mlsanityData to 7 Oct 2026

Permutation-Invariant Variational Autoencoder for Graph-Level Representation Learning

arXiv 2104.09856 ↗First posted 20 Apr 2021cs.LGcited by 23

Not on the map. Why?

Abstract (arXiv)

Recently, there has been great success in applying deep neural networks on graph structured data. Most work, however, focuses on either node- or graph-level supervised learning, such as node, link or graph classification or node-level unsupervised learning (e.g. node clustering). Despite its wide range of possible applications, graph-level unsupervised learning has not received much attention yet. This might be mainly attributed to the high representation complexity of graphs, which can be represented by n! equivalent adjacency matrices, where n is the number of nodes. In this work we address this issue by proposing a permutation-invariant variational autoencoder for graph structured data. Our proposed model indirectly learns to match the node ordering of input and output graph, without imposing a particular node ordering or performing expensive graph matching. We demonstrate the effectiveness of our proposed model on various graph reconstruction and generation tasks and evaluate the expressive power of extracted representations for downstream graph-level classification and regression.

Key facts. Cited by 23 papers in the map (data through 7 Oct 2026). Builds on 37 of its 76 references that are in the map. First posted on arXiv 20 Apr 2021.

Builds on

37 of 76 references.

References · 37

  1. 2017Attention Is All You Needcited by 59,932
  2. 2018How Powerful are Graph Neural Networks?cited by 4,355
  3. 2013Auto-Encoding Variational Bayescited by 3,980
  4. 2017Neural Message Passing for Quantum Chemistrycited by 3,460
  5. 2019A Comprehensive Survey on Graph Neural Networkscited by 2,906
  6. 2015Variational Inference with Normalizing Flowscited by 2,161
  7. 2016node2vec: Scalable Feature Learning for Networkscited by 1,913
  8. 2020Reformer: The Efficient Transformercited by 1,658
  9. 2014DeepWalk: Online Learning of Social Representationscited by 1,543
  10. 2019Generating Long Sequences with Sparse Transformerscited by 1,523
  11. 2016Variational Graph Auto-Encoderscited by 1,373
  12. 2018Learning deep representations by mutual information estimation and maximizationcited by 1,265
25 more
  1. 2016Geometric deep learning: going beyond Euclidean datacited by 1,042
  2. 2017MoleculeNet: A Benchmark for Molecular Machine Learningcited by 1,037
  3. 2015Gated Graph Sequence Neural Networkscited by 792
  4. 2018Hierarchical Graph Representation Learning with Differentiable Poolingcited by 786
  5. 2016Automatic chemical design using a data-driven continuous representation of moleculescited by 762
  6. 2015Convolutional Networks on Graphs for Learning Molecular Fingerprintscited by 751
  7. 2018Junction Tree Variational Autoencoder for Molecular Graph Generationcited by 647
  8. 2017Representation Learning on Graphs: Methods and Applicationscited by 456
  9. 2019InfoGraph: Unsupervised and Semi-supervised Graph-Level Representation Learning via Mutual Information Maximizationcited by 441
  10. 2018GraphRNN: Generating Realistic Graphs with Deep Auto-regressive Modelscited by 406
  11. 2018MolGAN: An implicit generative model for small molecular graphscited by 392
  12. 2018GraphVAE: Towards Generation of Small Graphs Using Variational Autoencoderscited by 375
  13. 2018Graph Convolutional Policy Network for Goal-Directed Molecular Graph Generationcited by 363
  14. 2020Permutation Invariant Graph Generation via Score-Based Generative Modelingcited by 263
  15. 2017graph2vec: Learning Distributed Representations of Graphscited by 228
  16. 2018Learning Deep Generative Models of Graphscited by 227
  17. 2017Network Embedding as Matrix Factorization: Unifying DeepWalk, LINE, PTE, and node2veccited by 197
  18. 2020MoFlow: An Invertible Flow Model for Generating Molecular Graphscited by 183
  19. 2017GraphGAN: Graph Representation Learning with Generative Adversarial Netscited by 121
  20. 2018Graphite: Iterative Generative Modeling of Graphscited by 112
  21. 2019Stochastic Optimization of Sorting Networks via Continuous Relaxationscited by 111
  22. 2019Graph Normalizing Flowscited by 103
  23. 2018NeVAE: A Deep Generative Model for Molecular Graphscited by 66
  24. 2020SoftSort: A Continuous Relaxation for the argsort Operatorcited by 66
  25. 2019Graph Embedding VAE: A Permutation Invariant Model of Graph Structurecited by 1

Built on by

Cited by year (2026 to 7 Oct)

Citing papers per year: 2021: 1; 2022: 2; 2023: 4; 2024: 5; 2025: 7; 2026: 4.

23 papers.

Sort:

By area:

  1. 2022Unsupervised Learning of Group Invariant and Equivariant Representationscited by 38
  2. 2023Learning Probabilistic Symmetrization for Architecture Agnostic Equivariancecited by 25
  3. 2023Improving Graph Generation by Restricting Graph Bandwidthcited by 15
  4. 2021Generating stable molecules using imitation and reinforcement learningcited by 9
  5. 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspectivecited by 9
  6. 2025The quest for the GRAph Level autoEncoder (GRALE)cited by 8
  7. 2022An efficient graph generative model for navigating ultra-large combinatorial synthesis librariescited by 5
  8. 2023Self-Supervised Detection of Perfect and Partial Input-Dependent Symmetriescited by 4
  9. 2024Signed Graph Autoencoder for Explainable and Polarization-Aware Network Embeddingscited by 4
  10. 2024Self-supervised Photographic Image Layout Representation Learningcited by 3
  11. 2025Generative Models for Crystalline Materialscited by 3
  12. 2024Interpreting Equivariant Representationscited by 2
11 more
  1. 2025Toward Real-World Table Agents: Capabilities, Workflows, and Design Principles for LLM-based Table Intelligencecited by 2
  2. 2024Whole-Graph Representation Learning For the Classification of Signed Networkscited by 1
  3. 2025RECON: Robust symmetry discovery via Explicit Canonical Orientation Normalizationcited by 1
  4. 2025Decoding Cortical Microcircuits: A Generative Model for Latent Space Exploration and Controlled Synthesiscited by 1
  5. 2026Phishing the Phishers with SpecularNet: Hierarchical Graph Autoencoding for Reference-Free Web Phishing Detectioncited by 1
  6. 2026GraViti: Graph-Level Variational Autoencoders with Relaxed Permutation Invariancecited by 1
  7. 2023Isomorphic-Consistent Variational Graph Auto-Encoders for Multi-Level Graph Representation Learningcited by 0
  8. 2025Evolving Hard Maximum Cut Instances for Quantum Approximate Optimization Algorithmscited by 0
  9. 2025Exploring Semantic Clustering and Similarity Search for Heterogeneous Traffic Scenario Graphcited by 0
  10. 2026Building Deep Graph Predictors with Graph Imitation Learningcited by 0
  11. 2026GeoGAE: Scalable Graph-Level Autoencoding via Hyperball Cloud Representationscited by 0