Robustness questions the interpretability of graph neural networks: what to do?

Graph Neural Networks (GNNs) have become a cornerstone in graph-based data analysis, with applications in diverse domains such as bioinformatics, social networks, and recommendation systems. However, the interplay between model interpretability and robustness remains poorly understood, especially under adversarial scenarios like poisoning and evasion attacks. This paper presents a comprehensive benchmark to systematically analyze the impact of various factors on the interpretability of GNNs, including the influence of robustness-enhancing defense mechanisms. We evaluate six GNN architectures based on GCN, SAGE, GIN, and GAT across five datasets from two distinct domains, employing four interpretability metrics: Fidelity, Stability, Consistency, and Sparsity. Our study examines how defenses against poisoning and evasion attacks, applied before and during model training, affect interpretability and highlights critical trade-offs between robustness and interpretability. The framework will be published as open source. The results reveal significant variations in interpretability depending on the chosen defense methods and model architecture characteristics. By establishing a standardized benchmark, this work provides a foundation for developing GNNs that are both robust to adversarial threats and interpretable, facilitating trust in their deployment in sensitive applications.