Graph Attention Auto-Encoders
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Abstract (arXiv)
Auto-encoders have emerged as a successful framework for unsupervised learning. However, conventional auto-encoders are incapable of utilizing explicit relations in structured data. To take advantage of relations in graph-structured data, several graph auto-encoders have recently been proposed, but they neglect to reconstruct either the graph structure or node attributes. In this paper, we present the graph attention auto-encoder (GATE), a neural network architecture for unsupervised representation learning on graph-structured data. Our architecture is able to reconstruct graph-structured inputs, including both node attributes and the graph structure, through stacked encoder/decoder layers equipped with self-attention mechanisms. In the encoder, by considering node attributes as initial node representations, each layer generates new representations of nodes by attending over their neighbors' representations. In the decoder, we attempt to reverse the encoding process to reconstruct node attributes. Moreover, node representations are regularized to reconstruct the graph structure. Our proposed architecture does not need to know the graph structure upfront, and thus it can be applied to inductive learning. Our experiments demonstrate competitive performance on several node classification benchmark datasets for transductive and inductive tasks, even exceeding the performance of supervised learning baselines in most cases.
Key facts. Cited by 41 papers in the map (data through 14 Oct 2026). First posted on arXiv 26 May 2019.
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Citing papers per year: 2021: 4; 2022: 6; 2023: 14; 2024: 8; 2025: 5; 2026: 4.
41 papers.
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- 2022GraphMAE: Self-Supervised Masked Graph Autoencoderscited by 448
- 2023Graph Mixture of Experts: Learning on Large-Scale Graphs with Explicit Diversity Modelingcited by 64
- 2023SkeletonMAE: Graph-based Masked Autoencoder for Skeleton Sequence Pre-trainingcited by 41
- 2023SeeGera: Self-supervised Semi-implicit Graph Variational Auto-encoders with Maskingcited by 23
- 2023GiGaMAE: Generalizable Graph Masked Autoencoder via Collaborative Latent Space Reconstructioncited by 21
- 2023MAGIC: Detecting Advanced Persistent Threats via Masked Graph Representation Learningcited by 20
- 2024SpeGCL: Self-supervised Graph Spectrum Contrastive Learning without Positive Samplescited by 20
- 2023Motif-aware Attribute Masking for Molecular Graph Pre-trainingcited by 16
- 2023Incomplete Contrastive Multi-View Clustering with High-Confidence Guidingcited by 15
- 2022Wiener Graph Deconvolutional Network Improves Graph Self-Supervised Learningcited by 13
- 2023Generative and Contrastive Paradigms Are Complementary for Graph Self-Supervised Learningcited by 9
- 2021Multilayer Graph Contrastive Clustering Networkcited by 8
29 more
- 2021Mesh-based graph convolutional neural networks for modeling materials with microstructurecited by 7
- 2022NCAGC: A Neighborhood Contrast Framework for Attributed Graph Clusteringcited by 5
- 2023A Comprehensive Survey on Graph Summarization with Graph Neural Networkscited by 4
- 2024Learning Persistent Community Structures in Dynamic Networks via Topological Data Analysiscited by 4
- 2025Graph Positional Autoencoders as Self-supervised Learnerscited by 3
- 2025Graph Representation Learning with Massive Unlabeled Data for Rumor Detectioncited by 3
- 2025LMAE4Eth: Generalizable and Robust Ethereum Fraud Detection by Exploring Transaction Semantics and Masked Graph Embeddingcited by 3
- 2021Wasserstein Adversarially Regularized Graph Autoencodercited by 2
- 2022Reconstructing Humpty Dumpty: Multi-feature Graph Autoencoder for Open Set Action Recognitioncited by 2
- 2024UGMAE: A Unified Framework for Graph Masked Autoencoderscited by 2
- 2024HGAurban: Heterogeneous Graph Autoencoding for Urban Spatial-Temporal Learningcited by 2
- 2021Seeing All From a Few: Nodes Selection Using Graph Pooling for Graph Clusteringcited by 1
- 2022ReGAE: Graph autoencoder based on recursive neural networkscited by 1
- 2023Between-Sample Relationship in Learning Tabular Data Using Graph and Attention Networkscited by 1
- 2023Variational Graph Autoencoder for Heterogeneous Information Networks with Missing and Inaccurate Attributescited by 1
- 2023Unsupervised Graph Attention Autoencoder for Attributed Networks using K-means Losscited by 1
- 2024GraphPub: Generation of Differential Privacy Graph with High Availabilitycited by 1
- 2024Hybrid Ensemble Deep Graph Temporal Clustering for Spatiotemporal Datacited by 1
- 2025Graffe: Graph Representation Learning via Diffusion Probabilistic Modelscited by 1
- 2026Hierarchical Molecular Representation Learning via Fragment-Based Self-Supervised Embedding Predictioncited by 1
- 2022CellTypeGraph: A New Geometric Computer Vision Benchmarkcited by 0
- 2023HAT-GAE: Self-Supervised Graph Auto-encoders with Hierarchical Adaptive Masking and Trainable Corruptioncited by 0
- 2023GATology for Linguistics: What Syntactic Dependencies It Knowscited by 0
- 2024Preserving Node Distinctness in Graph Autoencoders via Similarity Distillationcited by 0
- 2024LASE: Learned Adjacency Spectral Embeddingscited by 0
- 2025Universal Embeddings of Tabular Datacited by 0
- 2026Frequency-Corrupt Based Graph Self-Supervised Learningcited by 0
- 2026Context-Aware Interpretable Representations for Retrieval and Graph Convolutional Network Classificationcited by 0
- 2026α-Graph: Attention-Infused Normalizing Flow Approach to Tractable Graph Modelingcited by 0
- 2026α-Graph: Attention-Infused Normalizing Flow Approach to Tractable Graph Modeling7 Sep 2026
- 2026Context-Aware Interpretable Representations for Retrieval and Graph Convolutional Network Classification29 Aug 2026
- 2026Frequency-Corrupt Based Graph Self-Supervised Learning17 Apr 2026
- 2026Hierarchical Molecular Representation Learning via Fragment-Based Self-Supervised Embedding Prediction23 Feb 2026
- 2025LMAE4Eth: Generalizable and Robust Ethereum Fraud Detection by Exploring Transaction Semantics and Masked Graph Embedding4 Sep 2025
- 2025Graph Representation Learning with Massive Unlabeled Data for Rumor Detection6 Aug 2025
- 2025Universal Embeddings of Tabular Data8 Jul 2025
- 2025Graph Positional Autoencoders as Self-supervised Learners29 May 2025
- 2025Graffe: Graph Representation Learning via Diffusion Probabilistic Models8 May 2025
- 2024LASE: Learned Adjacency Spectral Embeddings23 Dec 2024
- 2024HGAurban: Heterogeneous Graph Autoencoding for Urban Spatial-Temporal Learning14 Oct 2024
- 2024SpeGCL: Self-supervised Graph Spectrum Contrastive Learning without Positive Samples14 Oct 2024
29 more
- 2024Hybrid Ensemble Deep Graph Temporal Clustering for Spatiotemporal Data19 Sep 2024
- 2024Preserving Node Distinctness in Graph Autoencoders via Similarity Distillation25 Jun 2024
- 2024GraphPub: Generation of Differential Privacy Graph with High Availability28 Feb 2024
- 2024UGMAE: A Unified Framework for Graph Masked Autoencoders12 Feb 2024
- 2024Learning Persistent Community Structures in Dynamic Networks via Topological Data Analysis6 Jan 2024
- 2023Incomplete Contrastive Multi-View Clustering with High-Confidence Guiding14 Dec 2023
- 2023Unsupervised Graph Attention Autoencoder for Attributed Networks using K-means Loss21 Nov 2023
- 2023Variational Graph Autoencoder for Heterogeneous Information Networks with Missing and Inaccurate Attributes14 Nov 2023
- 2023Generative and Contrastive Paradigms Are Complementary for Graph Self-Supervised Learning24 Oct 2023
- 2023MAGIC: Detecting Advanced Persistent Threats via Masked Graph Representation Learning15 Oct 2023
- 2023Motif-aware Attribute Masking for Molecular Graph Pre-training8 Sep 2023
- 2023GiGaMAE: Generalizable Graph Masked Autoencoder via Collaborative Latent Space Reconstruction18 Aug 2023
- 2023SkeletonMAE: Graph-based Masked Autoencoder for Skeleton Sequence Pre-training17 Jul 2023
- 2023Between-Sample Relationship in Learning Tabular Data Using Graph and Attention Networks11 Jun 2023
- 2023GATology for Linguistics: What Syntactic Dependencies It Knows22 May 2023
- 2023Graph Mixture of Experts: Learning on Large-Scale Graphs with Explicit Diversity Modeling6 Apr 2023
- 2023A Comprehensive Survey on Graph Summarization with Graph Neural Networks13 Feb 2023
- 2023SeeGera: Self-supervised Semi-implicit Graph Variational Auto-encoders with Masking29 Jan 2023
- 2023HAT-GAE: Self-Supervised Graph Auto-encoders with Hierarchical Adaptive Masking and Trainable Corruption28 Jan 2023
- 2022Reconstructing Humpty Dumpty: Multi-feature Graph Autoencoder for Open Set Action Recognition12 Dec 2022
- 2022Wiener Graph Deconvolutional Network Improves Graph Self-Supervised Learning26 Jun 2022
- 2022NCAGC: A Neighborhood Contrast Framework for Attributed Graph Clustering16 Jun 2022
- 2022GraphMAE: Self-Supervised Masked Graph Autoencoders22 May 2022
- 2022CellTypeGraph: A New Geometric Computer Vision Benchmark17 May 2022
- 2022ReGAE: Graph autoencoder based on recursive neural networks28 Jan 2022
- 2021Multilayer Graph Contrastive Clustering Network28 Dec 2021
- 2021Wasserstein Adversarially Regularized Graph Autoencoder9 Nov 2021
- 2021Mesh-based graph convolutional neural networks for modeling materials with microstructure4 Jun 2021
- 2021Seeing All From a Few: Nodes Selection Using Graph Pooling for Graph Clustering30 Apr 2021
- 2022GraphMAE: Self-Supervised Masked Graph Autoencoderscited by 448
- 2023SkeletonMAE: Graph-based Masked Autoencoder for Skeleton Sequence Pre-trainingcited by 41
- 2023SeeGera: Self-supervised Semi-implicit Graph Variational Auto-encoders with Maskingcited by 23
- 2023GiGaMAE: Generalizable Graph Masked Autoencoder via Collaborative Latent Space Reconstructioncited by 21
- 2023MAGIC: Detecting Advanced Persistent Threats via Masked Graph Representation Learningcited by 20
- 2024SpeGCL: Self-supervised Graph Spectrum Contrastive Learning without Positive Samplescited by 20
- 2023Motif-aware Attribute Masking for Molecular Graph Pre-trainingcited by 16
- 2023Incomplete Contrastive Multi-View Clustering with High-Confidence Guidingcited by 15
- 2022Wiener Graph Deconvolutional Network Improves Graph Self-Supervised Learningcited by 13
- 2023Generative and Contrastive Paradigms Are Complementary for Graph Self-Supervised Learningcited by 9
- 2021Multilayer Graph Contrastive Clustering Networkcited by 8
- 2021Mesh-based graph convolutional neural networks for modeling materials with microstructurecited by 7
12 most cited of 38 All 38 (JSON)
- 2026α-Graph: Attention-Infused Normalizing Flow Approach to Tractable Graph Modeling7 Sep 2026
- 2026Context-Aware Interpretable Representations for Retrieval and Graph Convolutional Network Classification29 Aug 2026
- 2026Frequency-Corrupt Based Graph Self-Supervised Learning17 Apr 2026
- 2026Hierarchical Molecular Representation Learning via Fragment-Based Self-Supervised Embedding Prediction23 Feb 2026
- 2025LMAE4Eth: Generalizable and Robust Ethereum Fraud Detection by Exploring Transaction Semantics and Masked Graph Embedding4 Sep 2025
- 2025Graph Representation Learning with Massive Unlabeled Data for Rumor Detection6 Aug 2025
- 2025Universal Embeddings of Tabular Data8 Jul 2025
- 2025Graph Positional Autoencoders as Self-supervised Learners29 May 2025
- 2024LASE: Learned Adjacency Spectral Embeddings23 Dec 2024
- 2024HGAurban: Heterogeneous Graph Autoencoding for Urban Spatial-Temporal Learning14 Oct 2024
- 2024SpeGCL: Self-supervised Graph Spectrum Contrastive Learning without Positive Samples14 Oct 2024
- 2024Hybrid Ensemble Deep Graph Temporal Clustering for Spatiotemporal Data19 Sep 2024
12 newest of 38 All 38 (JSON)