SeeGera: Self-supervised Semi-implicit Graph Variational Auto-encoders with Masking
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Abstract (arXiv)
Generative graph self-supervised learning (SSL) aims to learn node representations by reconstructing the input graph data. However, most existing methods focus on unsupervised learning tasks only and very few work has shown its superiority over the state-of-the-art graph contrastive learning (GCL) models, especially on the classification task. While a very recent model has been proposed to bridge the gap, its performance on unsupervised learning tasks is still unknown. In this paper, to comprehensively enhance the performance of generative graph SSL against other GCL models on both unsupervised and supervised learning tasks, we propose the SeeGera model, which is based on the family of self-supervised variational graph auto-encoder (VGAE). Specifically, SeeGera adopts the semi-implicit variational inference framework, a hierarchical variational framework, and mainly focuses on feature reconstruction and structure/feature masking. On the one hand, SeeGera co-embeds both nodes and features in the encoder and reconstructs both links and features in the decoder. Since feature embeddings contain rich semantic information on features, they can be combined with node embeddings to provide fine-grained knowledge for feature reconstruction. On the other hand, SeeGera adds an additional layer for structure/feature masking to the hierarchical variational framework, which boosts the model generalizability. We conduct extensive experiments comparing SeeGera with 9 other state-of-the-art competitors. Our results show that SeeGera can compare favorably against other state-of-the-art GCL methods in a variety of unsupervised and supervised learning tasks.
Key facts. Cited by 23 papers in the map (data through 7 Oct 2026). Builds on 35 of its 43 references that are in the map. First posted on arXiv 29 Jan 2023.
Builds on
35 of 43 references.
References · 35
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Citing papers per year: 2023: 5; 2024: 13; 2025: 5.
23 papers.
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- 2024Rethinking Graph Masked Autoencoders through Alignment and Uniformitycited by 22
- 2024A Survey on Learning from Graphs with Heterophily: Recent Advances and Future Directionscited by 13
- 2024Masked Graph Autoencoder with Non-discrete Bandwidthscited by 11
- 2023RARE: Robust Masked Graph Autoencodercited by 10
- 2023Generative and Contrastive Paradigms Are Complementary for Graph Self-Supervised Learningcited by 9
- 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspectivecited by 9
- 2023PSP: Pre-Training and Structure Prompt Tuning for Graph Neural Networkscited by 8
- 2024Exploring Correlations of Self-Supervised Tasks for Graphscited by 7
- 2025Hierarchical Vector Quantized Graph Autoencoder with Annealing-Based Code Selectioncited by 5
- 2025CIMAGE: Exploiting the Conditional Independence in Masked Graph Auto-encoderscited by 4
- 2025Discrepancy-Aware Graph Mask Auto-Encodercited by 4
- 2025Graph Positional Autoencoders as Self-supervised Learnerscited by 3
11 more
- 2023Graph Ranking Contrastive Learning: A Extremely Simple yet Efficient Methodcited by 2
- 2024Exploring Task Unification in Graph Representation Learning via Generative Approachcited by 2
- 2024Context-Enhanced Multi-View Trajectory Representation Learning: Bridging the Gap through Self-Supervised Modelscited by 2
- 2023Variational Graph Autoencoder for Heterogeneous Information Networks with Missing and Inaccurate Attributescited by 1
- 2024Semantic Evolvement Enhanced Graph Autoencoder for Rumor Detectioncited by 1
- 2024Hi-GMAE: Hierarchical Graph Masked Autoencoderscited by 1
- 2024Disentangled Generative Graph Representation Learningcited by 1
- 2024Revisiting Graph Autoencoders as Implicit Contrastive Learnerscited by 1
- 2024Preserving Node Distinctness in Graph Autoencoders via Similarity Distillationcited by 0
- 2024Informative Subgraphs Aware Masked Auto-Encoder in Dynamic Graphscited by 0
- 2025IMPA-HGAE:Intra-Meta-Path Augmented Heterogeneous Graph Autoencodercited by 0
- 2025Discrepancy-Aware Graph Mask Auto-Encoder24 Jun 2025
- 2025IMPA-HGAE:Intra-Meta-Path Augmented Heterogeneous Graph Autoencoder7 Jun 2025
- 2025Graph Positional Autoencoders as Self-supervised Learners29 May 2025
- 2025Hierarchical Vector Quantized Graph Autoencoder with Annealing-Based Code Selection17 Apr 2025
- 2025CIMAGE: Exploiting the Conditional Independence in Masked Graph Auto-encoders10 Mar 2025
- 2024Context-Enhanced Multi-View Trajectory Representation Learning: Bridging the Gap through Self-Supervised Models17 Oct 2024
- 2024Revisiting Graph Autoencoders as Implicit Contrastive Learners14 Oct 2024
- 2024Informative Subgraphs Aware Masked Auto-Encoder in Dynamic Graphs14 Sep 2024
- 2024Disentangled Generative Graph Representation Learning24 Aug 2024
- 2024Preserving Node Distinctness in Graph Autoencoders via Similarity Distillation25 Jun 2024
- 2024Hi-GMAE: Hierarchical Graph Masked Autoencoders17 May 2024
- 2024Exploring Correlations of Self-Supervised Tasks for Graphs7 May 2024
11 more
- 2024Semantic Evolvement Enhanced Graph Autoencoder for Rumor Detection24 Apr 2024
- 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspective24 Mar 2024
- 2024Exploring Task Unification in Graph Representation Learning via Generative Approach21 Mar 2024
- 2024Rethinking Graph Masked Autoencoders through Alignment and Uniformity11 Feb 2024
- 2024Masked Graph Autoencoder with Non-discrete Bandwidths6 Feb 2024
- 2024A Survey on Learning from Graphs with Heterophily: Recent Advances and Future Directions18 Jan 2024
- 2023Variational Graph Autoencoder for Heterogeneous Information Networks with Missing and Inaccurate Attributes14 Nov 2023
- 2023PSP: Pre-Training and Structure Prompt Tuning for Graph Neural Networks26 Oct 2023
- 2023Generative and Contrastive Paradigms Are Complementary for Graph Self-Supervised Learning24 Oct 2023
- 2023Graph Ranking Contrastive Learning: A Extremely Simple yet Efficient Method23 Oct 2023
- 2023RARE: Robust Masked Graph Autoencoder4 Apr 2023
- 2024Rethinking Graph Masked Autoencoders through Alignment and Uniformitycited by 22
- 2024A Survey on Learning from Graphs with Heterophily: Recent Advances and Future Directionscited by 13
- 2024Masked Graph Autoencoder with Non-discrete Bandwidthscited by 11
- 2023RARE: Robust Masked Graph Autoencodercited by 10
- 2023Generative and Contrastive Paradigms Are Complementary for Graph Self-Supervised Learningcited by 9
- 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspectivecited by 9
- 2023PSP: Pre-Training and Structure Prompt Tuning for Graph Neural Networkscited by 8
- 2024Exploring Correlations of Self-Supervised Tasks for Graphscited by 7
- 2025Hierarchical Vector Quantized Graph Autoencoder with Annealing-Based Code Selectioncited by 5
- 2025CIMAGE: Exploiting the Conditional Independence in Masked Graph Auto-encoderscited by 4
- 2025Discrepancy-Aware Graph Mask Auto-Encodercited by 4
- 2025Graph Positional Autoencoders as Self-supervised Learnerscited by 3
12 most cited of 23 All 23 (JSON)
- 2025Discrepancy-Aware Graph Mask Auto-Encoder24 Jun 2025
- 2025IMPA-HGAE:Intra-Meta-Path Augmented Heterogeneous Graph Autoencoder7 Jun 2025
- 2025Graph Positional Autoencoders as Self-supervised Learners29 May 2025
- 2025Hierarchical Vector Quantized Graph Autoencoder with Annealing-Based Code Selection17 Apr 2025
- 2025CIMAGE: Exploiting the Conditional Independence in Masked Graph Auto-encoders10 Mar 2025
- 2024Context-Enhanced Multi-View Trajectory Representation Learning: Bridging the Gap through Self-Supervised Models17 Oct 2024
- 2024Revisiting Graph Autoencoders as Implicit Contrastive Learners14 Oct 2024
- 2024Informative Subgraphs Aware Masked Auto-Encoder in Dynamic Graphs14 Sep 2024
- 2024Disentangled Generative Graph Representation Learning24 Aug 2024
- 2024Preserving Node Distinctness in Graph Autoencoders via Similarity Distillation25 Jun 2024
- 2024Hi-GMAE: Hierarchical Graph Masked Autoencoders17 May 2024
- 2024Exploring Correlations of Self-Supervised Tasks for Graphs7 May 2024
12 newest of 23 All 23 (JSON)