A Negative-Control Protocol for Clinical EEG Foundation-Model Benchmarks: Dataset Identity and External-Cohort Stress Testing
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Abstract (arXiv)
EEG foundation-model gains may depend on cohort, montage, or probe design. We evaluated five models on five tasks across four benchmark datasets plus Korean CAUEEG, using subject-disjoint validation where identifiers exist. CAUEEG is recording-level with an annotated no-overlap held-out sensitivity. On matched CAUEEG normal/mild cognitive impairment/dementia classification (1,187 recordings), classical features reached 0.734 macro-AUROC (enhanced sensitivity: 0.736), versus BIOT-bipolar16 0.677, CBraMod 0.669, and REVE 0.568. The annotated no-overlap held-out subset preserved the classical-over-REVE ordering (0.717 versus 0.565). All five encoders decoded dataset identity at 1.000 before and after in-fold PCA-50; label permutations collapsed to chance and balanced subsamples remained at 1.000. This establishes dataset membership, not a causal site, geography, or population effect. A matched fully randomly initialized encoder was descriptively higher than pretrained REVE on CAUEEG (0.667 versus 0.570), and correct- versus scrambled-source-label LoRA runs yielded numerically similar AUROCs in unmatched descriptive sensitivities, not label-effect estimates or equivalence tests. On CHB-MIT cross-subject ictal detection, REVE reached 0.793 AUROC, versus 0.739 for the best tested enhanced nonlinear comparator, 0.691 for fully random initialization, and 0.505 for raw-signal random features. The paired REVE-minus-enhanced-comparator difference was +5.38 percentage points (95% CI -0.36 to +11.22), so comparator superiority remains unresolved; an amplitude-aware comparator also cannot be reconstructed from the retained normalized inputs. We distill montage matching, patient-overlap checks, stronger comparators, and representation controls into a reporting protocol for clinical EEG foundation-model studies.
Key facts. Cited by 3 papers in the map (data through 7 Oct 2026). Builds on 19 of its 46 references that are in the map. First posted on arXiv 27 Jul 2026.
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19 of 46 references.
References · 19
- 2021LoRA: Low-Rank Adaptation of Large Language Modelscited by 14,084
- 2020A Simple Framework for Contrastive Learning of Visual Representationscited by 11,979
- 2021Masked Autoencoders Are Scalable Vision Learnerscited by 7,339
- 2023Mamba: Linear-Time Sequence Modeling with Selective State Spacescited by 4,616
- 2021On the Opportunities and Risks of Foundation Modelscited by 3,961
- 2024Transformers are SSMs: Generalized Models and Efficient Algorithms Through Structured State Space Dualitycited by 1,283
- 2024Large Brain Model for Learning Generic Representations with Tremendous EEG Data in BCIcited by 311
- 2024CBraMod: A Criss-Cross Brain Foundation Model for EEG Decodingcited by 188
- 2025REVE: A Foundation Model for EEG -- Adapting to Any Setup with Large-Scale Pretraining on 25,000 Subjectscited by 70
- 2015Transfer Learning in Brain-Computer Interfacescited by 39
- 2025EEG Foundation Models: A Critical Review of Current Progress and Future Directionscited by 30
- 2024EEGMamba: Bidirectional State Space Model with Mixture of Experts for EEG Multi-task Classificationcited by 18
7 more
- 2025AdaBrain-Bench: Benchmarking Brain Foundation Models for Brain-Computer Interface Applicationscited by 16
- 2025EEG-Bench: A Benchmark for EEG Foundation Models in Clinical Applicationscited by 12
- 2026NeuroAtlas: Benchmarking Foundation Models for Clinical EEG and Brain-Computer Interfacescited by 5
- 2026OmniEEG-Bench: A Standardized Evaluation Benchmark for EEG Foundation Modelscited by 5
- 2026Beyond Accuracy: Robustness, Interpretability and Expressiveness of EEG Foundation Modelscited by 3
- 2026EEG-FM-Audit: A Systematic Evaluation and Analysis Pipeline for EEG Foundation Modelscited by 2
- 2026Cross-Cohort Spectral-Temporal Dissociation in Frozen EEG Foundation-Model Representationscited by 1
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Citing papers per year: 2026: 3.
3 papers.
- 2026Technological Advances in Detecting and Managing Cognitive Impairment in Older Adults: Trends, Challenges, and Future Directionscited by 0
- 2026Matched-Input Estimates Differ in Sign Across Architectures: Auditing EEG Foundation Models on Motor Imagerycited by 0
- 2026Representational and Functional Robustness to Electrode Montages in EEG Foundation Modelscited by 0
- 2026Representational and Functional Robustness to Electrode Montages in EEG Foundation Models28 Sep 2026
- 2026Matched-Input Estimates Differ in Sign Across Architectures: Auditing EEG Foundation Models on Motor Imagery20 Sep 2026
- 2026Technological Advances in Detecting and Managing Cognitive Impairment in Older Adults: Trends, Challenges, and Future Directions30 Jul 2026