised Visual Feature Learning with Deep Neural Networks: A Surveycited by 656
- 2021Understanding Dimensional Collapse in Contrastive Self-supervised Learningcited by 374
- 2019Models Genesis: Generic Autodidactic Models for 3D Medical Image Analysiscited by 159
- 2017Convolutional neural network architecture for geometric matchingcited by 138
- 2019Deep Learning in Medical Image Registration: A Surveycited by 124
- 2019Evaluation of Algorithms for Multi-Modality Whole Heart Segmentation: An Open-Access Grand Challengecited by 100
- 2021SimCVD: Simple Contrastive Voxel-Wise Representation Distillation for Semi-Supervised Medical Image Segmentationcited by 86
- 2021Transferable Visual Words: Exploiting the Semantics of Anatomical Patterns for Self-supervised Learningcited by 68
- 2020SAM: Self-supervised Learning of Pixel-wise Anatomical Embeddings in Radiological Imagescited by 66
- 2017SCNet: Learning Semantic Correspondencecited by 48
- 2021Revisiting Contrastive Methods for Unsupervised Learning of Visual Representationscited by 48
- 2022XMorpher: Full Transformer for Deformable Medical Image Registration via Cross Attentioncited by 46
- 2023Rethinking Semi-Supervised Medical Image Segmentation: A Variance-Reduction Perspectivecited by 43
- 2020Learning Semantics-enriched Representation via Self-discovery, Self-classification, and Self-restorationcited by 35
- 2022Mine yOur owN Anatomy: Revisiting Medical Image Segmentation with Extremely Limited Labelscited by 30
- 2021Exploring Set Similarity for Dense Self-supervised Representation Learningcited by 29
- 2020LT-Net: Label Transfer by Learning Reversible Voxel-wise Correspondence for One-shot Medical Image Segmentationcited by 28
- 2021Dense Semantic Contrast for Self-Supervised Visual Representation Learningcited by 24
- 2020PADS: Policy-Adapted Sampling for Visual Similarity Learningcited by 20
- 2020Deep Complementary Joint Model for Complex Scene Registration and Few-shot Segmentation on Medical Imagescited by 17
- 2021Modeling the Probabilistic Distribution of Unlabeled Data forOne-shot Medical Image Segmentationcited by 17
- 2022Attributable Visual Similarity Learningcited by 12
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Citing papers per year: 2023: 8; 2024: 11; 2025: 9; 2026: 8.
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