Semi-Implicit Graph Variational Auto-Encoders
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Abstract (arXiv)
Semi-implicit graph variational auto-encoder (SIG-VAE) is proposed to expand the flexibility of variational graph auto-encoders (VGAE) to model graph data. SIG-VAE employs a hierarchical variational framework to enable neighboring node sharing for better generative modeling of graph dependency structure, together with a Bernoulli-Poisson link decoder. Not only does this hierarchical construction provide a more flexible generative graph model to better capture real-world graph properties, but also does SIG-VAE naturally lead to semi-implicit hierarchical variational inference that allows faithful modeling of implicit posteriors of given graph data, which may exhibit heavy tails, multiple modes, skewness, and rich dependency structures. Compared to VGAE, the derived graph latent representations by SIG-VAE are more interpretable, due to more expressive generative model and more faithful inference enabled by the flexible semi-implicit construction. Extensive experiments with a variety of graph data show that SIG-VAE significantly outperforms state-of-the-art methods on several different graph analytic tasks.
Key facts. Cited by 54 papers in the map (data through 14 Oct 2026). First posted on arXiv 19 Aug 2019.
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Citing papers per year: 2021: 6; 2022: 10; 2023: 13; 2024: 22; 2025: 3.
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- 2021Graph Self-Supervised Learning: A Surveycited by 289
- 2024Score identity Distillation: Exponentially Fast Distillation of Pretrained Diffusion Models for One-Step Generationcited by 214
- 2021Self-Supervised Learning of Graph Neural Networks: A Unified Reviewcited by 184
- 2023Graph Prompt Learning: A Comprehensive Survey and Beyondcited by 61
- 2022A Survey of Pretraining on Graphs: Taxonomy, Methods, and Applicationscited by 23
- 2023SeeGera: Self-supervised Semi-implicit Graph Variational Auto-encoders with Maskingcited by 23
- 2022Modularity-Aware Graph Autoencoders for Joint Community Detection and Link Predictioncited by 22
- 2023MUSE: Multi-View Contrastive Learning for Heterophilic Graphscited by 13
- 2024Graph Diffusion Policy Optimizationcited by 13
- 2024Advancing Graph Generation through Beta Diffusioncited by 13
- 2021Cold Start Similar Artists Ranking with Gravity-Inspired Graph Autoencoderscited by 12
- 2024Masked Graph Autoencoder with Non-discrete Bandwidthscited by 11
38 more
- 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspectivecited by 9
- 2021Mesh-based graph convolutional neural networks for modeling materials with microstructurecited by 7
- 2024Where to Mask: Structure-Guided Masking for Graph Masked Autoencoderscited by 7
- 2024Exploring Correlations of Self-Supervised Tasks for Graphscited by 7
- 2022A Variational Edge Partition Model for Supervised Graph Representation Learningcited by 6
- 2023ASWT-SGNN: Adaptive Spectral Wavelet Transform-based Self-Supervised Graph Neural Networkcited by 5
- 2025Hierarchical Vector Quantized Graph Autoencoder with Annealing-Based Code Selectioncited by 5
- 2023A Contrastive Variational Graph Auto-Encoder for Node Clusteringcited by 4
- 2024Uncertainty Quantification on Graph Learning: A Surveycited by 4
- 2024Signed Graph Autoencoder for Explainable and Polarization-Aware Network Embeddingscited by 4
- 2022MoReL: Multi-omics Relational Learningcited by 3
- 2022Text to Image Synthesis using Stacked Conditional Variational Autoencoders and Conditional Generative Adversarial Networkscited by 3
- 2022Interpretable Node Representation with Attribute Decodingcited by 3
- 2024Leverage Variational Graph Representation For Model Poisoning on Federated Learningcited by 3
- 2024Uncertainty-Aware Deep Neural Representations for Visual Analysis of Vector Field Datacited by 3
- 2024Uncertainty-Informed Volume Visualization using Implicit Neural Representationcited by 3
- 2021Graph Representation Learning via Contrasting Cluster Assignmentscited by 2
- 2023GANN: Graph Alignment Neural Network for Semi-Supervised Learningcited by 2
- 2023Graph Ranking Contrastive Learning: A Extremely Simple yet Efficient Methodcited by 2
- 2024Exploring Task Unification in Graph Representation Learning via Generative Approachcited by 2
- 2024Visual Analysis of Prediction Uncertainty in Neural Networks for Deep Image Synthesiscited by 2
- 2021Exploring the Representational Power of Graph Autoencodercited by 1
- 2022New Frontiers in Graph Autoencoders: Joint Community Detection and Link Predictioncited by 1
- 2023NESS: Node Embeddings from Static SubGraphscited by 1
- 2023Variational Graph Autoencoder for Heterogeneous Information Networks with Missing and Inaccurate Attributescited by 1
- 2023Concept-free Causal Disentanglement with Variational Graph Auto-Encodercited by 1
- 2024Learning Network Representations with Disentangled Graph Auto-Encodercited by 1
- 2024Hi-GMAE: Hierarchical Graph Masked Autoencoderscited by 1
- 2024Self-supervised Graph Neural Network for Mechanical CAD Retrievalcited by 1
- 2024Node Level Graph Autoencoder: Unified Pretraining for Textual Graph Learningcited by 1
- 2024Scalable Weibull Graph Attention Autoencoder for Modeling Document Networkscited by 1
- 2024Revisiting Graph Autoencoders as Implicit Contrastive Learnerscited by 1
- 2022Graph Representation Learning via Aggregation Enhancementcited by 0
- 2022Few-Max: Few-Shot Domain Adaptation for Unsupervised Contrastive Representation Learningcited by 0
- 2022Using Graph Algorithms to Pretrain Graph Completion Transformerscited by 0
- 2023HAT-GAE: Self-Supervised Graph Auto-encoders with Hierarchical Adaptive Masking and Trainable Corruptioncited by 0
- 2023Asymmetric Learning for Graph Neural Network based Link Predictioncited by 0
- 2023Graph Self-Supervised Learning for Endoscopic Image Matchingcited by 0
50 most cited of 54 All 54 (JSON)
- 2025BikeVAE-GNN: A Variational Autoencoder-Augmented Hybrid Graph Neural Network for Sparse Bicycle Volume Estimation18 Jul 2025
- 2025Subgraph Generation for Generalizing on Out-of-Distribution Links15 Jul 2025
- 2025Hierarchical Vector Quantized Graph Autoencoder with Annealing-Based Code Selection17 Apr 2025
- 2024Revisiting Graph Autoencoders as Implicit Contrastive Learners14 Oct 2024
- 2024Scalable Weibull Graph Attention Autoencoder for Modeling Document Networks13 Oct 2024
- 2024Signed Graph Autoencoder for Explainable and Polarization-Aware Network Embeddings16 Sep 2024
- 2024Uncertainty-Informed Volume Visualization using Implicit Neural Representation12 Aug 2024
- 2024Node Level Graph Autoencoder: Unified Pretraining for Textual Graph Learning9 Aug 2024
- 2024Uncertainty-Aware Deep Neural Representations for Visual Analysis of Vector Field Data23 Jul 2024
- 2024Preserving Node Distinctness in Graph Autoencoders via Similarity Distillation25 Jun 2024
- 2024Advancing Graph Generation through Beta Diffusion13 Jun 2024
- 2024Self-supervised Graph Neural Network for Mechanical CAD Retrieval13 Jun 2024
38 more
- 2024Visual Analysis of Prediction Uncertainty in Neural Networks for Deep Image Synthesis22 May 2024
- 2024Hi-GMAE: Hierarchical Graph Masked Autoencoders17 May 2024
- 2024Exploring Correlations of Self-Supervised Tasks for Graphs7 May 2024
- 2024Where to Mask: Structure-Guided Masking for Graph Masked Autoencoders24 Apr 2024
- 2024Leverage Variational Graph Representation For Model Poisoning on Federated Learning23 Apr 2024
- 2024Uncertainty Quantification on Graph Learning: A Survey23 Apr 2024
- 2024Score identity Distillation: Exponentially Fast Distillation of Pretrained Diffusion Models for One-Step Generation5 Apr 2024
- 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspective24 Mar 2024
- 2024Exploring Task Unification in Graph Representation Learning via Generative Approach21 Mar 2024
- 2024Graph Diffusion Policy Optimization26 Feb 2024
- 2024Masked Graph Autoencoder with Non-discrete Bandwidths6 Feb 2024
- 2024Learning Network Representations with Disentangled Graph Auto-Encoder2 Feb 2024
- 2024Masked AutoEncoder for Graph Clustering without Pre-defined Cluster Number k9 Jan 2024
- 2023A Contrastive Variational Graph Auto-Encoder for Node Clustering28 Dec 2023
- 2023ASWT-SGNN: Adaptive Spectral Wavelet Transform-based Self-Supervised Graph Neural Network10 Dec 2023
- 2023Graph Prompt Learning: A Comprehensive Survey and Beyond28 Nov 2023
- 2023Concept-free Causal Disentanglement with Variational Graph Auto-Encoder17 Nov 2023
- 2023Variational Graph Autoencoder for Heterogeneous Information Networks with Missing and Inaccurate Attributes14 Nov 2023
- 2023Graph Ranking Contrastive Learning: A Extremely Simple yet Efficient Method23 Oct 2023
- 2023MUSE: Multi-View Contrastive Learning for Heterophilic Graphs29 Jul 2023
- 2023Graph Self-Supervised Learning for Endoscopic Image Matching19 Jun 2023
- 2023NESS: Node Embeddings from Static SubGraphs15 Mar 2023
- 2023GANN: Graph Alignment Neural Network for Semi-Supervised Learning14 Mar 2023
- 2023Asymmetric Learning for Graph Neural Network based Link Prediction1 Mar 2023
- 2023SeeGera: Self-supervised Semi-implicit Graph Variational Auto-encoders with Masking29 Jan 2023
- 2023HAT-GAE: Self-Supervised Graph Auto-encoders with Hierarchical Adaptive Masking and Trainable Corruption28 Jan 2023
- 2022Interpretable Node Representation with Attribute Decoding3 Dec 2022
- 2022New Frontiers in Graph Autoencoders: Joint Community Detection and Link Prediction16 Nov 2022
- 2022Using Graph Algorithms to Pretrain Graph Completion Transformers14 Oct 2022
- 2022Text to Image Synthesis using Stacked Conditional Variational Autoencoders and Conditional Generative Adversarial Networks6 Jul 2022
- 2022Few-Max: Few-Shot Domain Adaptation for Unsupervised Contrastive Representation Learning21 Jun 2022
- 2022MoReL: Multi-omics Relational Learning15 Mar 2022
- 2022A Survey of Pretraining on Graphs: Taxonomy, Methods, and Applications16 Feb 2022
- 2022A Variational Edge Partition Model for Supervised Graph Representation Learning7 Feb 2022
- 2022Modularity-Aware Graph Autoencoders for Joint Community Detection and Link Prediction2 Feb 2022
- 2022Graph Representation Learning via Aggregation Enhancement30 Jan 2022
- 2021Graph Representation Learning via Contrasting Cluster Assignments15 Dec 2021
- 2021Cold Start Similar Artists Ranking with Gravity-Inspired Graph Autoencoders2 Aug 2021
50 newest of 54 All 54 (JSON)
- 2021Graph Self-Supervised Learning: A Surveycited by 289
- 2021Self-Supervised Learning of Graph Neural Networks: A Unified Reviewcited by 184
- 2023Graph Prompt Learning: A Comprehensive Survey and Beyondcited by 61
- 2022A Survey of Pretraining on Graphs: Taxonomy, Methods, and Applicationscited by 23
- 2023SeeGera: Self-supervised Semi-implicit Graph Variational Auto-encoders with Maskingcited by 23
- 2022Modularity-Aware Graph Autoencoders for Joint Community Detection and Link Predictioncited by 22
- 2023MUSE: Multi-View Contrastive Learning for Heterophilic Graphscited by 13
- 2021Cold Start Similar Artists Ranking with Gravity-Inspired Graph Autoencoderscited by 12
- 2024Masked Graph Autoencoder with Non-discrete Bandwidthscited by 11
- 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspectivecited by 9
- 2021Mesh-based graph convolutional neural networks for modeling materials with microstructurecited by 7
- 2024Where to Mask: Structure-Guided Masking for Graph Masked Autoencoderscited by 7
12 most cited of 50 All 50 (JSON)
- 2025BikeVAE-GNN: A Variational Autoencoder-Augmented Hybrid Graph Neural Network for Sparse Bicycle Volume Estimation18 Jul 2025
- 2025Subgraph Generation for Generalizing on Out-of-Distribution Links15 Jul 2025
- 2025Hierarchical Vector Quantized Graph Autoencoder with Annealing-Based Code Selection17 Apr 2025
- 2024Revisiting Graph Autoencoders as Implicit Contrastive Learners14 Oct 2024
- 2024Scalable Weibull Graph Attention Autoencoder for Modeling Document Networks13 Oct 2024
- 2024Signed Graph Autoencoder for Explainable and Polarization-Aware Network Embeddings16 Sep 2024
- 2024Uncertainty-Informed Volume Visualization using Implicit Neural Representation12 Aug 2024
- 2024Node Level Graph Autoencoder: Unified Pretraining for Textual Graph Learning9 Aug 2024
- 2024Uncertainty-Aware Deep Neural Representations for Visual Analysis of Vector Field Data23 Jul 2024
- 2024Self-supervised Graph Neural Network for Mechanical CAD Retrieval13 Jun 2024
- 2024Visual Analysis of Prediction Uncertainty in Neural Networks for Deep Image Synthesis22 May 2024
- 2024Hi-GMAE: Hierarchical Graph Masked Autoencoders17 May 2024
12 newest of 50 All 50 (JSON)