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Topology of deep neural networks

arXiv 2004.06093 ↗First posted 13 Apr 2020cs.LG math.AT stat.MLcited by 111

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Abstract (arXiv)

We study how the topology of a data set M = Ma cup Mb subseteq ℝd, representing two classes a and b in a binary classification problem, changes as it passes through the layers of a well-trained neural network, i.e., with perfect accuracy on training set and near-zero generalization error (≈ 0.01%). The goal is to shed light on two mysteries in deep neural networks: (i) a nonsmooth activation function like ReLU outperforms a smooth one like hyperbolic tangent; (ii) successful neural network architectures rely on having many layers, even though a shallow network can approximate any function arbitrary well. We performed extensive experiments on the persistent homology of a wide range of point cloud data sets, both real and simulated. The results consistently demonstrate the following: (1) Neural networks operate by changing topology, transforming a topologically complicated data set into a topologically simple one as it passes through the layers. No matter how complicated the topology of M we begin with, when passed through a well-trained neural network f : ℝd → ℝp, there is a vast reduction in the Betti numbers of both components Ma and Mb; in fact they nearly always reduce to their lowest possible values: βkbigl(f(Mi)bigr) = 0 for k ≥ 1 and β0bigl(f(Mi)bigr) = 1, i =a, b. Furthermore, (2) the reduction in Betti numbers is significantly faster for ReLU activation than hyperbolic tangent activation as the former defines nonhomeomorphic maps that change topology, whereas the latter defines homeomorphic maps that preserve topology. Lastly, (3) shallow and deep networks transform data sets differently -- a shallow network operates mainly through changing geometry and changes topology only in its final layers, a deep one spreads topological changes more evenly across all layers.

Key facts. Cited by 111 papers in the map (data through 7 Oct 2026). First posted on arXiv 13 Apr 2020.

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Citing papers per year: 2021: 18; 2022: 19; 2023: 18; 2024: 18; 2025: 18; 2026: 20.

111 papers.

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  1. 2024Position: Topological Deep Learning is the New Frontier for Relational Learningcited by 65
  2. 2021Understanding Softmax Confidence and Uncertaintycited by 62
  3. 2022Neural Collapse with Normalized Features: A Geometric Analysis over the Riemannian Manifoldcited by 50
  4. 2021Artificial Text Detection via Examining the Topology of Attention Mapscited by 49
  5. 2021Topological Detection of Trojaned Neural Networkscited by 34
  6. 2023Topological Deep Learning: A Review of an Emerging Paradigmcited by 34
  7. 2021A Review on Deep Learning in UAV Remote Sensingcited by 32
  8. 2025What are you sinking? A geometric approach on attention sinkcited by 26
  9. 2022RipsNet: a general architecture for fast and robust estimation of the persistent homology of point cloudscited by 20
  10. 2022On the effectiveness of persistent homologycited by 20
  11. 2021Persformer: A Transformer Architecture for Topological Machine Learningcited by 19
  12. 2021Activation Landscapes as a Topological Summary of Neural Network Performancecited by 17
38 more
  1. 2021SPADE: A Spectral Method for Black-Box Adversarial Robustness Evaluationcited by 16
  2. 2026Learning Global Hypothesis Space for Enhancing Synergistic Reasoning Chaincited by 15
  3. 2022Topology and geometry of data manifold in deep learningcited by 12
  4. 2024Persistent Topological Features in Large Language Modelscited by 11
  5. 2024Beyond Scalars: Concept-Based Alignment Analysis in Vision Transformerscited by 11
  6. 2022Topological Data Analysis for Speech Processingcited by 9
  7. 2023Topological Expressivity of ReLU Neural Networkscited by 9
  8. 2021Cycle Registration in Persistent Homology with Applications in Topological Bootstrapcited by 8
  9. 2021Characterizing and Measuring the Similarity of Neural Networks with Persistent Homologycited by 8
  10. 2021Quantitative Performance Assessment of CNN Units via Topological Entropy Calculationcited by 6
  11. 2022Reachable Polyhedral Marching (RPM): An Exact Analysis Tool for Deep-Learned Control Systemscited by 6
  12. 2021Topological Deep Learning: Classification Neural Networkscited by 5
  13. 2022Transformers with Learnable Activation Functionscited by 5
  14. 2022FONDUE: an algorithm to find the optimal dimensionality of the latent representations of variational autoencoderscited by 5
  15. 2022Safety Verification for Neural Networks Based on Set-boundary Analysiscited by 5
  16. 2023Deep neural networks architectures from the perspective of manifold learningcited by 5
  17. 2023On Characterizing the Evolution of Embedding Space of Neural Networks using Algebraic Topologycited by 5
  18. 2024Optimal Equivariant Architectures from the Symmetries of Matrix-Element Likelihoodscited by 5
  19. 2025The Resurrection of the ReLUcited by 5
  20. 2021Topology Applied to Machine Learning: From Global to Localcited by 4
  21. 2022Topological data analysis on noisy quantum computerscited by 4
  22. 2023The Geometric Structure of Fully-Connected ReLU Layerscited by 4
  23. 2024Deep Learning as Ricci Flowcited by 4
  24. 2025The Shape of Adversarial Influence: Characterizing LLM Latent Spaces with Persistent Homologycited by 4
  25. 2022Internal Representations of Vision Models Through the Lens of Frames on Data Manifoldscited by 3
  26. 2023Persistent Homology for High-dimensional Data Based on Spectral Methodscited by 3
  27. 2025Marching Neurons: Accurate Surface Extraction for Neural Implicit Shapescited by 3
  28. 2021On the space of coefficients of a Feed Forward Neural Networkcited by 2
  29. 2021Toward Understanding Convolutional Neural Networks from Volterra Convolution Perspectivecited by 2
  30. 2022Functional Network: A Novel Framework for Interpretability of Deep Neural Networkscited by 2
  31. 2023Topological Interpretations of GPT-3cited by 2
  32. 2024Defining Neural Network Architecture through Polytope Structures of Datasetcited by 2
  33. 2024Mixup Barcodes: Quantifying Geometric-Topological Interactions between Point Cloudscited by 2
  34. 2024A Theoretical Study of Neural Network Expressive Power via Manifold Topologycited by 2
  35. 2025Topological Signatures of ReLU Neural Network Activation Patternscited by 2
  36. 2025Minimum Width of Deep Narrow Networks for Universal Approximationcited by 2
  37. 2026The Defense Trilemma: Why Prompt Injection Defense Wrappers Fail?cited by 2
  38. 2021Joint Geometric and Topological Analysis of Hierarchical Datasetscited by 1

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