t-viSNE: Interactive Assessment and Interpretation of t-SNE Projections
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Abstract (arXiv)
t-Distributed Stochastic Neighbor Embedding (t-SNE) for the visualization of multidimensional data has proven to be a popular approach, with successful applications in a wide range of domains. Despite their usefulness, t-SNE projections can be hard to interpret or even misleading, which hurts the trustworthiness of the results. Understanding the details of t-SNE itself and the reasons behind specific patterns in its output may be a daunting task, especially for non-experts in dimensionality reduction. In this work, we present t-viSNE, an interactive tool for the visual exploration of t-SNE projections that enables analysts to inspect different aspects of their accuracy and meaning, such as the effects of hyper-parameters, distance and neighborhood preservation, densities and costs of specific neighborhoods, and the correlations between dimensions and visual patterns. We propose a coherent, accessible, and well-integrated collection of different views for the visualization of t-SNE projections. The applicability and usability of t-viSNE are demonstrated through hypothetical usage scenarios with real data sets. Finally, we present the results of a user study where the tool's effectiveness was evaluated. By bringing to light information that would normally be lost after running t-SNE, we hope to support analysts in using t-SNE and making its results better understandable.
Key facts. Cited by 43 papers in the map (data through 14 Oct 2026). First posted on arXiv 17 Feb 2020.
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Citing papers per year: 2021: 7; 2022: 9; 2023: 6; 2024: 7; 2025: 8; 2026: 6.
43 papers.
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- 2021Theoretical Foundations of t-SNE for Visualizing High-Dimensional Clustered Datacited by 55
- 2023Visual Analytics For Machine Learning: A Data Perspective Surveycited by 25
- 2021Measuring and Explaining the Inter-Cluster Reliability of Multidimensional Projectionscited by 20
- 2022Uniform Manifold Approximation with Two-phase Optimizationcited by 12
- 2022DendroMap: Visual Exploration of Large-Scale Image Datasets for Machine Learning with Treemapscited by 12
- 2021UnProjection: Leveraging Inverse-Projections for Visual Analytics of High-Dimensional Datacited by 8
- 2022Feature Learning for Nonlinear Dimensionality Reduction toward Maximal Extraction of Hidden Patternscited by 8
- 2022EVNet: An Explainable Deep Network for Dimension Reductioncited by 8
- 2025Stop Misusing t-SNE and UMAP for Visual Analyticscited by 8
- 2021FeatureEnVi: Visual Analytics for Feature Engineering Using Stepwise Selection and Semi-Automatic Extraction Approachescited by 7
- 2021Attribute-based Explanations of Non-Linear Embeddings of High-Dimensional Datacited by 7
- 2022Dispersed Pixel Perturbation-based Imperceptible Backdoor Trigger for Image Classifier Modelscited by 7
31 more
- 2023New Adversarial Image Detection Based on Sentiment Analysiscited by 6
- 2021HyperNP: Interactive Visual Exploration of Multidimensional Projection Hyperparameterscited by 5
- 2022HardVis: Visual Analytics to Handle Instance Hardness Using Undersampling and Oversampling Techniquescited by 5
- 2022Laplacian-based Cluster-Contractive t-SNE for High Dimensional Data Visualizationcited by 3
- 2023Visual Analytics of Multivariate Networks with Representation Learning and Composite Variable Constructioncited by 3
- 2025Visual Analytics for Explainable and Trustworthy Artificial Intelligencecited by 3
- 2023DeforestVis: Behavior Analysis of Machine Learning Models with Surrogate Decision Stumpscited by 2
- 2024DimVis: Interpreting Visual Clusters in Dimensionality Reduction With Explainable Boosting Machinecited by 2
- 2024Pattern or Artifact? Interactively Exploring Embedding Quality with TRACEcited by 2
- 2021Exploring Multi-dimensional Data via Subset Embeddingcited by 1
- 2023Non-destructive Fault Diagnosis of Electronic Interconnects by Learning Signal Patterns of Reflection Coefficient in the Frequency Domaincited by 1
- 2024Enhancing Dimension-Reduced Scatter Plots with Class and Feature Centroidscited by 1
- 2024VERA: Generating Visual Explanations of Two-Dimensional Embeddings via Region Annotationcited by 1
- 2024Feature Clock: High-Dimensional Effects in Two-Dimensional Plotscited by 1
- 2024Federated t-SNE and UMAP for Distributed Data Visualizationcited by 1
- 2025Dataset-Adaptive Dimensionality Reductioncited by 1
- 2025UMATO: Bridging Local and Global Structures for Reliable Visual Analytics with Dimensionality Reductioncited by 1
- 2025Enhancing Multimodal Protein Function Prediction Through Dual-Branch Dynamic Selection with Reconstructive Pre-Trainingcited by 1
- 2026LangLasso: Interactive Cluster Descriptions through LLM Explanationcited by 1
- 2026Evaluating Interactive 2D Visualization as a Sample Selection Strategy for Biomedical Time-Series Data Annotationcited by 1
- 2022Scalable semi-supervised dimensionality reduction with GPU-accelerated EmbedSOMcited by 0
- 2022Opening the black-box of Neighbor Embedding with Hotelling's T2 statistic and Q-residualscited by 0
- 2023BI-LAVA: Biocuration with Hierarchical Image Labeling through Active Learning and Visual Analysiscited by 0
- 2024Lens functions for exploring UMAP Projections with Domain Knowledgecited by 0
- 2025InfoClus: Informative Clustering of High-dimensional Data Embeddingscited by 0
- 2025Navigating High-Dimensional Backstage: A Guide for Exploring Literature for the Reliable Use of Dimensionality Reductioncited by 0
- 2025Why Can't I See My Clusters? A Precision-Recall Approach to Dimensionality Reduction Validationcited by 0
- 2026LCIP: Loss-Controlled Inverse Projection of High-Dimensional Image Datacited by 0
- 2026FADEx: Feature Attribution and Distortion-based Explanation of Dimensionality Reductioncited by 0
- 2026Understanding Differentiable Embeddings Through Differential and Integral Geometrycited by 0
- 2026TSExplorer: An interactive data annotation and exploration tool for time-series datacited by 0
- 2026TSExplorer: An interactive data annotation and exploration tool for time-series data31 Aug 2026
- 2026Understanding Differentiable Embeddings Through Differential and Integral Geometry7 Aug 2026
- 2026FADEx: Feature Attribution and Distortion-based Explanation of Dimensionality Reduction29 Jul 2026
- 2026Evaluating Interactive 2D Visualization as a Sample Selection Strategy for Biomedical Time-Series Data Annotation27 Mar 2026
- 2026LCIP: Loss-Controlled Inverse Projection of High-Dimensional Image Data11 Feb 2026
- 2026LangLasso: Interactive Cluster Descriptions through LLM Explanation15 Jan 2026
- 2025Enhancing Multimodal Protein Function Prediction Through Dual-Branch Dynamic Selection with Reconstructive Pre-Training6 Nov 2025
- 2025Why Can't I See My Clusters? A Precision-Recall Approach to Dimensionality Reduction Validation4 Sep 2025
- 2025UMATO: Bridging Local and Global Structures for Reliable Visual Analytics with Dimensionality Reduction22 Aug 2025
- 2025Dataset-Adaptive Dimensionality Reduction16 Jul 2025
- 2025Visual Analytics for Explainable and Trustworthy Artificial Intelligence14 Jul 2025
- 2025Navigating High-Dimensional Backstage: A Guide for Exploring Literature for the Reliable Use of Dimensionality Reduction10 Jun 2025
31 more
- 2025Stop Misusing t-SNE and UMAP for Visual Analytics10 Jun 2025
- 2025InfoClus: Informative Clustering of High-dimensional Data Embeddings15 Apr 2025
- 2024Federated t-SNE and UMAP for Distributed Data Visualization18 Dec 2024
- 2024Feature Clock: High-Dimensional Effects in Two-Dimensional Plots2 Aug 2024
- 2024Pattern or Artifact? Interactively Exploring Embedding Quality with TRACE18 Jun 2024
- 2024VERA: Generating Visual Explanations of Two-Dimensional Embeddings via Region Annotation7 Jun 2024
- 2024Lens functions for exploring UMAP Projections with Domain Knowledge15 May 2024
- 2024Enhancing Dimension-Reduced Scatter Plots with Class and Feature Centroids29 Mar 2024
- 2024DimVis: Interpreting Visual Clusters in Dimensionality Reduction With Explainable Boosting Machine10 Feb 2024
- 2023BI-LAVA: Biocuration with Hierarchical Image Labeling through Active Learning and Visual Analysis15 Aug 2023
- 2023Visual Analytics For Machine Learning: A Data Perspective Survey15 Jul 2023
- 2023New Adversarial Image Detection Based on Sentiment Analysis3 May 2023
- 2023Non-destructive Fault Diagnosis of Electronic Interconnects by Learning Signal Patterns of Reflection Coefficient in the Frequency Domain20 Apr 2023
- 2023DeforestVis: Behavior Analysis of Machine Learning Models with Surrogate Decision Stumps31 Mar 2023
- 2023Visual Analytics of Multivariate Networks with Representation Learning and Composite Variable Construction16 Mar 2023
- 2022EVNet: An Explainable Deep Network for Dimension Reduction21 Nov 2022
- 2022Opening the black-box of Neighbor Embedding with Hotelling's T2 statistic and Q-residuals5 Sep 2022
- 2022Dispersed Pixel Perturbation-based Imperceptible Backdoor Trigger for Image Classifier Models19 Aug 2022
- 2022Laplacian-based Cluster-Contractive t-SNE for High Dimensional Data Visualization25 Jul 2022
- 2022Feature Learning for Nonlinear Dimensionality Reduction toward Maximal Extraction of Hidden Patterns28 Jun 2022
- 2022DendroMap: Visual Exploration of Large-Scale Image Datasets for Machine Learning with Treemaps14 May 2022
- 2022Uniform Manifold Approximation with Two-phase Optimization1 May 2022
- 2022HardVis: Visual Analytics to Handle Instance Hardness Using Undersampling and Oversampling Techniques29 Mar 2022
- 2022Scalable semi-supervised dimensionality reduction with GPU-accelerated EmbedSOM3 Jan 2022
- 2021UnProjection: Leveraging Inverse-Projections for Visual Analytics of High-Dimensional Data2 Nov 2021
- 2021Attribute-based Explanations of Non-Linear Embeddings of High-Dimensional Data28 Jul 2021
- 2021Measuring and Explaining the Inter-Cluster Reliability of Multidimensional Projections16 Jul 2021
- 2021HyperNP: Interactive Visual Exploration of Multidimensional Projection Hyperparameters25 Jun 2021
- 2021Theoretical Foundations of t-SNE for Visualizing High-Dimensional Clustered Data16 May 2021
- 2021Exploring Multi-dimensional Data via Subset Embedding24 Apr 2021
- 2021FeatureEnVi: Visual Analytics for Feature Engineering Using Stepwise Selection and Semi-Automatic Extraction Approaches26 Mar 2021
- 2021Theoretical Foundations of t-SNE for Visualizing High-Dimensional Clustered Datacited by 55
- 2023Visual Analytics For Machine Learning: A Data Perspective Surveycited by 25
- 2021Measuring and Explaining the Inter-Cluster Reliability of Multidimensional Projectionscited by 20
- 2022Uniform Manifold Approximation with Two-phase Optimizationcited by 12
- 2022DendroMap: Visual Exploration of Large-Scale Image Datasets for Machine Learning with Treemapscited by 12
- 2021UnProjection: Leveraging Inverse-Projections for Visual Analytics of High-Dimensional Datacited by 8
- 2022Feature Learning for Nonlinear Dimensionality Reduction toward Maximal Extraction of Hidden Patternscited by 8
- 2022EVNet: An Explainable Deep Network for Dimension Reductioncited by 8
- 2025Stop Misusing t-SNE and UMAP for Visual Analyticscited by 8
- 2021FeatureEnVi: Visual Analytics for Feature Engineering Using Stepwise Selection and Semi-Automatic Extraction Approachescited by 7
- 2021Attribute-based Explanations of Non-Linear Embeddings of High-Dimensional Datacited by 7
- 2022Dispersed Pixel Perturbation-based Imperceptible Backdoor Trigger for Image Classifier Modelscited by 7
12 most cited of 43 All 43 (JSON)
- 2026TSExplorer: An interactive data annotation and exploration tool for time-series data31 Aug 2026
- 2026Understanding Differentiable Embeddings Through Differential and Integral Geometry7 Aug 2026
- 2026FADEx: Feature Attribution and Distortion-based Explanation of Dimensionality Reduction29 Jul 2026
- 2026Evaluating Interactive 2D Visualization as a Sample Selection Strategy for Biomedical Time-Series Data Annotation27 Mar 2026
- 2026LCIP: Loss-Controlled Inverse Projection of High-Dimensional Image Data11 Feb 2026
- 2026LangLasso: Interactive Cluster Descriptions through LLM Explanation15 Jan 2026
- 2025Enhancing Multimodal Protein Function Prediction Through Dual-Branch Dynamic Selection with Reconstructive Pre-Training6 Nov 2025
- 2025Why Can't I See My Clusters? A Precision-Recall Approach to Dimensionality Reduction Validation4 Sep 2025
- 2025UMATO: Bridging Local and Global Structures for Reliable Visual Analytics with Dimensionality Reduction22 Aug 2025
- 2025Dataset-Adaptive Dimensionality Reduction16 Jul 2025
- 2025Visual Analytics for Explainable and Trustworthy Artificial Intelligence14 Jul 2025
- 2025Navigating High-Dimensional Backstage: A Guide for Exploring Literature for the Reliable Use of Dimensionality Reduction10 Jun 2025
12 newest of 43 All 43 (JSON)