mlsanityData to 7 Oct 2026

A Negative-Control Protocol for Clinical EEG Foundation-Model Benchmarks: Dataset Identity and External-Cohort Stress Testing

arXiv 2607.24519 ↗First posted 27 Jul 2026cs.LG cs.AI cs.NEcited by 3

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Abstract (arXiv)

EEG foundation-model gains may depend on cohort, montage, or probe design. We evaluated five models on five tasks across four benchmark datasets plus Korean CAUEEG, using subject-disjoint validation where identifiers exist. CAUEEG is recording-level with an annotated no-overlap held-out sensitivity. On matched CAUEEG normal/mild cognitive impairment/dementia classification (1,187 recordings), classical features reached 0.734 macro-AUROC (enhanced sensitivity: 0.736), versus BIOT-bipolar16 0.677, CBraMod 0.669, and REVE 0.568. The annotated no-overlap held-out subset preserved the classical-over-REVE ordering (0.717 versus 0.565). All five encoders decoded dataset identity at 1.000 before and after in-fold PCA-50; label permutations collapsed to chance and balanced subsamples remained at 1.000. This establishes dataset membership, not a causal site, geography, or population effect. A matched fully randomly initialized encoder was descriptively higher than pretrained REVE on CAUEEG (0.667 versus 0.570), and correct- versus scrambled-source-label LoRA runs yielded numerically similar AUROCs in unmatched descriptive sensitivities, not label-effect estimates or equivalence tests. On CHB-MIT cross-subject ictal detection, REVE reached 0.793 AUROC, versus 0.739 for the best tested enhanced nonlinear comparator, 0.691 for fully random initialization, and 0.505 for raw-signal random features. The paired REVE-minus-enhanced-comparator difference was +5.38 percentage points (95% CI -0.36 to +11.22), so comparator superiority remains unresolved; an amplitude-aware comparator also cannot be reconstructed from the retained normalized inputs. We distill montage matching, patient-overlap checks, stronger comparators, and representation controls into a reporting protocol for clinical EEG foundation-model studies.

Key facts. Cited by 3 papers in the map (data through 7 Oct 2026). Builds on 19 of its 46 references that are in the map. First posted on arXiv 27 Jul 2026.

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19 of 46 references.

References · 19

  1. 2021LoRA: Low-Rank Adaptation of Large Language Modelscited by 14,084
  2. 2020A Simple Framework for Contrastive Learning of Visual Representationscited by 11,979
  3. 2021Masked Autoencoders Are Scalable Vision Learnerscited by 7,339
  4. 2023Mamba: Linear-Time Sequence Modeling with Selective State Spacescited by 4,616
  5. 2021On the Opportunities and Risks of Foundation Modelscited by 3,961
  6. 2024Transformers are SSMs: Generalized Models and Efficient Algorithms Through Structured State Space Dualitycited by 1,283
  7. 2024Large Brain Model for Learning Generic Representations with Tremendous EEG Data in BCIcited by 311
  8. 2024CBraMod: A Criss-Cross Brain Foundation Model for EEG Decodingcited by 188
  9. 2025REVE: A Foundation Model for EEG -- Adapting to Any Setup with Large-Scale Pretraining on 25,000 Subjectscited by 70
  10. 2015Transfer Learning in Brain-Computer Interfacescited by 39
  11. 2025EEG Foundation Models: A Critical Review of Current Progress and Future Directionscited by 30
  12. 2024EEGMamba: Bidirectional State Space Model with Mixture of Experts for EEG Multi-task Classificationcited by 18
7 more
  1. 2025AdaBrain-Bench: Benchmarking Brain Foundation Models for Brain-Computer Interface Applicationscited by 16
  2. 2025EEG-Bench: A Benchmark for EEG Foundation Models in Clinical Applicationscited by 12
  3. 2026NeuroAtlas: Benchmarking Foundation Models for Clinical EEG and Brain-Computer Interfacescited by 5
  4. 2026OmniEEG-Bench: A Standardized Evaluation Benchmark for EEG Foundation Modelscited by 5
  5. 2026Beyond Accuracy: Robustness, Interpretability and Expressiveness of EEG Foundation Modelscited by 3
  6. 2026EEG-FM-Audit: A Systematic Evaluation and Analysis Pipeline for EEG Foundation Modelscited by 2
  7. 2026Cross-Cohort Spectral-Temporal Dissociation in Frozen EEG Foundation-Model Representationscited by 1

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Citing papers per year: 2026: 3.

3 papers.