Topology of deep neural networks
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Abstract (arXiv)
We study how the topology of a data set M = Ma cup Mb subseteq ℝd, representing two classes a and b in a binary classification problem, changes as it passes through the layers of a well-trained neural network, i.e., with perfect accuracy on training set and near-zero generalization error (≈ 0.01%). The goal is to shed light on two mysteries in deep neural networks: (i) a nonsmooth activation function like ReLU outperforms a smooth one like hyperbolic tangent; (ii) successful neural network architectures rely on having many layers, even though a shallow network can approximate any function arbitrary well. We performed extensive experiments on the persistent homology of a wide range of point cloud data sets, both real and simulated. The results consistently demonstrate the following: (1) Neural networks operate by changing topology, transforming a topologically complicated data set into a topologically simple one as it passes through the layers. No matter how complicated the topology of M we begin with, when passed through a well-trained neural network f : ℝd → ℝp, there is a vast reduction in the Betti numbers of both components Ma and Mb; in fact they nearly always reduce to their lowest possible values: βkbigl(f(Mi)bigr) = 0 for k ≥ 1 and β0bigl(f(Mi)bigr) = 1, i =a, b. Furthermore, (2) the reduction in Betti numbers is significantly faster for ReLU activation than hyperbolic tangent activation as the former defines nonhomeomorphic maps that change topology, whereas the latter defines homeomorphic maps that preserve topology. Lastly, (3) shallow and deep networks transform data sets differently -- a shallow network operates mainly through changing geometry and changes topology only in its final layers, a deep one spreads topological changes more evenly across all layers.
Key facts. Cited by 111 papers in the map (data through 7 Oct 2026). First posted on arXiv 13 Apr 2020.
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Citing papers per year: 2021: 18; 2022: 19; 2023: 18; 2024: 18; 2025: 18; 2026: 20.
111 papers.
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- 2024Position: Topological Deep Learning is the New Frontier for Relational Learningcited by 65
- 2021Understanding Softmax Confidence and Uncertaintycited by 62
- 2022Neural Collapse with Normalized Features: A Geometric Analysis over the Riemannian Manifoldcited by 50
- 2021Artificial Text Detection via Examining the Topology of Attention Mapscited by 49
- 2021Topological Detection of Trojaned Neural Networkscited by 34
- 2023Topological Deep Learning: A Review of an Emerging Paradigmcited by 34
- 2021A Review on Deep Learning in UAV Remote Sensingcited by 32
- 2025What are you sinking? A geometric approach on attention sinkcited by 26
- 2022RipsNet: a general architecture for fast and robust estimation of the persistent homology of point cloudscited by 20
- 2022On the effectiveness of persistent homologycited by 20
- 2021Persformer: A Transformer Architecture for Topological Machine Learningcited by 19
- 2021Activation Landscapes as a Topological Summary of Neural Network Performancecited by 17
38 more
- 2021SPADE: A Spectral Method for Black-Box Adversarial Robustness Evaluationcited by 16
- 2026Learning Global Hypothesis Space for Enhancing Synergistic Reasoning Chaincited by 15
- 2022Topology and geometry of data manifold in deep learningcited by 12
- 2024Persistent Topological Features in Large Language Modelscited by 11
- 2024Beyond Scalars: Concept-Based Alignment Analysis in Vision Transformerscited by 11
- 2022Topological Data Analysis for Speech Processingcited by 9
- 2023Topological Expressivity of ReLU Neural Networkscited by 9
- 2021Cycle Registration in Persistent Homology with Applications in Topological Bootstrapcited by 8
- 2021Characterizing and Measuring the Similarity of Neural Networks with Persistent Homologycited by 8
- 2021Quantitative Performance Assessment of CNN Units via Topological Entropy Calculationcited by 6
- 2022Reachable Polyhedral Marching (RPM): An Exact Analysis Tool for Deep-Learned Control Systemscited by 6
- 2021Topological Deep Learning: Classification Neural Networkscited by 5
- 2022Transformers with Learnable Activation Functionscited by 5
- 2022FONDUE: an algorithm to find the optimal dimensionality of the latent representations of variational autoencoderscited by 5
- 2022Safety Verification for Neural Networks Based on Set-boundary Analysiscited by 5
- 2023Deep neural networks architectures from the perspective of manifold learningcited by 5
- 2023On Characterizing the Evolution of Embedding Space of Neural Networks using Algebraic Topologycited by 5
- 2024Optimal Equivariant Architectures from the Symmetries of Matrix-Element Likelihoodscited by 5
- 2025The Resurrection of the ReLUcited by 5
- 2021Topology Applied to Machine Learning: From Global to Localcited by 4
- 2022Topological data analysis on noisy quantum computerscited by 4
- 2023The Geometric Structure of Fully-Connected ReLU Layerscited by 4
- 2024Deep Learning as Ricci Flowcited by 4
- 2025The Shape of Adversarial Influence: Characterizing LLM Latent Spaces with Persistent Homologycited by 4
- 2022Internal Representations of Vision Models Through the Lens of Frames on Data Manifoldscited by 3
- 2023Persistent Homology for High-dimensional Data Based on Spectral Methodscited by 3
- 2025Marching Neurons: Accurate Surface Extraction for Neural Implicit Shapescited by 3
- 2021On the space of coefficients of a Feed Forward Neural Networkcited by 2
- 2021Toward Understanding Convolutional Neural Networks from Volterra Convolution Perspectivecited by 2
- 2022Functional Network: A Novel Framework for Interpretability of Deep Neural Networkscited by 2
- 2023Topological Interpretations of GPT-3cited by 2
- 2024Defining Neural Network Architecture through Polytope Structures of Datasetcited by 2
- 2024Mixup Barcodes: Quantifying Geometric-Topological Interactions between Point Cloudscited by 2
- 2024A Theoretical Study of Neural Network Expressive Power via Manifold Topologycited by 2
- 2025Topological Signatures of ReLU Neural Network Activation Patternscited by 2
- 2025Minimum Width of Deep Narrow Networks for Universal Approximationcited by 2
- 2026The Defense Trilemma: Why Prompt Injection Defense Wrappers Fail?cited by 2
- 2021Joint Geometric and Topological Analysis of Hierarchical Datasetscited by 1
50 most cited of 111 All 111 (JSON)
- 2026Certified Topological Interaction in Neural Representations: Exact Tests and the Statistic They Require8 Sep 2026
- 2026Measuring Memory and Generalization as Separable Geometric Channels: The Topo^2 Framework31 Aug 2026
- 2026Topological Simplification in Predictive Coding Networks3 Aug 2026
- 2026How fine a change can moments see? A scale law for detecting distribution shift, with a kernel calibration rule2 Aug 2026
- 2026Topological Signatures of Context-Level Reliability in TabPFN20 Jul 2026
- 2026Low-dimensional topology of deep neural networks30 Jun 2026
- 2026Tracking Representation Dynamics in Large Language Models with Persistent Homology17 Jun 2026
- 2026Deciphering Two Training Clocks in Grokking via Deep Linear Network Theory with Conditional ReLU Reduction4 Jun 2026
- 2026Learning Transfers: Kan Extensions for Neural Invariants30 May 2026
- 2026The Shape of Addition: Geometric Structures of Arithmetic in Large Language Models29 May 2026
- 2026Encoding Robust Topological Signatures for Hyperdimensional Computing16 May 2026
- 2026HodgeCover: Higher-Order Topological Coverage Drives Compression of Sparse Mixture-of-Experts13 May 2026
38 more
- 2026Diffusion Operator Geometry of Feedforward Representations1 May 2026
- 2026The Geometric Canary: Predicting Steerability and Detecting Drift via Representational Stability20 Apr 2026
- 2026The Defense Trilemma: Why Prompt Injection Defense Wrappers Fail?7 Apr 2026
- 2026From Reachability to Learnability: Geometric Design Principles for Quantum Neural Networks3 Mar 2026
- 2026On the Topology of Neural Network Superlevel Sets3 Mar 2026
- 2026Learning Global Hypothesis Space for Enhancing Synergistic Reasoning Chain10 Feb 2026
- 2026TopoPrune: Robust Data Pruning via Unified Latent Space Topology2 Feb 2026
- 2026Systematic Characterization of Minimal Deep Learning Architectures: A Unified Analysis of Convergence, Pruning, and Quantization25 Jan 2026
- 2025Visual Language Hypothesis29 Dec 2025
- 2025Uncertainty of Network Topology with Applications to Out-of-Distribution Detection24 Nov 2025
- 2025Minimum Width of Deep Narrow Networks for Universal Approximation10 Nov 2025
- 2025Topological Signatures of ReLU Neural Network Activation Patterns14 Oct 2025
- 2025Topological Invariance and Breakdown in Learning3 Oct 2025
- 2025Neural Feature Geometry Evolves as Discrete Ricci Flow26 Sep 2025
- 2025Marching Neurons: Accurate Surface Extraction for Neural Implicit Shapes25 Sep 2025
- 2025Topology Structure Optimization of Reservoirs Using GLMY Homology15 Sep 2025
- 2025Time Series Analysis of Spiking Neural Systems via Transfer Entropy and Directed Persistent Homology26 Aug 2025
- 2025What are you sinking? A geometric approach on attention sink4 Aug 2025
- 2025Topology-Aware Activation Functions in Neural Networks17 Jul 2025
- 2025Latent Space Topology Evolution in Multilayer Perceptrons2 Jun 2025
- 2025The Resurrection of the ReLU28 May 2025
- 2025The Shape of Adversarial Influence: Characterizing LLM Latent Spaces with Persistent Homology26 May 2025
- 2025Koopman Autoencoders Learn Neural Representation Dynamics19 May 2025
- 2025A Quotient Homology Theory of Representation in Neural Networks3 Feb 2025
- 2025Topology of Out-of-Distribution Examples in Deep Neural Networks21 Jan 2025
- 2025A Metric Topology of Deep Learning for Data Classification20 Jan 2025
- 2024Functional connectomes of neural networks18 Dec 2024
- 2024Beyond Scalars: Concept-Based Alignment Analysis in Vision Transformers9 Dec 2024
- 2024Optimal Equivariant Architectures from the Symmetries of Matrix-Element Likelihoods24 Oct 2024
- 2024Is Smoothness the Key to Robustness? A Comparison of Attention and Convolution Models Using a Novel Metric23 Oct 2024
- 2024A Theoretical Study of Neural Network Expressive Power via Manifold Topology21 Oct 2024
- 2024Persistent Topological Features in Large Language Models14 Oct 2024
- 2024Investigating the Impact of Hard Samples on Accuracy Reveals In-class Data Imbalance22 Sep 2024
- 2024On Learnable Parameters of Optimal and Suboptimal Deep Learning Models21 Aug 2024
- 2024Characterization of topological structures in different neural network architectures8 Jul 2024
- 2024Semiring Activation in Neural Networks29 May 2024
- 2024A rank decomposition for the topological classification of neural representations30 Apr 2024
- 2024Deep Learning as Ricci Flow22 Apr 2024
50 newest of 111 All 111 (JSON)
- 2024Position: Topological Deep Learning is the New Frontier for Relational Learningcited by 65
- 2021Understanding Softmax Confidence and Uncertaintycited by 62
- 2022Neural Collapse with Normalized Features: A Geometric Analysis over the Riemannian Manifoldcited by 50
- 2021Artificial Text Detection via Examining the Topology of Attention Mapscited by 49
- 2021Topological Detection of Trojaned Neural Networkscited by 34
- 2023Topological Deep Learning: A Review of an Emerging Paradigmcited by 34
- 2021A Review on Deep Learning in UAV Remote Sensingcited by 32
- 2025What are you sinking? A geometric approach on attention sinkcited by 26
- 2022RipsNet: a general architecture for fast and robust estimation of the persistent homology of point cloudscited by 20
- 2022On the effectiveness of persistent homologycited by 20
- 2021Persformer: A Transformer Architecture for Topological Machine Learningcited by 19
- 2021Activation Landscapes as a Topological Summary of Neural Network Performancecited by 17
12 most cited of 107 All 107 (JSON)
- 2026Certified Topological Interaction in Neural Representations: Exact Tests and the Statistic They Require8 Sep 2026
- 2026Measuring Memory and Generalization as Separable Geometric Channels: The Topo^2 Framework31 Aug 2026
- 2026Topological Simplification in Predictive Coding Networks3 Aug 2026
- 2026How fine a change can moments see? A scale law for detecting distribution shift, with a kernel calibration rule2 Aug 2026
- 2026Topological Signatures of Context-Level Reliability in TabPFN20 Jul 2026
- 2026Low-dimensional topology of deep neural networks30 Jun 2026
- 2026Tracking Representation Dynamics in Large Language Models with Persistent Homology17 Jun 2026
- 2026Deciphering Two Training Clocks in Grokking via Deep Linear Network Theory with Conditional ReLU Reduction4 Jun 2026
- 2026Learning Transfers: Kan Extensions for Neural Invariants30 May 2026
- 2026The Shape of Addition: Geometric Structures of Arithmetic in Large Language Models29 May 2026
- 2026Encoding Robust Topological Signatures for Hyperdimensional Computing16 May 2026
- 2026Diffusion Operator Geometry of Feedforward Representations1 May 2026
12 newest of 107 All 107 (JSON)