In-BoXBART: Get Instructions into Biomedical Multi-Task Learning
Not on the map. Why?
Abstract (arXiv)
Single-task models have proven pivotal in solving specific tasks; however, they have limitations in real-world applications where multi-tasking is necessary and domain shifts are exhibited. Recently, instructional prompts have shown significant improvement towards multi-task generalization; however, the effect of instructional prompts and Multi-Task Learning (MTL) has not been systematically studied in the biomedical domain. Motivated by this, this paper explores the impact of instructional prompts for biomedical MTL. We introduce the BoX, a collection of 32 instruction tasks for Biomedical NLP across (X) various categories. Using this meta-dataset, we propose a unified model termed In-BoXBART, that can jointly learn all tasks of the BoX without any task-specific modules. To the best of our knowledge, this is the first attempt to propose a unified model in the biomedical domain and use instructions to achieve generalization across several biomedical tasks. Experimental results indicate that the proposed model: 1) outperforms the single-task baseline by ~3% and multi-task (without instruction) baseline by ~18% on an average, and 2) shows ~23% improvement compared to the single-task baseline in few-shot learning (i.e., 32 instances per task) on an average. Our analysis indicates that there is significant room for improvement across tasks in the BoX, implying the scope for future research direction.
Key facts. Cited by 16 papers in the map (data through 7 Oct 2026). Builds on 46 of its 67 references that are in the map. First posted on arXiv 15 Apr 2022.
Builds on
46 of 67 references.
References · 46
- 2022Training language models to follow instructions with human feedbackcited by 15,712
- 2019Exploring the Limits of Transfer Learning with a Unified Text-to-Text Transformercited by 14,491
- 2019BART: Denoising Sequence-to-Sequence Pre-training for Natural Language Generation, Translation, and Comprehensioncited by 5,874
- 2021Finetuned Language Models Are Zero-Shot Learnerscited by 3,747
- 2020Longformer: The Long-Document Transformercited by 3,362
- 2021Pre-train, Prompt, and Predict: A Systematic Survey of Prompting Methods in Natural Language Processingcited by 2,222
- 2019HuggingFace's Transformers: State-of-the-art Natural Language Processingcited by 2,201
- 2019BioBERT: a pre-trained biomedical language representation model for biomedical text miningcited by 1,935
- 2021Multitask Prompted Training Enables Zero-Shot Task Generalizationcited by 1,462
- 2022Rethinking the Role of Demonstrations: What Makes In-Context Learning Work?cited by 1,413
- 2019PubMedQA: A Dataset for Biomedical Research Question Answeringcited by 1,271
- 2019Energy and Policy Considerations for Deep Learning in NLPcited by 1,242
34 more
- 2021Fantastically Ordered Prompts and Where to Find Them: Overcoming Few-Shot Prompt Order Sensitivitycited by 1,122
- 2021Cross-Task Generalization via Natural Language Crowdsourcing Instructionscited by 696
- 2020It's Not Just Size That Matters: Small Language Models Are Also Few-Shot Learnerscited by 668
- 2019Green AIcited by 620
- 2020UnifiedQA: Crossing Format Boundaries With a Single QA Systemcited by 475
- 2021MetaICL: Learning to Learn In Contextcited by 450
- 2021Do Prompt-Based Models Really Understand the Meaning of their Prompts?cited by 324
- 2019Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking Datasetscited by 298
- 2021AI Chains: Transparent and Controllable Human-AI Interaction by Chaining Large Language Model Promptscited by 265
- 2018The Natural Language Decathlon: Multitask Learning as Question Answeringcited by 235
- 2022UnifiedSKG: Unifying and Multi-Tasking Structured Knowledge Grounding with Text-to-Text Language Modelscited by 231
- 2021Muppet: Massive Multi-task Representations with Pre-Finetuningcited by 192
- 2021Reframing Instructional Prompts to GPTk's Languagecited by 176
- 2022PromptChainer: Chaining Large Language Model Prompts through Visual Programmingcited by 134
- 2021Adapting Language Models for Zero-shot Learning by Meta-tuning on Dataset and Prompt Collectionscited by 128
- 2022GrIPS: Gradient-free, Edit-based Instruction Search for Prompting Large Language Modelscited by 127
- 2021Entailment as Few-Shot Learnercited by 122
- 2022NumGLUE: A Suite of Fundamental yet Challenging Mathematical Reasoning Taskscited by 110
- 2021SciFive: a text-to-text transformer model for biomedical literaturecited by 99
- 2021UNICORN on RAINBOW: A Universal Commonsense Reasoning Model on a New Multitask Benchmarkcited by 98
- 2021Pre-trained Language Models in Biomedical Domain: A Systematic Surveycited by 87
- 2020The Turking Test: Can Language Models Understand Instructions?cited by 82
- 2020Learning from Task Descriptionscited by 78
- 2021When Can Models Learn From Explanations? A Formal Framework for Understanding the Roles of Explanation Datacited by 75
- 2021Ethical-Advice Taker: Do Language Models Understand Natural Language Interventions?cited by 46
- 2022InstructionNER: A Multi-Task Instruction-Based Generative Framework for Few-shot NERcited by 31
- 2019Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilationcited by 30
- 2021Learning to Generate Task-Specific Adapters from Task Descriptioncited by 28
- 2021MedGPT: Medical Concept Prediction from Clinical Narrativescited by 24
- 2022Improving Biomedical Information Retrieval with Neural Retrieverscited by 20
- 2022Less is More: Summary of Long Instructions is Better for Program Synthesiscited by 17
- 2022How Many Data Samples is an Additional Instruction Worth?cited by 16
- 2022Choose Your QA Model Wisely: A Systematic Study of Generative and Extractive Readers for Question Answeringcited by 11
- 2020Towards Question Format Independent Numerical Reasoning: A Set of Prerequisite Taskscited by 10
Built on by
Citing papers per year: 2022: 3; 2023: 8; 2024: 5.
16 papers.
Sort:
By area:
- 2022Learn to Explain: Multimodal Reasoning via Thought Chains for Science Question Answeringcited by 1,881
- 2023GIMLET: A Unified Graph-Text Model for Instruction-Based Molecule Zero-Shot Learningcited by 70
- 2024SciRIFF: A Resource to Enhance Language Model Instruction-Following over Scientific Literaturecited by 37
- 2023Towards LogiGLUE: A Brief Survey and A Benchmark for Analyzing Logical Reasoning Capabilities of Language Modelscited by 35
- 2023Instruction Tuned Models are Quick Learnerscited by 21
- 2024Large Language Model Benchmarks in Medical Taskscited by 16
- 2022BioTABQA: Instruction Learning for Biomedical Table Question Answeringcited by 13
- 2024Assessing Empathy in Large Language Models with Real-World Physician-Patient Interactionscited by 13
- 2022PUnifiedNER: A Prompting-based Unified NER System for Diverse Datasetscited by 10
- 2023MDDial: A Multi-turn Differential Diagnosis Dialogue Dataset with Reliability Evaluationcited by 10
- 2023CoPL: Contextual Prompt Learning for Vision-Language Understandingcited by 9
- 2023CSMeD: Bridging the Dataset Gap in Automated Citation Screening for Systematic Literature Reviewscited by 2
4 more
- 2023Challenges and Opportunities of Using Transformer-Based Multi-Task Learning in NLP Through ML Lifecycle: A Surveycited by 1
- 2024Domain-Specific Improvement on Psychotherapy Chatbot Using Assistantcited by 1
- 2024GPT-3 Powered Information Extraction for Building Robust Knowledge Basescited by 1
- 2023Real-Time Visual Feedback to Guide Benchmark Creation: A Human-and-Metric-in-the-Loop Workflowcited by 0
- 2024Large Language Model Benchmarks in Medical Tasks28 Oct 2024
- 2024GPT-3 Powered Information Extraction for Building Robust Knowledge Bases31 Jul 2024
- 2024SciRIFF: A Resource to Enhance Language Model Instruction-Following over Scientific Literature10 Jun 2024
- 2024Assessing Empathy in Large Language Models with Real-World Physician-Patient Interactions26 May 2024
- 2024Domain-Specific Improvement on Psychotherapy Chatbot Using Assistant24 Apr 2024
- 2023CSMeD: Bridging the Dataset Gap in Automated Citation Screening for Systematic Literature Reviews21 Nov 2023
- 2023Towards LogiGLUE: A Brief Survey and A Benchmark for Analyzing Logical Reasoning Capabilities of Language Models2 Oct 2023
- 2023Challenges and Opportunities of Using Transformer-Based Multi-Task Learning in NLP Through ML Lifecycle: A Survey16 Aug 2023
- 2023MDDial: A Multi-turn Differential Diagnosis Dialogue Dataset with Reliability Evaluation16 Aug 2023
- 2023CoPL: Contextual Prompt Learning for Vision-Language Understanding3 Jul 2023
- 2023GIMLET: A Unified Graph-Text Model for Instruction-Based Molecule Zero-Shot Learning28 May 2023
- 2023Instruction Tuned Models are Quick Learners17 May 2023
4 more
- 2023Real-Time Visual Feedback to Guide Benchmark Creation: A Human-and-Metric-in-the-Loop Workflow9 Feb 2023
- 2022PUnifiedNER: A Prompting-based Unified NER System for Diverse Datasets27 Nov 2022
- 2022Learn to Explain: Multimodal Reasoning via Thought Chains for Science Question Answering20 Sep 2022
- 2022BioTABQA: Instruction Learning for Biomedical Table Question Answering6 Jul 2022
- 2023GIMLET: A Unified Graph-Text Model for Instruction-Based Molecule Zero-Shot Learningcited by 70
- 2024SciRIFF: A Resource to Enhance Language Model Instruction-Following over Scientific Literaturecited by 37
- 2023Instruction Tuned Models are Quick Learnerscited by 21
- 2024Large Language Model Benchmarks in Medical Taskscited by 16
- 2022BioTABQA: Instruction Learning for Biomedical Table Question Answeringcited by 13
- 2024Assessing Empathy in Large Language Models with Real-World Physician-Patient Interactionscited by 13
- 2022PUnifiedNER: A Prompting-based Unified NER System for Diverse Datasetscited by 10
- 2023MDDial: A Multi-turn Differential Diagnosis Dialogue Dataset with Reliability Evaluationcited by 10
- 2023CSMeD: Bridging the Dataset Gap in Automated Citation Screening for Systematic Literature Reviewscited by 2
- 2023Challenges and Opportunities of Using Transformer-Based Multi-Task Learning in NLP Through ML Lifecycle: A Surveycited by 1
- 2024Domain-Specific Improvement on Psychotherapy Chatbot Using Assistantcited by 1
- 2024GPT-3 Powered Information Extraction for Building Robust Knowledge Basescited by 1
12 most cited of 13 All 13 (JSON)
- 2024Large Language Model Benchmarks in Medical Tasks28 Oct 2024
- 2024GPT-3 Powered Information Extraction for Building Robust Knowledge Bases31 Jul 2024
- 2024SciRIFF: A Resource to Enhance Language Model Instruction-Following over Scientific Literature10 Jun 2024
- 2024Assessing Empathy in Large Language Models with Real-World Physician-Patient Interactions26 May 2024
- 2024Domain-Specific Improvement on Psychotherapy Chatbot Using Assistant24 Apr 2024
- 2023CSMeD: Bridging the Dataset Gap in Automated Citation Screening for Systematic Literature Reviews21 Nov 2023
- 2023Challenges and Opportunities of Using Transformer-Based Multi-Task Learning in NLP Through ML Lifecycle: A Survey16 Aug 2023
- 2023MDDial: A Multi-turn Differential Diagnosis Dialogue Dataset with Reliability Evaluation16 Aug 2023
- 2023GIMLET: A Unified Graph-Text Model for Instruction-Based Molecule Zero-Shot Learning28 May 2023
- 2023Instruction Tuned Models are Quick Learners17 May 2023
- 2023Real-Time Visual Feedback to Guide Benchmark Creation: A Human-and-Metric-in-the-Loop Workflow9 Feb 2023
- 2022PUnifiedNER: A Prompting-based Unified NER System for Diverse Datasets27 Nov 2022
12 newest of 13 All 13 (JSON)