mlsanityData to 14 Oct 2026

Hierarchical Graph Transformer with Adaptive Node Sampling

arXiv 2210.03930 ↗First posted 8 Oct 2022cs.LG cs.AIcited by 72

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Abstract (arXiv)

The Transformer architecture has achieved remarkable success in a number of domains including natural language processing and computer vision. However, when it comes to graph-structured data, transformers have not achieved competitive performance, especially on large graphs. In this paper, we identify the main deficiencies of current graph transformers:(1) Existing node sampling strategies in Graph Transformers are agnostic to the graph characteristics and the training process. (2) Most sampling strategies only focus on local neighbors and neglect the long-range dependencies in the graph. We conduct experimental investigations on synthetic datasets to show that existing sampling strategies are sub-optimal. To tackle the aforementioned problems, we formulate the optimization strategies of node sampling in Graph Transformer as an adversary bandit problem, where the rewards are related to the attention weights and can vary in the training procedure. Meanwhile, we propose a hierarchical attention scheme with graph coarsening to capture the long-range interactions while reducing computational complexity. Finally, we conduct extensive experiments on real-world datasets to demonstrate the superiority of our method over existing graph transformers and popular GNNs.

Key facts. Cited by 72 papers in the map (data through 14 Oct 2026). Builds on 35 of its 61 references that are in the map. First posted on arXiv 8 Oct 2022.

Builds on

35 of 61 references.

References · 35

  1. 2017Attention Is All You Needcited by 60,361
  2. 2018BERT: Pre-training of Deep Bidirectional Transformers for Language Understandingcited by 40,399
  3. 2020An Image is Worth 16x16 Words: Transformers for Image Recognition at Scalecited by 30,186
  4. 2021Swin Transformer: Hierarchical Vision Transformer using Shifted Windowscited by 12,139
  5. 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,361
  6. 2017Graph Attention Networkscited by 8,923
  7. 2017Inductive Representation Learning on Large Graphscited by 6,320
  8. 2020Longformer: The Long-Document Transformercited by 3,413
  9. 2020Open Graph Benchmark: Datasets for Machine Learning on Graphscited by 2,163
  10. 2020Reformer: The Efficient Transformercited by 1,668
  11. 2020Linformer: Self-Attention with Linear Complexitycited by 1,474
  12. 2018Predict then Propagate: Graph Neural Networks meet Personalized PageRankcited by 993
23 more
  1. 2018Representation Learning on Graphs with Jumping Knowledge Networkscited by 877
  2. 2020Geom-GCN: Geometric Graph Convolutional Networkscited by 826
  3. 2020Efficient Transformers: A Surveycited by 790
  4. 2020A Generalization of Transformer Networks to Graphscited by 661
  5. 2020Adaptive Universal Generalized PageRank Graph Neural Networkcited by 595
  6. 2018FastGCN: Fast Learning with Graph Convolutional Networks via Importance Samplingcited by 584
  7. 2021Rethinking Graph Transformers with Spectral Attentioncited by 473
  8. 2020Efficient Content-Based Sparse Attention with Routing Transformerscited by 471
  9. 2020A Transformer-based Framework for Multivariate Time Series Representation Learningcited by 453
  10. 2021Do Transformers Really Perform Bad for Graph Representation?cited by 320
  11. 2021Focal Self-attention for Local-Global Interactions in Vision Transformerscited by 288
  12. 2018Adaptive Sampling Towards Fast Graph Representation Learningcited by 180
  13. 2019Layer-Dependent Importance Sampling for Training Deep and Large Graph Convolutional Networkscited by 177
  14. 2020Graph-Bert: Only Attention is Needed for Learning Graph Representationscited by 177
  15. 2021Motif-based Graph Self-Supervised Learning for Molecular Property Predictioncited by 159
  16. 2021ProtGNN: Towards Self-Explaining Graph Neural Networkscited by 96
  17. 2021Scaling Up Graph Neural Networks Via Graph Coarseningcited by 80
  18. 2021Gophormer: Ego-Graph Transformer for Node Classificationcited by 63
  19. 2021Adaptive Transfer Learning on Graph Neural Networkscited by 31
  20. 2020Bandit Samplers for Training Graph Neural Networkscited by 30
  21. 2022Model Inversion Attacks against Graph Neural Networkscited by 26
  22. 2020SAC: Accelerating and Structuring Self-Attention via Sparse Adaptive Connectioncited by 13
  23. 2022Transformer with Memory Replaycited by 2

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Cited by year (2026 to 14 Oct)

Citing papers per year: 2022: 2; 2023: 19; 2024: 33; 2025: 13; 2026: 5.

72 papers.

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  1. 2023Language is All a Graph Needscited by 220
  2. 2023SGFormer: Simplifying and Empowering Transformers for Large-Graph Representationscited by 133
  3. 2022A Generalization of ViT/MLP-Mixer to Graphscited by 93
  4. 2024Graph Mamba: Towards Learning on Graphs with State Space Modelscited by 86
  5. 2024Classic GNNs are Strong Baselines: Reassessing GNNs for Node Classificationcited by 85
  6. 2024Polynormer: Polynomial-Expressive Graph Transformer in Linear Timecited by 65
  7. 2023Backdoor Defense via Deconfounded Representation Learningcited by 38
  8. 2022Explaining the Explainers in Graph Neural Networks: a Comparative Studycited by 35
  9. 2024VCR-Graphormer: A Mini-batch Graph Transformer via Virtual Connectionscited by 34
  10. 2025Relational Graph Transformercited by 34
  11. 2024Graph Transformers: A Surveycited by 32
  12. 2024FairGT: A Fairness-aware Graph Transformercited by 29
38 more
  1. 2023Learning Subpocket Prototypes for Generalizable Structure-based Drug Designcited by 25
  2. 2024Graph Neural Networks for Financial Fraud Detection: A Reviewcited by 25
  3. 2025Relational Deep Learning: Challenges, Foundations and Next-Generation Architecturescited by 23
  4. 2023Data-centric Graph Learning: A Surveycited by 22
  5. 2023On Structural Expressive Power of Graph Transformerscited by 19
  6. 2023Hierarchical Transformer for Scalable Graph Learningcited by 17
  7. 2024HIGHT: Hierarchical Graph Tokenization for Molecule-Language Alignmentcited by 17
  8. 2023Enhancing Graph Transformers with Hierarchical Distance Structural Encodingcited by 16
  9. 2023Transitivity-Preserving Graph Representation Learning for Bridging Local Connectivity and Role-based Similaritycited by 14
  10. 2024What Improves the Generalization of Graph Transformers? A Theoretical Dive into the Self-attention and Positional Encodingcited by 14
  11. 2024GraphFM: A generalist graph transformer that learns transferable representations across diverse domainscited by 14
  12. 2025A Survey of Graph Transformers: Architectures, Theories and Applicationscited by 14
  13. 2024Topology-Informed Graph Transformercited by 13
  14. 2024Locality-Sensitive Hashing-Based Efficient Point Transformer with Applications in High-Energy Physicscited by 12
  15. 2023An Equivariant Generative Framework for Molecular Graph-Structure Co-Designcited by 10
  16. 2023A Hierarchical Spatial Transformer for Massive Point Samples in Continuous Spacecited by 10
  17. 2023Graph Transformers for Large Graphscited by 10
  18. 2024Leveraging Contrastive Learning for Enhanced Node Representations in Tokenized Graph Transformerscited by 9
  19. 2024Graph Coarsening via Supervised Granular-Ball for Scalable Graph Neural Network Trainingcited by 9
  20. 2024Cluster-wise Graph Transformer with Dual-granularity Kernelized Attentioncited by 8
  21. 2023Reinforcement Neighborhood Selection for Unsupervised Graph Anomaly Detectioncited by 7
  22. 2024A Survey on Structure-Preserving Graph Transformerscited by 7
  23. 2024Generalizing Graph Transformers Across Diverse Graphs and Tasks via Pre-trainingcited by 7
  24. 2024A Comprehensive Benchmark on Spectral GNNs: The Impact on Efficiency, Memory, and Effectivenesscited by 6
  25. 2025GraphPrompter: Multi-stage Adaptive Prompt Optimization for Graph In-Context Learningcited by 6
  26. 2025Improving the Effective Receptive Field of Message-Passing Neural Networkscited by 6
  27. 2023AGFormer: Efficient Graph Representation with Anchor-Graph Transformercited by 5
  28. 2023SignGT: Signed Attention-based Graph Transformer for Graph Representation Learningcited by 5
  29. 2024FedGT: Federated Node Classification with Scalable Graph Transformercited by 5
  30. 2024Next Level Message-Passing with Hierarchical Support Graphscited by 5
  31. 2024NTFormer: A Composite Node Tokenized Graph Transformer for Node Classificationcited by 5
  32. 2025Rethinking Tokenized Graph Transformers for Node Classificationcited by 5
  33. 2023Tokenized Graph Transformer with Neighborhood Augmentation for Node Classification in Large Graphscited by 4
  34. 2024A Scalable and Effective Alternative to Graph Transformerscited by 4
  35. 2024Towards Few-shot Self-explaining Graph Neural Networkscited by 4
  36. 2024Mixture of Experts Meets Decoupled Message Passing: Towards General and Adaptive Node Classificationcited by 4
  37. 2023Exploring Sparsity in Graph Transformerscited by 3
  38. 2024SpikeGraphormer: A High-Performance Graph Transformer with Spiking Graph Attentioncited by 3

50 most cited of 72 All 72 (JSON)