Hierarchical Graph Transformer with Adaptive Node Sampling
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Abstract (arXiv)
The Transformer architecture has achieved remarkable success in a number of domains including natural language processing and computer vision. However, when it comes to graph-structured data, transformers have not achieved competitive performance, especially on large graphs. In this paper, we identify the main deficiencies of current graph transformers:(1) Existing node sampling strategies in Graph Transformers are agnostic to the graph characteristics and the training process. (2) Most sampling strategies only focus on local neighbors and neglect the long-range dependencies in the graph. We conduct experimental investigations on synthetic datasets to show that existing sampling strategies are sub-optimal. To tackle the aforementioned problems, we formulate the optimization strategies of node sampling in Graph Transformer as an adversary bandit problem, where the rewards are related to the attention weights and can vary in the training procedure. Meanwhile, we propose a hierarchical attention scheme with graph coarsening to capture the long-range interactions while reducing computational complexity. Finally, we conduct extensive experiments on real-world datasets to demonstrate the superiority of our method over existing graph transformers and popular GNNs.
Key facts. Cited by 72 papers in the map (data through 14 Oct 2026). Builds on 35 of its 61 references that are in the map. First posted on arXiv 8 Oct 2022.
Builds on
35 of 61 references.
References · 35
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- 2020An Image is Worth 16x16 Words: Transformers for Image Recognition at Scalecited by 30,186
- 2021Swin Transformer: Hierarchical Vision Transformer using Shifted Windowscited by 12,139
- 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,361
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- 2017Inductive Representation Learning on Large Graphscited by 6,320
- 2020Longformer: The Long-Document Transformercited by 3,413
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- 2020Reformer: The Efficient Transformercited by 1,668
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- 2018Predict then Propagate: Graph Neural Networks meet Personalized PageRankcited by 993
23 more
- 2018Representation Learning on Graphs with Jumping Knowledge Networkscited by 877
- 2020Geom-GCN: Geometric Graph Convolutional Networkscited by 826
- 2020Efficient Transformers: A Surveycited by 790
- 2020A Generalization of Transformer Networks to Graphscited by 661
- 2020Adaptive Universal Generalized PageRank Graph Neural Networkcited by 595
- 2018FastGCN: Fast Learning with Graph Convolutional Networks via Importance Samplingcited by 584
- 2021Rethinking Graph Transformers with Spectral Attentioncited by 473
- 2020Efficient Content-Based Sparse Attention with Routing Transformerscited by 471
- 2020A Transformer-based Framework for Multivariate Time Series Representation Learningcited by 453
- 2021Do Transformers Really Perform Bad for Graph Representation?cited by 320
- 2021Focal Self-attention for Local-Global Interactions in Vision Transformerscited by 288
- 2018Adaptive Sampling Towards Fast Graph Representation Learningcited by 180
- 2019Layer-Dependent Importance Sampling for Training Deep and Large Graph Convolutional Networkscited by 177
- 2020Graph-Bert: Only Attention is Needed for Learning Graph Representationscited by 177
- 2021Motif-based Graph Self-Supervised Learning for Molecular Property Predictioncited by 159
- 2021ProtGNN: Towards Self-Explaining Graph Neural Networkscited by 96
- 2021Scaling Up Graph Neural Networks Via Graph Coarseningcited by 80
- 2021Gophormer: Ego-Graph Transformer for Node Classificationcited by 63
- 2021Adaptive Transfer Learning on Graph Neural Networkscited by 31
- 2020Bandit Samplers for Training Graph Neural Networkscited by 30
- 2022Model Inversion Attacks against Graph Neural Networkscited by 26
- 2020SAC: Accelerating and Structuring Self-Attention via Sparse Adaptive Connectioncited by 13
- 2022Transformer with Memory Replaycited by 2
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Citing papers per year: 2022: 2; 2023: 19; 2024: 33; 2025: 13; 2026: 5.
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- 2023Language is All a Graph Needscited by 220
- 2023SGFormer: Simplifying and Empowering Transformers for Large-Graph Representationscited by 133
- 2022A Generalization of ViT/MLP-Mixer to Graphscited by 93
- 2024Graph Mamba: Towards Learning on Graphs with State Space Modelscited by 86
- 2024Classic GNNs are Strong Baselines: Reassessing GNNs for Node Classificationcited by 85
- 2024Polynormer: Polynomial-Expressive Graph Transformer in Linear Timecited by 65
- 2023Backdoor Defense via Deconfounded Representation Learningcited by 38
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- 2025Relational Graph Transformercited by 34
- 2024Graph Transformers: A Surveycited by 32
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- 2024HIGHT: Hierarchical Graph Tokenization for Molecule-Language Alignmentcited by 17
- 2023Enhancing Graph Transformers with Hierarchical Distance Structural Encodingcited by 16
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- 2024What Improves the Generalization of Graph Transformers? A Theoretical Dive into the Self-attention and Positional Encodingcited by 14
- 2024GraphFM: A generalist graph transformer that learns transferable representations across diverse domainscited by 14
- 2025A Survey of Graph Transformers: Architectures, Theories and Applicationscited by 14
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- 2024Locality-Sensitive Hashing-Based Efficient Point Transformer with Applications in High-Energy Physicscited by 12
- 2023An Equivariant Generative Framework for Molecular Graph-Structure Co-Designcited by 10
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- 2024Leveraging Contrastive Learning for Enhanced Node Representations in Tokenized Graph Transformerscited by 9
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- 2024Cluster-wise Graph Transformer with Dual-granularity Kernelized Attentioncited by 8
- 2023Reinforcement Neighborhood Selection for Unsupervised Graph Anomaly Detectioncited by 7
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- 2025GraphPrompter: Multi-stage Adaptive Prompt Optimization for Graph In-Context Learningcited by 6
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- 2023AGFormer: Efficient Graph Representation with Anchor-Graph Transformercited by 5
- 2023SignGT: Signed Attention-based Graph Transformer for Graph Representation Learningcited by 5
- 2024FedGT: Federated Node Classification with Scalable Graph Transformercited by 5
- 2024Next Level Message-Passing with Hierarchical Support Graphscited by 5
- 2024NTFormer: A Composite Node Tokenized Graph Transformer for Node Classificationcited by 5
- 2025Rethinking Tokenized Graph Transformers for Node Classificationcited by 5
- 2023Tokenized Graph Transformer with Neighborhood Augmentation for Node Classification in Large Graphscited by 4
- 2024A Scalable and Effective Alternative to Graph Transformerscited by 4
- 2024Towards Few-shot Self-explaining Graph Neural Networkscited by 4
- 2024Mixture of Experts Meets Decoupled Message Passing: Towards General and Adaptive Node Classificationcited by 4
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50 most cited of 72 All 72 (JSON)
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- 2026Learning How Much to Think: Difficulty-Aware Dynamic MoEs for Graph Node Classification13 Apr 2026
- 2026Weighted Graph Clustering via Scale Contraction and Graph Structure Learning24 Jan 2026
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- 2025HeSRN: Representation Learning On Heterogeneous Graphs via Slot-Aware Retentive Network10 Oct 2025
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- 2025Improving the Effective Receptive Field of Message-Passing Neural Networks29 May 2025
- 2025DAM-GT: Dual Positional Encoding-Based Attention Masking Graph Transformer for Node Classification23 May 2025
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- 2025A Survey of Graph Transformers: Architectures, Theories and Applications23 Feb 2025
- 2025Rethinking Tokenized Graph Transformers for Node Classification12 Feb 2025
- 2025CHAT: Beyond Contrastive Graph Transformer for Link Prediction in Heterogeneous Networks6 Jan 2025
- 2024Tokenphormer: Structure-aware Multi-token Graph Transformer for Node Classification19 Dec 2024
- 2024Graph Coarsening via Supervised Granular-Ball for Scalable Graph Neural Network Training18 Dec 2024
- 2024Mixture of Experts Meets Decoupled Message Passing: Towards General and Adaptive Node Classification11 Dec 2024
- 2024Graph Neural Networks for Financial Fraud Detection: A Review1 Nov 2024
- 2024Rethinking Graph Transformer Architecture Design for Node Classification15 Oct 2024
- 2024Cluster-wise Graph Transformer with Dual-granularity Kernelized Attention9 Oct 2024
- 2024SGFormer: Single-Layer Graph Transformers with Approximation-Free Linear Complexity13 Sep 2024
- 2024Towards Few-shot Self-explaining Graph Neural Networks14 Aug 2024
- 2024GraphFM: A generalist graph transformer that learns transferable representations across diverse domains16 Jul 2024
- 2024Learning a Mini-batch Graph Transformer via Two-stage Interaction Augmentation13 Jul 2024
- 2024Graph Transformers: A Survey13 Jul 2024
- 2024Generalizing Graph Transformers Across Diverse Graphs and Tasks via Pre-training4 Jul 2024
- 2024Leveraging Contrastive Learning for Enhanced Node Representations in Tokenized Graph Transformers27 Jun 2024
- 2024NTFormer: A Composite Node Tokenized Graph Transformer for Node Classification27 Jun 2024
- 2024Next Level Message-Passing with Hierarchical Support Graphs22 Jun 2024
- 2024HIGHT: Hierarchical Graph Tokenization for Molecule-Language Alignment20 Jun 2024
- 2024A Scalable and Effective Alternative to Graph Transformers17 Jun 2024
- 2024A Comprehensive Benchmark on Spectral GNNs: The Impact on Efficiency, Memory, and Effectiveness14 Jun 2024
- 2024Classic GNNs are Strong Baselines: Reassessing GNNs for Node Classification13 Jun 2024
- 2024What Improves the Generalization of Graph Transformers? A Theoretical Dive into the Self-attention and Positional Encoding4 Jun 2024
- 2024GLADformer: A Mixed Perspective for Graph-level Anomaly Detection2 Jun 2024
- 2024Acceleration Algorithms in GNNs: A Survey7 May 2024
- 2024AnchorGT: Efficient and Flexible Attention Architecture for Scalable Graph Transformers6 May 2024
- 2024Less is More: on the Over-Globalizing Problem in Graph Transformers2 May 2024
- 2024FairGT: A Fairness-aware Graph Transformer26 Apr 2024
- 2024VCR-Graphormer: A Mini-batch Graph Transformer via Virtual Connections24 Mar 2024
- 2024SpikeGraphormer: A High-Performance Graph Transformer with Spiking Graph Attention21 Mar 2024
- 2024Polynormer: Polynomial-Expressive Graph Transformer in Linear Time2 Mar 2024
- 2024Locality-Sensitive Hashing-Based Efficient Point Transformer with Applications in High-Energy Physics19 Feb 2024
- 2024Graph Mamba: Towards Learning on Graphs with State Space Models13 Feb 2024
- 2024Topology-Informed Graph Transformer3 Feb 2024
- 2024A Survey on Structure-Preserving Graph Transformers29 Jan 2024
50 newest of 72 All 72 (JSON)
- 2023Language is All a Graph Needscited by 220
- 2023SGFormer: Simplifying and Empowering Transformers for Large-Graph Representationscited by 133
- 2022A Generalization of ViT/MLP-Mixer to Graphscited by 93
- 2024Classic GNNs are Strong Baselines: Reassessing GNNs for Node Classificationcited by 85
- 2024Polynormer: Polynomial-Expressive Graph Transformer in Linear Timecited by 65
- 2023Backdoor Defense via Deconfounded Representation Learningcited by 38
- 2022Explaining the Explainers in Graph Neural Networks: a Comparative Studycited by 35
- 2024VCR-Graphormer: A Mini-batch Graph Transformer via Virtual Connectionscited by 34
- 2025Relational Graph Transformercited by 34
- 2024Graph Transformers: A Surveycited by 32
- 2024FairGT: A Fairness-aware Graph Transformercited by 29
- 2023Learning Subpocket Prototypes for Generalizable Structure-based Drug Designcited by 25
12 most cited of 69 All 69 (JSON)
- 2026MegaGraph: Towards Efficient Training of Large-Scale Graph Transformers with Automated Hybrid Parallelism28 Sep 2026
- 2026TypeBandit: Type-Level Context Allocation and Reweighting for Effective Attribute Completion in Heterogeneous Graph Neural Networks30 Apr 2026
- 2026Weighted Graph Clustering via Scale Contraction and Graph Structure Learning24 Jan 2026
- 2026Graph Integrated Transformers for Community Detection in Social Networks7 Jan 2026
- 2025HeSRN: Representation Learning On Heterogeneous Graphs via Slot-Aware Retentive Network10 Oct 2025
- 2025Invariant Graph Transformer for Out-of-Distribution Generalization1 Aug 2025
- 2025Graph Lineages and Skeletal Graph Products31 Jul 2025
- 2025Relational Deep Learning: Challenges, Foundations and Next-Generation Architectures19 Jun 2025
- 2025Toward a Graph Foundation Model: Pre-Training Transformers With Random Walks17 Jun 2025
- 2025Improving the Effective Receptive Field of Message-Passing Neural Networks29 May 2025
- 2025DAM-GT: Dual Positional Encoding-Based Attention Masking Graph Transformer for Node Classification23 May 2025
- 2025Relational Graph Transformer16 May 2025
12 newest of 69 All 69 (JSON)