A Structural Causal Model for MR Images of Multiple Sclerosis
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Abstract (arXiv)
Precision medicine involves answering counterfactual questions such as "Would this patient respond better to treatment A or treatment B?" These types of questions are causal in nature and require the tools of causal inference to be answered, e.g., with a structural causal model (SCM). In this work, we develop an SCM that models the interaction between demographic information, disease covariates, and magnetic resonance (MR) images of the brain for people with multiple sclerosis. Inference in the SCM generates counterfactual images that show what an MR image of the brain would look like if demographic or disease covariates are changed. These images can be used for modeling disease progression or used for image processing tasks where controlling for confounders is necessary.
Key facts. Cited by 21 papers in the map (data through 7 Oct 2026). Builds on 23 of its 48 references that are in the map. First posted on arXiv 4 Mar 2021.
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23 of 48 references.
References · 23
- 2019PyTorch: An Imperative Style, High-Performance Deep Learning Librarycited by 20,160
- 2017Squeeze-and-Excitation Networkscited by 4,763
- 2016Categorical Reparameterization with Gumbel-Softmaxcited by 2,708
- 2017What Uncertainties Do We Need in Bayesian Deep Learning for Computer Vision?cited by 2,335
- 2016Variational Inference: A Review for Statisticianscited by 1,466
- 2016InfoGAN: Interpretable Representation Learning by Information Maximizing Generative Adversarial Netscited by 858
- 2016Improving Variational Inference with Inverse Autoregressive Flowcited by 636
- 2020NVAE: A Deep Hierarchical Variational Autoencodercited by 635
- 2015Cyclical Learning Rates for Training Neural Networkscited by 627
- 2016Weight Normalization: A Simple Reparameterization to Accelerate Training of Deep Neural Networkscited by 541
- 2018Pyro: Deep Universal Probabilistic Programmingcited by 379
- 2016Ladder Variational Autoencoderscited by 315
11 more
- 2015A note on the evaluation of generative modelscited by 291
- 2020Deep Structural Causal Models for Tractable Counterfactual Inferencecited by 210
- 2019Causality matters in medical imagingcited by 193
- 2018Distribution Matching Losses Can Hallucinate Features in Medical Image Translationcited by 99
- 2018An Introduction to Probabilistic Programmingcited by 62
- 2020A Sober Look at the Unsupervised Learning of Disentangled Representations and their Evaluationcited by 52
- 2020Invertible Generative Modeling using Linear Rational Splinescited by 39
- 2018Evaluating the Impact of Intensity Normalization on MR Image Synthesiscited by 26
- 2016Deep Amortized Inference for Probabilistic Programscited by 22
- 2019Degenerative Adversarial NeuroImage Nets: Generating Images that Mimic Disease Progressioncited by 21
- 2020Pseudo-healthy synthesis with pathology disentanglement and adversarial learningcited by 19
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Citing papers per year: 2021: 1; 2022: 8; 2023: 5; 2024: 3; 2025: 2; 2026: 2.
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- 2022Causal Machine Learning for Healthcare and Precision Medicinecited by 68
- 2021Learning Disentangled Representations in the Imaging Domaincited by 46
- 2022Counterfactual harmcited by 29
- 2023RadEdit: stress-testing biomedical vision models via diffusion image editingcited by 28
- 2022A Review of Causality for Learning Algorithms in Medical Image Analysiscited by 18
- 2022CaRTS: Causality-driven Robot Tool Segmentation from Vision and Kinematics Datacited by 16
- 2022Deep Structural Causal Shape Modelscited by 11
- 2022Counterfactual Image Synthesis for Discovery of Personalized Predictive Image Markerscited by 10
- 2023Emerging Synergies in Causality and Deep Generative Models: A Surveycited by 10
- 2025Diffusion Counterfactual Generation with Semantic Abductioncited by 8
- 2023LesionMix: A Lesion-Level Data Augmentation Method for Medical Image Segmentationcited by 7
- 2022Subject-Specific Lesion Generation and Pseudo-Healthy Synthesis for Multiple Sclerosis Brain Imagescited by 5
9 more
- 2022Rethinking Causality-driven Robot Tool Segmentation with Temporal Constraintscited by 5
- 2024Applications of interpretable deep learning in neuroimaging: a comprehensive reviewcited by 3
- 2023Punctate White Matter Lesion Segmentation in Preterm Infants Powered by Counterfactually Generative Learningcited by 2
- 2024SegHeD+: Segmentation of Heterogeneous Data for Multiple Sclerosis Lesions with Anatomical Constraints and Lesion-aware Augmentationcited by 1
- 2025RoentMod: A Synthetic Chest X-Ray Modification Model to Identify and Correct Image Interpretation Model Shortcutscited by 1
- 2026Radiologist-Guided Causal Concept Bottleneck Models for Chest X-Ray Interpretationcited by 1
- 2023Causal Image Synthesis of Brain MR in 3Dcited by 0
- 2024Longitudinal Causal Image Synthesiscited by 0
- 2026Geodesic-informed Generative Diffusion Model For Topology-preserved Image Video Generationcited by 0
- 2026Geodesic-informed Generative Diffusion Model For Topology-preserved Image Video Generation8 Sep 2026
- 2026Radiologist-Guided Causal Concept Bottleneck Models for Chest X-Ray Interpretation8 May 2026
- 2025RoentMod: A Synthetic Chest X-Ray Modification Model to Identify and Correct Image Interpretation Model Shortcuts10 Sep 2025
- 2025Diffusion Counterfactual Generation with Semantic Abduction9 Jun 2025
- 2024SegHeD+: Segmentation of Heterogeneous Data for Multiple Sclerosis Lesions with Anatomical Constraints and Lesion-aware Augmentation14 Dec 2024
- 2024Longitudinal Causal Image Synthesis23 Oct 2024
- 2024Applications of interpretable deep learning in neuroimaging: a comprehensive review30 May 2024
- 2023RadEdit: stress-testing biomedical vision models via diffusion image editing20 Dec 2023
- 2023Punctate White Matter Lesion Segmentation in Preterm Infants Powered by Counterfactually Generative Learning7 Sep 2023
- 2023LesionMix: A Lesion-Level Data Augmentation Method for Medical Image Segmentation17 Aug 2023
- 2023Causal Image Synthesis of Brain MR in 3D25 Mar 2023
- 2023Emerging Synergies in Causality and Deep Generative Models: A Survey29 Jan 2023
9 more
- 2022Rethinking Causality-driven Robot Tool Segmentation with Temporal Constraints30 Nov 2022
- 2022Deep Structural Causal Shape Models23 Aug 2022
- 2022Counterfactual Image Synthesis for Discovery of Personalized Predictive Image Markers3 Aug 2022
- 2022Subject-Specific Lesion Generation and Pseudo-Healthy Synthesis for Multiple Sclerosis Brain Images3 Aug 2022
- 2022A Review of Causality for Learning Algorithms in Medical Image Analysis11 Jun 2022
- 2022Causal Machine Learning for Healthcare and Precision Medicine23 May 2022
- 2022Counterfactual harm27 Apr 2022
- 2022CaRTS: Causality-driven Robot Tool Segmentation from Vision and Kinematics Data15 Mar 2022
- 2021Learning Disentangled Representations in the Imaging Domain26 Aug 2021
- 2022Deep Structural Causal Shape Modelscited by 11
- 2022Deep Structural Causal Shape Models23 Aug 2022
- 2022Causal Machine Learning for Healthcare and Precision Medicinecited by 68
- 2021Learning Disentangled Representations in the Imaging Domaincited by 46
- 2022Counterfactual harmcited by 29
- 2023RadEdit: stress-testing biomedical vision models via diffusion image editingcited by 28
- 2022A Review of Causality for Learning Algorithms in Medical Image Analysiscited by 18
- 2022CaRTS: Causality-driven Robot Tool Segmentation from Vision and Kinematics Datacited by 16
- 2022Counterfactual Image Synthesis for Discovery of Personalized Predictive Image Markerscited by 10
- 2023Emerging Synergies in Causality and Deep Generative Models: A Surveycited by 10
- 2023LesionMix: A Lesion-Level Data Augmentation Method for Medical Image Segmentationcited by 7
- 2022Subject-Specific Lesion Generation and Pseudo-Healthy Synthesis for Multiple Sclerosis Brain Imagescited by 5
- 2022Rethinking Causality-driven Robot Tool Segmentation with Temporal Constraintscited by 5
- 2024Applications of interpretable deep learning in neuroimaging: a comprehensive reviewcited by 3
12 most cited of 18 All 18 (JSON)
- 2026Radiologist-Guided Causal Concept Bottleneck Models for Chest X-Ray Interpretation8 May 2026
- 2025RoentMod: A Synthetic Chest X-Ray Modification Model to Identify and Correct Image Interpretation Model Shortcuts10 Sep 2025
- 2024SegHeD+: Segmentation of Heterogeneous Data for Multiple Sclerosis Lesions with Anatomical Constraints and Lesion-aware Augmentation14 Dec 2024
- 2024Longitudinal Causal Image Synthesis23 Oct 2024
- 2024Applications of interpretable deep learning in neuroimaging: a comprehensive review30 May 2024
- 2023RadEdit: stress-testing biomedical vision models via diffusion image editing20 Dec 2023
- 2023Punctate White Matter Lesion Segmentation in Preterm Infants Powered by Counterfactually Generative Learning7 Sep 2023
- 2023LesionMix: A Lesion-Level Data Augmentation Method for Medical Image Segmentation17 Aug 2023
- 2023Causal Image Synthesis of Brain MR in 3D25 Mar 2023
- 2023Emerging Synergies in Causality and Deep Generative Models: A Survey29 Jan 2023
- 2022Rethinking Causality-driven Robot Tool Segmentation with Temporal Constraints30 Nov 2022
- 2022Counterfactual Image Synthesis for Discovery of Personalized Predictive Image Markers3 Aug 2022
12 newest of 18 All 18 (JSON)