Permutation-Invariant Variational Autoencoder for Graph-Level Representation Learning
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Abstract (arXiv)
Recently, there has been great success in applying deep neural networks on graph structured data. Most work, however, focuses on either node- or graph-level supervised learning, such as node, link or graph classification or node-level unsupervised learning (e.g. node clustering). Despite its wide range of possible applications, graph-level unsupervised learning has not received much attention yet. This might be mainly attributed to the high representation complexity of graphs, which can be represented by n! equivalent adjacency matrices, where n is the number of nodes. In this work we address this issue by proposing a permutation-invariant variational autoencoder for graph structured data. Our proposed model indirectly learns to match the node ordering of input and output graph, without imposing a particular node ordering or performing expensive graph matching. We demonstrate the effectiveness of our proposed model on various graph reconstruction and generation tasks and evaluate the expressive power of extracted representations for downstream graph-level classification and regression.
Key facts. Cited by 23 papers in the map (data through 7 Oct 2026). Builds on 37 of its 76 references that are in the map. First posted on arXiv 20 Apr 2021.
Builds on
37 of 76 references.
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Citing papers per year: 2021: 1; 2022: 2; 2023: 4; 2024: 5; 2025: 7; 2026: 4.
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- 2022Unsupervised Learning of Group Invariant and Equivariant Representationscited by 38
- 2023Learning Probabilistic Symmetrization for Architecture Agnostic Equivariancecited by 25
- 2023Improving Graph Generation by Restricting Graph Bandwidthcited by 15
- 2021Generating stable molecules using imitation and reinforcement learningcited by 9
- 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspectivecited by 9
- 2025The quest for the GRAph Level autoEncoder (GRALE)cited by 8
- 2022An efficient graph generative model for navigating ultra-large combinatorial synthesis librariescited by 5
- 2023Self-Supervised Detection of Perfect and Partial Input-Dependent Symmetriescited by 4
- 2024Signed Graph Autoencoder for Explainable and Polarization-Aware Network Embeddingscited by 4
- 2024Self-supervised Photographic Image Layout Representation Learningcited by 3
- 2025Generative Models for Crystalline Materialscited by 3
- 2024Interpreting Equivariant Representationscited by 2
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- 2025RECON: Robust symmetry discovery via Explicit Canonical Orientation Normalizationcited by 1
- 2025Decoding Cortical Microcircuits: A Generative Model for Latent Space Exploration and Controlled Synthesiscited by 1
- 2026Phishing the Phishers with SpecularNet: Hierarchical Graph Autoencoding for Reference-Free Web Phishing Detectioncited by 1
- 2026GraViti: Graph-Level Variational Autoencoders with Relaxed Permutation Invariancecited by 1
- 2023Isomorphic-Consistent Variational Graph Auto-Encoders for Multi-Level Graph Representation Learningcited by 0
- 2025Evolving Hard Maximum Cut Instances for Quantum Approximate Optimization Algorithmscited by 0
- 2025Exploring Semantic Clustering and Similarity Search for Heterogeneous Traffic Scenario Graphcited by 0
- 2026Building Deep Graph Predictors with Graph Imitation Learningcited by 0
- 2026GeoGAE: Scalable Graph-Level Autoencoding via Hyperball Cloud Representationscited by 0
- 2026GeoGAE: Scalable Graph-Level Autoencoding via Hyperball Cloud Representations28 Sep 2026
- 2026GraViti: Graph-Level Variational Autoencoders with Relaxed Permutation Invariance15 May 2026
- 2026Phishing the Phishers with SpecularNet: Hierarchical Graph Autoencoding for Reference-Free Web Phishing Detection2 Mar 2026
- 2026Building Deep Graph Predictors with Graph Imitation Learning21 Jan 2026
- 2025Generative Models for Crystalline Materials27 Nov 2025
- 2025Toward Real-World Table Agents: Capabilities, Workflows, and Design Principles for LLM-based Table Intelligence14 Jul 2025
- 2025Exploring Semantic Clustering and Similarity Search for Heterogeneous Traffic Scenario Graph7 Jul 2025
- 2025Decoding Cortical Microcircuits: A Generative Model for Latent Space Exploration and Controlled Synthesis29 May 2025
- 2025The quest for the GRAph Level autoEncoder (GRALE)28 May 2025
- 2025RECON: Robust symmetry discovery via Explicit Canonical Orientation Normalization19 May 2025
- 2025Evolving Hard Maximum Cut Instances for Quantum Approximate Optimization Algorithms30 Jan 2025
- 2024Whole-Graph Representation Learning For the Classification of Signed Networks30 Sep 2024
11 more
- 2024Signed Graph Autoencoder for Explainable and Polarization-Aware Network Embeddings16 Sep 2024
- 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspective24 Mar 2024
- 2024Self-supervised Photographic Image Layout Representation Learning6 Mar 2024
- 2024Interpreting Equivariant Representations23 Jan 2024
- 2023Self-Supervised Detection of Perfect and Partial Input-Dependent Symmetries19 Dec 2023
- 2023Isomorphic-Consistent Variational Graph Auto-Encoders for Multi-Level Graph Representation Learning9 Dec 2023
- 2023Learning Probabilistic Symmetrization for Architecture Agnostic Equivariance5 Jun 2023
- 2023Improving Graph Generation by Restricting Graph Bandwidth25 Jan 2023
- 2022An efficient graph generative model for navigating ultra-large combinatorial synthesis libraries19 Oct 2022
- 2022Unsupervised Learning of Group Invariant and Equivariant Representations15 Feb 2022
- 2021Generating stable molecules using imitation and reinforcement learning11 Jul 2021
- 2022Unsupervised Learning of Group Invariant and Equivariant Representationscited by 38
- 2023Learning Probabilistic Symmetrization for Architecture Agnostic Equivariancecited by 25
- 2023Improving Graph Generation by Restricting Graph Bandwidthcited by 15
- 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspectivecited by 9
- 2025The quest for the GRAph Level autoEncoder (GRALE)cited by 8
- 2022An efficient graph generative model for navigating ultra-large combinatorial synthesis librariescited by 5
- 2023Self-Supervised Detection of Perfect and Partial Input-Dependent Symmetriescited by 4
- 2024Signed Graph Autoencoder for Explainable and Polarization-Aware Network Embeddingscited by 4
- 2024Self-supervised Photographic Image Layout Representation Learningcited by 3
- 2025Generative Models for Crystalline Materialscited by 3
- 2024Interpreting Equivariant Representationscited by 2
- 2024Whole-Graph Representation Learning For the Classification of Signed Networkscited by 1
12 most cited of 21 All 21 (JSON)
- 2026GeoGAE: Scalable Graph-Level Autoencoding via Hyperball Cloud Representations28 Sep 2026
- 2026GraViti: Graph-Level Variational Autoencoders with Relaxed Permutation Invariance15 May 2026
- 2026Phishing the Phishers with SpecularNet: Hierarchical Graph Autoencoding for Reference-Free Web Phishing Detection2 Mar 2026
- 2026Building Deep Graph Predictors with Graph Imitation Learning21 Jan 2026
- 2025Generative Models for Crystalline Materials27 Nov 2025
- 2025Exploring Semantic Clustering and Similarity Search for Heterogeneous Traffic Scenario Graph7 Jul 2025
- 2025Decoding Cortical Microcircuits: A Generative Model for Latent Space Exploration and Controlled Synthesis29 May 2025
- 2025The quest for the GRAph Level autoEncoder (GRALE)28 May 2025
- 2025RECON: Robust symmetry discovery via Explicit Canonical Orientation Normalization19 May 2025
- 2025Evolving Hard Maximum Cut Instances for Quantum Approximate Optimization Algorithms30 Jan 2025
- 2024Whole-Graph Representation Learning For the Classification of Signed Networks30 Sep 2024
- 2024Signed Graph Autoencoder for Explainable and Polarization-Aware Network Embeddings16 Sep 2024
12 newest of 21 All 21 (JSON)