On the effectiveness of persistent homology
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Abstract (arXiv)
Persistent homology (PH) is one of the most popular methods in Topological Data Analysis. Even though PH has been used in many different types of applications, the reasons behind its success remain elusive; in particular, it is not known for which classes of problems it is most effective, or to what extent it can detect geometric or topological features. The goal of this work is to identify some types of problems where PH performs well or even better than other methods in data analysis. We consider three fundamental shape analysis tasks: the detection of the number of holes, curvature and convexity from 2D and 3D point clouds sampled from shapes. Experiments demonstrate that PH is successful in these tasks, outperforming several baselines, including PointNet, an architecture inspired precisely by the properties of point clouds. In addition, we observe that PH remains effective for limited computational resources and limited training data, as well as out-of-distribution test data, including various data transformations and noise. For convexity detection, we provide a theoretical guarantee that PH is effective for this task in ℝd, and demonstrate the detection of a convexity measure on the FLAVIA data set of plant leaf images. Due to the crucial role of shape classification in understanding mathematical and physical structures and objects, and in many applications, the findings of this work will provide some knowledge about the types of problems that are appropriate for PH, so that it can - to borrow the words from Wigner 1960 - ``remain valid in future research, and extend, to our pleasure", but to our lesser bafflement, to a variety of applications.
Key facts. Cited by 20 papers in the map (data through 14 Oct 2026). Builds on 35 of its 123 references that are in the map. First posted on arXiv 21 Jun 2022.
Builds on
35 of 123 references.
References · 35
- 2016PointNet: Deep Learning on Point Sets for 3D Classification and Segmentationcited by 5,248
- 2015Persistence Images: A Stable Vector Representation of Persistent Homologycited by 236
- 2019Topology-Preserving Deep Image Segmentationcited by 198
- 2019A Topological Loss Function for Deep-Learning based Image Segmentation using Persistent Homologycited by 134
- 2015A roadmap for the computation of persistent homologycited by 127
- 2019PersLay: A Neural Network Layer for Persistence Diagrams and New Graph Topological Signaturescited by 126
- 2019Ripser: efficient computation of Vietoris-Rips persistence barcodescited by 117
- 2017Deep Learning with Topological Signaturescited by 114
- 2020Topology of deep neural networkscited by 112
- 2017PCPNET: Learning Local Shape Properties from Raw Point Cloudscited by 98
- 2019A Topology Layer for Machine Learningcited by 80
- 2019Rotation Invariant Convolutions for 3D Point Clouds Deep Learningcited by 80
23 more
- 2018A Topological Regularizer for Classifiers via Persistent Homologycited by 63
- 2021Link Prediction with Persistent Homology: An Interactive Viewcited by 37
- 2019Explicit topological priors for deep-learning based image segmentation using persistent homologycited by 30
- 2014Robust Topological Inference: Distance To a Measure and Kernel Distancecited by 26
- 2019Persistent homology detects curvaturecited by 26
- 2019A Topological "Reading" Lesson: Classification of MNIST using TDAcited by 21
- 2022RipsNet: a general architecture for fast and robust estimation of the persistent homology of point cloudscited by 20
- 2018Functional Summaries of Persistence Diagramscited by 19
- 2014A persistence landscapes toolbox for topological statisticscited by 16
- 2018DTM-based Filtrationscited by 16
- 2020Triangle-Net: Towards Robustness in Point Cloud Learningcited by 13
- 2021Learning Rotation-Invariant Representations of Point Clouds Using Aligned Edge Convolutional Neural Networkscited by 12
- 2017Persistent homology machine learning for fingerprint classificationcited by 11
- 2019GeoNet: Deep Geodesic Networks for Point Cloud Analysiscited by 11
- 2020Can neural networks learn persistent homology features?cited by 11
- 2022GraphWalks: Efficient Shape Agnostic Geodesic Shortest Path Estimationcited by 8
- 2013On the Bootstrap for Persistence Diagrams and Landscapescited by 7
- 2017Persistence Diagrams with Linear Machine Learning Modelscited by 7
- 2019Harnessing the power of Topological Data Analysis to detect change points in time seriescited by 5
- 2019Homotopy Reconstruction via the Cech Complex and the Vietoris-Rips Complexcited by 4
- 2021Topology Applied to Machine Learning: From Global to Localcited by 4
- 2013A fast and robust algorithm to count topologically persistent holes in noisy cloudscited by 1
- 2019Efficient Algorithms to Test Digital Convexitycited by 1
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Citing papers per year: 2022: 2; 2023: 7; 2024: 3; 2025: 3; 2026: 5.
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- 2023On the Expressivity of Persistent Homology in Graph Learningcited by 19
- 2023Metric Space Magnitude for Evaluating the Diversity of Latent Representationscited by 17
- 2022Topological Singularity Detection at Multiple Scalescited by 11
- 2023TOPFORMER: Topology-Aware Authorship Attribution of Deepfake Texts with Diverse Writing Stylescited by 10
- 2025Enhancing Graph Representation Learning with Localized Topological Featurescited by 6
- 2023Singular value decomposition based matrix surgerycited by 3
- 2023Persistent Homology for High-dimensional Data Based on Spectral Methodscited by 3
- 2025Time-Series Forecasting via Topological Information Supervised Framework with Efficient Topological Feature Learningcited by 3
- 2022Do Neural Networks Trained with Topological Features Learn Different Internal Representations?cited by 2
- 2023Can Persistent Homology provide an efficient alternative for Evaluation of Knowledge Graph Completion Methods?cited by 1
- 2025A Quotient Homology Theory of Representation in Neural Networkscited by 1
- 2026TopoPrune: Robust Data Pruning via Unified Latent Space Topologycited by 1
8 more
- 2026A Persistent Homology Design Space for 3D Point Cloud Deep Learningcited by 1
- 2026Certified Topological Interaction in Neural Representations: Exact Tests and the Statistic They Requirecited by 1
- 2023Topological Inductive Bias fosters Multiple Instance Learning in Data-Scarce Scenarioscited by 0
- 2024Neural Persistence Dynamicscited by 0
- 2024Persistent Homology via Ellipsoidscited by 0
- 2024Hybridization of Persistent Homology with Neural Networks for Time-Series Prediction: A Case Study in Wave Heightcited by 0
- 2026Measuring Dataset Diversity from a Geometric Perspectivecited by 0
- 2026Signed Graph Pre-Training and Prompt Learningcited by 0
- 2026Signed Graph Pre-Training and Prompt Learning22 Sep 2026
- 2026Certified Topological Interaction in Neural Representations: Exact Tests and the Statistic They Require8 Sep 2026
- 2026A Persistent Homology Design Space for 3D Point Cloud Deep Learning5 Apr 2026
- 2026Measuring Dataset Diversity from a Geometric Perspective10 Feb 2026
- 2026TopoPrune: Robust Data Pruning via Unified Latent Space Topology2 Feb 2026
- 2025Time-Series Forecasting via Topological Information Supervised Framework with Efficient Topological Feature Learning31 Mar 2025
- 2025A Quotient Homology Theory of Representation in Neural Networks3 Feb 2025
- 2025Enhancing Graph Representation Learning with Localized Topological Features15 Jan 2025
- 2024Hybridization of Persistent Homology with Neural Networks for Time-Series Prediction: A Case Study in Wave Height3 Sep 2024
- 2024Persistent Homology via Ellipsoids21 Aug 2024
- 2024Neural Persistence Dynamics24 May 2024
- 2023Metric Space Magnitude for Evaluating the Diversity of Latent Representations27 Nov 2023
8 more
- 2023Persistent Homology for High-dimensional Data Based on Spectral Methods6 Nov 2023
- 2023TOPFORMER: Topology-Aware Authorship Attribution of Deepfake Texts with Diverse Writing Styles22 Sep 2023
- 2023Topological Inductive Bias fosters Multiple Instance Learning in Data-Scarce Scenarios26 Jul 2023
- 2023Singular value decomposition based matrix surgery22 Feb 2023
- 2023On the Expressivity of Persistent Homology in Graph Learning20 Feb 2023
- 2023Can Persistent Homology provide an efficient alternative for Evaluation of Knowledge Graph Completion Methods?30 Jan 2023
- 2022Do Neural Networks Trained with Topological Features Learn Different Internal Representations?14 Nov 2022
- 2022Topological Singularity Detection at Multiple Scales30 Sep 2022
- 2023On the Expressivity of Persistent Homology in Graph Learningcited by 19
- 2023Metric Space Magnitude for Evaluating the Diversity of Latent Representationscited by 17
- 2022Topological Singularity Detection at Multiple Scalescited by 11
- 2023TOPFORMER: Topology-Aware Authorship Attribution of Deepfake Texts with Diverse Writing Stylescited by 10
- 2025Enhancing Graph Representation Learning with Localized Topological Featurescited by 6
- 2023Singular value decomposition based matrix surgerycited by 3
- 2023Persistent Homology for High-dimensional Data Based on Spectral Methodscited by 3
- 2025Time-Series Forecasting via Topological Information Supervised Framework with Efficient Topological Feature Learningcited by 3
- 2022Do Neural Networks Trained with Topological Features Learn Different Internal Representations?cited by 2
- 2023Can Persistent Homology provide an efficient alternative for Evaluation of Knowledge Graph Completion Methods?cited by 1
- 2025A Quotient Homology Theory of Representation in Neural Networkscited by 1
- 2026TopoPrune: Robust Data Pruning via Unified Latent Space Topologycited by 1
12 most cited of 20 All 20 (JSON)
- 2026Signed Graph Pre-Training and Prompt Learning22 Sep 2026
- 2026Certified Topological Interaction in Neural Representations: Exact Tests and the Statistic They Require8 Sep 2026
- 2026A Persistent Homology Design Space for 3D Point Cloud Deep Learning5 Apr 2026
- 2026Measuring Dataset Diversity from a Geometric Perspective10 Feb 2026
- 2026TopoPrune: Robust Data Pruning via Unified Latent Space Topology2 Feb 2026
- 2025Time-Series Forecasting via Topological Information Supervised Framework with Efficient Topological Feature Learning31 Mar 2025
- 2025A Quotient Homology Theory of Representation in Neural Networks3 Feb 2025
- 2025Enhancing Graph Representation Learning with Localized Topological Features15 Jan 2025
- 2024Hybridization of Persistent Homology with Neural Networks for Time-Series Prediction: A Case Study in Wave Height3 Sep 2024
- 2024Persistent Homology via Ellipsoids21 Aug 2024
- 2024Neural Persistence Dynamics24 May 2024
- 2023Metric Space Magnitude for Evaluating the Diversity of Latent Representations27 Nov 2023
12 newest of 20 All 20 (JSON)