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Symmetry-Breaking De Novo Crystal Generation via Markovian Jump Diffusion

arXiv 2608.13457 ↗First posted 13 Aug 2026cs.LGcited by 0

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Abstract (arXiv)

Generating crystals has recently attracted significant interest due to their broad applications in materials science. However, existing generative models struggle to produce complete crystallographic specifications, limiting their ability to capture global symmetry and structural dependencies. In particular, current state-of-the-art approaches generate crystals only up to site symmetries and rely on sampling space groups from empirical distributions during generation. Inspired by spontaneous symmetry breaking in physics, where crystals break symmetries under external conditions, we propose a novel diffusion-based framework that generates full structure specifications by reversing from the lowest-symmetry priors. Our method leverages a Markovian jump-diffusion process to model these symmetry-breaking dynamics, enabling it to traverse different space groups in a physically motivated manner. Our model, dubbed Symmetry-breaking Crystal Diffusion (SbCD), introduces a principled approach to explicitly incorporate inter-space-group transitions into the generative process. In de novo generation experiments on MP20 and MPTS-52, SbCD outperforms its symmetry-preserving counterpart by a substantial margin, offering a promising perspective for generative modeling of crystalline materials.

Key facts. No citing papers in the map yet (data through 14 Oct 2026). Builds on 17 of its 37 references that are in the map. First posted on arXiv 13 Aug 2026.

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References · 17

  1. 2020Denoising Diffusion Probabilistic Modelscited by 21,076
  2. 2020Denoising Diffusion Implicit Modelscited by 9,781
  3. 2015Deep Unsupervised Learning using Nonequilibrium Thermodynamicscited by 7,058
  4. 2022Flow Matching for Generative Modelingcited by 5,702
  5. 2013Auto-Encoding Variational Bayescited by 4,053
  6. 2021Structured Denoising Diffusion Models in Discrete State-Spacescited by 1,719
  7. 2022A Continuous Time Framework for Discrete Denoising Modelscited by 451
  8. 2021Crystal Diffusion Variational Autoencoder for Periodic Material Generationcited by 270
  9. 2023Crystal Structure Prediction by Joint Equivariant Diffusioncited by 148
  10. 2024FlowMM: Generating Materials with Riemannian Flow Matchingcited by 109
  11. 2024Space Group Constrained Crystal Generationcited by 73
  12. 2025SymmCD: Symmetry-Preserving Crystal Generation with Diffusion Modelscited by 51
5 more
  1. 2023Matbench Discovery -- A framework to evaluate machine learning crystal stability predictionscited by 35
  2. 2025Wyckoff Transformer: Generation of Symmetric Crystalscited by 27
  3. 2025Space Group Equivariant Crystal Diffusioncited by 15
  4. 2025Space Group Conditional Flow Matchingcited by 7
  5. 2025MiAD: Mirage Atom Diffusion for De Novo Crystal Generationcited by 4

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