Rethinking Tokenized Graph Transformers for Node Classification
Not on the map. Why?
Abstract (arXiv)
Node tokenized graph Transformers (GTs) have shown promising performance in node classification. The generation of token sequences is the key module in existing tokenized GTs which transforms the input graph into token sequences, facilitating the node representation learning via Transformer. In this paper, we observe that the generations of token sequences in existing GTs only focus on the first-order neighbors on the constructed similarity graphs, which leads to the limited usage of nodes to generate diverse token sequences, further restricting the potential of tokenized GTs for node classification. To this end, we propose a new method termed SwapGT. SwapGT first introduces a novel token swapping operation based on the characteristics of token sequences that fully leverages the semantic relevance of nodes to generate more informative token sequences. Then, SwapGT leverages a Transformer-based backbone to learn node representations from the generated token sequences. Moreover, SwapGT develops a center alignment loss to constrain the representation learning from multiple token sequences, further enhancing the model performance. Extensive empirical results on various datasets showcase the superiority of SwapGT for node classification.
Key facts. Cited by 5 papers in the map (data through 7 Oct 2026). Builds on 31 of its 42 references that are in the map. First posted on arXiv 12 Feb 2025.
Builds on
31 of 42 references.
References · 31
- 2017Attention Is All You Needcited by 59,932
- 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,282
- 2017Graph Attention Networkscited by 8,854
- 2019Simplifying Graph Convolutional Networkscited by 1,470
- 2018Predict then Propagate: Graph Neural Networks meet Personalized PageRankcited by 987
- 2018Representation Learning on Graphs with Jumping Knowledge Networkscited by 875
- 2020Simple and Deep Graph Convolutional Networkscited by 857
- 2020Geom-GCN: Geometric Graph Convolutional Networkscited by 821
- 2021How Attentive are Graph Attention Networks?cited by 818
- 2019Heterogeneous Graph Attention Networkcited by 732
- 2022Recipe for a General, Powerful, Scalable Graph Transformercited by 702
- 2020Adaptive Universal Generalized PageRank Graph Neural Networkcited by 592
19 more
- 2019Measuring and Relieving the Over-smoothing Problem for Graph Neural Networks from the Topological Viewcited by 544
- 2019MixHop: Higher-Order Graph Convolutional Architectures via Sparsified Neighborhood Mixingcited by 442
- 2021Beyond Low-frequency Information in Graph Convolutional Networkscited by 361
- 2023A critical look at the evaluation of GNNs under heterophily: Are we really making progress?cited by 332
- 2023NodeFormer: A Scalable Graph Structure Learning Transformer for Node Classificationcited by 207
- 2022Finding Global Homophily in Graph Neural Networks When Meeting Heterophilycited by 179
- 2022Revisiting Heterophily For Graph Neural Networkscited by 169
- 2022NAGphormer: A Tokenized Graph Transformer for Node Classification in Large Graphscited by 137
- 2023SGFormer: Simplifying and Empowering Transformers for Large-Graph Representationscited by 131
- 2020AM-GCN: Adaptive Multi-channel Graph Convolutional Networkscited by 121
- 2023Specformer: Spectral Graph Neural Networks Meet Transformerscited by 102
- 2022Hierarchical Graph Transformer with Adaptive Node Samplingcited by 72
- 2024Polynormer: Polynomial-Expressive Graph Transformer in Linear Timecited by 64
- 2021Gophormer: Ego-Graph Transformer for Node Classificationcited by 63
- 2024VCR-Graphormer: A Mini-batch Graph Transformer via Virtual Connectionscited by 34
- 2021Block Modeling-Guided Graph Convolutional Neural Networkscited by 32
- 2024PolyFormer: Scalable Node-wise Filters via Polynomial Graph Transformercited by 10
- 2023SignGT: Signed Attention-based Graph Transformer for Graph Representation Learningcited by 5
- 2024NTFormer: A Composite Node Tokenized Graph Transformer for Node Classificationcited by 5
Built on by
Citing papers per year: 2025: 2; 2026: 3.
5 papers.
- 2025Towards Effective Federated Graph Foundation Model via Mitigating Knowledge Entanglementcited by 14
- 2025A Survey of Graph Transformers: Architectures, Theories and Applicationscited by 12
- 2026MM-OpenFGL: A Comprehensive Benchmark for Multimodal Federated Graph Learningcited by 11
- 2026Rethinking Federated Graph Foundation Models: A Graph-Language Alignment-based Approachcited by 2
- 2026Scaling GraphLLM with Bilevel-Optimized Sparse Queryingcited by 0
- 2026Scaling GraphLLM with Bilevel-Optimized Sparse Querying30 Jan 2026
- 2026MM-OpenFGL: A Comprehensive Benchmark for Multimodal Federated Graph Learning29 Jan 2026
- 2026Rethinking Federated Graph Foundation Models: A Graph-Language Alignment-based Approach29 Jan 2026
- 2025Towards Effective Federated Graph Foundation Model via Mitigating Knowledge Entanglement19 May 2025
- 2025A Survey of Graph Transformers: Architectures, Theories and Applications23 Feb 2025
Similar, not cited
Close in wording, no citation either way
- 2025From Sequence to Structure: Uncovering Substructure Reasoning in Transformers
- 2024Graph Linearization Methods for Reasoning on Graphs with Large Language Models
- 2024MLDGG: Meta-Learning for Domain Generalization on Graphs
- 2024Similarity-based Neighbor Selection for Graph LLMs
- 2025Message-Passing State-Space Models: Improving Graph Learning with Modern Sequence Modeling
- 2023Diffusion Probabilistic Models for Structured Node Classification
- 2024GraphInstruct: Empowering Large Language Models with Graph Understanding and Reasoning Capability
- 2023Towards Fine-Grained Explainability for Heterogeneous Graph Neural Network