Bayesian Uncertainty Estimation of Learned Variational MRI Reconstruction
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Abstract (arXiv)
Recent deep learning approaches focus on improving quantitative scores of dedicated benchmarks, and therefore only reduce the observation-related (aleatoric) uncertainty. However, the model-immanent (epistemic) uncertainty is less frequently systematically analyzed. In this work, we introduce a Bayesian variational framework to quantify the epistemic uncertainty. To this end, we solve the linear inverse problem of undersampled MRI reconstruction in a variational setting. The associated energy functional is composed of a data fidelity term and the total deep variation (TDV) as a learned parametric regularizer. To estimate the epistemic uncertainty we draw the parameters of the TDV regularizer from a multivariate Gaussian distribution, whose mean and covariance matrix are learned in a stochastic optimal control problem. In several numerical experiments, we demonstrate that our approach yields competitive results for undersampled MRI reconstruction. Moreover, we can accurately quantify the pixelwise epistemic uncertainty, which can serve radiologists as an additional resource to visualize reconstruction reliability.
Key facts. Cited by 30 papers in the map (data through 7 Oct 2026). Builds on 21 of its 43 references that are in the map. First posted on arXiv 12 Feb 2021.
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21 of 43 references.
References · 21
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9 more
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Citing papers per year: 2021: 1; 2022: 5; 2023: 6; 2024: 3; 2025: 11; 2026: 4.
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- 2023A Review of Uncertainty Estimation and its Application in Medical Imagingcited by 59
- 2022Physics-Driven Deep Learning for Computational Magnetic Resonance Imagingcited by 49
- 2022Bayesian MRI Reconstruction with Joint Uncertainty Estimation using Diffusion Modelscited by 46
- 2023A review of uncertainty quantification in medical image analysis: probabilistic and non-probabilistic methodscited by 39
- 2025Solving Inverse Problems with FLAIRcited by 16
- 2021A review and experimental evaluation of deep learning methods for MRI reconstructioncited by 13
- 2022Posterior-Variance-Based Error Quantification for Inverse Problems in Imagingcited by 12
- 2025Learning Regularization Functionals for Inverse Problems: A Comparative Studycited by 12
- 2023Uncertainty Estimation and Propagation in Accelerated MRI Reconstructioncited by 10
- 2024Task-Driven Uncertainty Quantification in Inverse Problems via Conformal Predictioncited by 8
- 2023Propagation and Attribution of Uncertainty in Medical Imaging Pipelinescited by 5
- 2024NPB-REC: A Non-parametric Bayesian Deep-learning Approach for Undersampled MRI Reconstruction with Uncertainty Estimationcited by 4
18 more
- 2022Posterior temperature optimized Bayesian models for inverse problems in medical imagingcited by 3
- 2023PixCUE: Joint Uncertainty Estimation and Image Reconstruction in MRI using Deep Pixel Classificationcited by 3
- 2023Uncertainty Estimation and Out-of-Distribution Detection for Deep Learning-Based Image Reconstruction using the Local Lipschitzcited by 2
- 2025Conformal Bounds on Full-Reference Image Quality for Imaging Inverse Problemscited by 2
- 2025Guiding Quantitative MRI Reconstruction with Phase-wise Uncertaintycited by 1
- 2025A Comprehensive Survey on Magnetic Resonance Image Reconstructioncited by 1
- 2025BUFF: Bayesian Uncertainty Guided Diffusion Probabilistic Model for Single Image Super-Resolutioncited by 1
- 2025OCSplats: Observation Completeness Quantification and Label Noise Separation in 3DGScited by 1
- 2025CUTE-MRI: Conformalized Uncertainty-based framework for Time-adaptivE MRIcited by 1
- 2026ReDiff: Reliability-Guided Diffusion for Trustworthy Ultra-Low-Field to High-Field MRI Synthesiscited by 1
- 2026MotionDPS: Motion-Compensated 3D Brain MRI Reconstructioncited by 1
- 2022SoftDropConnect (SDC) -- Effective and Efficient Quantification of the Network Uncertainty in Deep MR Image Analysiscited by 0
- 2024R2D2 image reconstruction with model uncertainty quantification in radio astronomycited by 0
- 2025Evaluating structural uncertainty in accelerated MRI: are voxelwise measures useful surrogates?cited by 0
- 2025Uncertainty Estimation for Trust Attribution to Speed-of-Sound Reconstruction with Variational Networkscited by 0
- 2025Efficient Noise Calculation in Deep Learning-based MRI Reconstructionscited by 0
- 2026Pixelwise Uncertainty Quantification of Accelerated MRI Reconstructioncited by 0
- 2026Measured-Subspace Consistency: A Plug-and-Play Operator for Diffusion Posterior Sampling in Accelerated MRI Reconstructioncited by 0
- 2026Measured-Subspace Consistency: A Plug-and-Play Operator for Diffusion Posterior Sampling in Accelerated MRI Reconstruction26 Jun 2026
- 2026MotionDPS: Motion-Compensated 3D Brain MRI Reconstruction21 May 2026
- 2026ReDiff: Reliability-Guided Diffusion for Trustworthy Ultra-Low-Field to High-Field MRI Synthesis11 Mar 2026
- 2026Pixelwise Uncertainty Quantification of Accelerated MRI Reconstruction19 Jan 2026
- 2025Learning Regularization Functionals for Inverse Problems: A Comparative Study2 Oct 2025
- 2025CUTE-MRI: Conformalized Uncertainty-based framework for Time-adaptivE MRI20 Aug 2025
- 2025OCSplats: Observation Completeness Quantification and Label Noise Separation in 3DGS2 Aug 2025
- 2025Solving Inverse Problems with FLAIR3 Jun 2025
- 2025Conformal Bounds on Full-Reference Image Quality for Imaging Inverse Problems14 May 2025
- 2025Efficient Noise Calculation in Deep Learning-based MRI Reconstructions4 May 2025
- 2025Uncertainty Estimation for Trust Attribution to Speed-of-Sound Reconstruction with Variational Networks15 Apr 2025
- 2025BUFF: Bayesian Uncertainty Guided Diffusion Probabilistic Model for Single Image Super-Resolution4 Apr 2025
18 more
- 2025Evaluating structural uncertainty in accelerated MRI: are voxelwise measures useful surrogates?13 Mar 2025
- 2025A Comprehensive Survey on Magnetic Resonance Image Reconstruction10 Mar 2025
- 2025Guiding Quantitative MRI Reconstruction with Phase-wise Uncertainty28 Feb 2025
- 2024Task-Driven Uncertainty Quantification in Inverse Problems via Conformal Prediction28 May 2024
- 2024NPB-REC: A Non-parametric Bayesian Deep-learning Approach for Undersampled MRI Reconstruction with Uncertainty Estimation6 Apr 2024
- 2024R2D2 image reconstruction with model uncertainty quantification in radio astronomy26 Mar 2024
- 2023A review of uncertainty quantification in medical image analysis: probabilistic and non-probabilistic methods9 Oct 2023
- 2023Propagation and Attribution of Uncertainty in Medical Imaging Pipelines28 Sep 2023
- 2023Uncertainty Estimation and Propagation in Accelerated MRI Reconstruction4 Aug 2023
- 2023Uncertainty Estimation and Out-of-Distribution Detection for Deep Learning-Based Image Reconstruction using the Local Lipschitz12 May 2023
- 2023PixCUE: Joint Uncertainty Estimation and Image Reconstruction in MRI using Deep Pixel Classification28 Feb 2023
- 2023A Review of Uncertainty Estimation and its Application in Medical Imaging16 Feb 2023
- 2022Posterior-Variance-Based Error Quantification for Inverse Problems in Imaging23 Dec 2022
- 2022Physics-Driven Deep Learning for Computational Magnetic Resonance Imaging23 Mar 2022
- 2022Bayesian MRI Reconstruction with Joint Uncertainty Estimation using Diffusion Models3 Feb 2022
- 2022Posterior temperature optimized Bayesian models for inverse problems in medical imaging2 Feb 2022
- 2022SoftDropConnect (SDC) -- Effective and Efficient Quantification of the Network Uncertainty in Deep MR Image Analysis20 Jan 2022
- 2021A review and experimental evaluation of deep learning methods for MRI reconstruction17 Sep 2021
- 2022Bayesian MRI Reconstruction with Joint Uncertainty Estimation using Diffusion Modelscited by 46
- 2025Solving Inverse Problems with FLAIRcited by 16
- 2025BUFF: Bayesian Uncertainty Guided Diffusion Probabilistic Model for Single Image Super-Resolutioncited by 1
- 2026ReDiff: Reliability-Guided Diffusion for Trustworthy Ultra-Low-Field to High-Field MRI Synthesiscited by 1
- 2026ReDiff: Reliability-Guided Diffusion for Trustworthy Ultra-Low-Field to High-Field MRI Synthesis11 Mar 2026
- 2025Solving Inverse Problems with FLAIR3 Jun 2025
- 2025BUFF: Bayesian Uncertainty Guided Diffusion Probabilistic Model for Single Image Super-Resolution4 Apr 2025
- 2022Bayesian MRI Reconstruction with Joint Uncertainty Estimation using Diffusion Models3 Feb 2022
- 2023A Review of Uncertainty Estimation and its Application in Medical Imagingcited by 59
- 2022Physics-Driven Deep Learning for Computational Magnetic Resonance Imagingcited by 49
- 2023A review of uncertainty quantification in medical image analysis: probabilistic and non-probabilistic methodscited by 39
- 2021A review and experimental evaluation of deep learning methods for MRI reconstructioncited by 13
- 2022Posterior-Variance-Based Error Quantification for Inverse Problems in Imagingcited by 12
- 2025Learning Regularization Functionals for Inverse Problems: A Comparative Studycited by 12
- 2023Uncertainty Estimation and Propagation in Accelerated MRI Reconstructioncited by 10
- 2024Task-Driven Uncertainty Quantification in Inverse Problems via Conformal Predictioncited by 8
- 2023Propagation and Attribution of Uncertainty in Medical Imaging Pipelinescited by 5
- 2024NPB-REC: A Non-parametric Bayesian Deep-learning Approach for Undersampled MRI Reconstruction with Uncertainty Estimationcited by 4
- 2022Posterior temperature optimized Bayesian models for inverse problems in medical imagingcited by 3
- 2023PixCUE: Joint Uncertainty Estimation and Image Reconstruction in MRI using Deep Pixel Classificationcited by 3
12 most cited of 26 All 26 (JSON)
- 2026Measured-Subspace Consistency: A Plug-and-Play Operator for Diffusion Posterior Sampling in Accelerated MRI Reconstruction26 Jun 2026
- 2026MotionDPS: Motion-Compensated 3D Brain MRI Reconstruction21 May 2026
- 2026Pixelwise Uncertainty Quantification of Accelerated MRI Reconstruction19 Jan 2026
- 2025Learning Regularization Functionals for Inverse Problems: A Comparative Study2 Oct 2025
- 2025CUTE-MRI: Conformalized Uncertainty-based framework for Time-adaptivE MRI20 Aug 2025
- 2025OCSplats: Observation Completeness Quantification and Label Noise Separation in 3DGS2 Aug 2025
- 2025Conformal Bounds on Full-Reference Image Quality for Imaging Inverse Problems14 May 2025
- 2025Efficient Noise Calculation in Deep Learning-based MRI Reconstructions4 May 2025
- 2025Uncertainty Estimation for Trust Attribution to Speed-of-Sound Reconstruction with Variational Networks15 Apr 2025
- 2025Evaluating structural uncertainty in accelerated MRI: are voxelwise measures useful surrogates?13 Mar 2025
- 2025A Comprehensive Survey on Magnetic Resonance Image Reconstruction10 Mar 2025
- 2025Guiding Quantitative MRI Reconstruction with Phase-wise Uncertainty28 Feb 2025
12 newest of 26 All 26 (JSON)