TopoMamba: Topology-Aware Scanning and Fusion for Segmenting Heterogeneous Medical Visual Media
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Abstract (arXiv)
Visual state-space models (SSMs) have shown strong potential for medical image segmentation, yet their effectiveness is often limited by two practical issues: axis-biased scan ordering weakens the modeling of oblique and curved structures, and naive multi-branch fusion tends to amplify redundant responses. We present TopoMamba, a topology-aware scan-and-fuse framework for segmenting heterogeneous medical visual media. The method combines a diagonal/anti-diagonal TopoA-Scan branch with the standard Cross-Scan branch to provide complementary structural priors, and introduces ScanCache, a device-aware caching mechanism that amortizes explicit scan-index construction across recurring resolutions. To fuse heterogeneous scan features efficiently, we further propose a lightweight HSIC Gate that regulates branch interaction using a dependence-aware scalar gating rule. We also instantiate a volumetric TopoMamba-3D for practical 3D clinical segmentation. Experiments on Synapse CT, ISIC 2017 dermoscopy, and CVC-ClinicDB endoscopy show that TopoMamba consistently improves segmentation quality over strong CNN, Transformer, and SSM baselines, with particularly clear gains on thin or curved targets such as the pancreas and gallbladder, while maintaining favorable deployment efficiency under dynamic input resolutions. These results suggest that topology-aware scan ordering and lightweight dependence-aware fusion form an effective and practical design for medical multimedia segmentation. The code will be made publicly available.
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References · 31
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- 2016Temporal Ensembling for Semi-Supervised Learningcited by 1,054
- 2024Vision Mamba: Efficient Visual Representation Learning with Bidirectional State Space Modelcited by 1,051
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19 more
- 2021Self-Supervised Pre-Training of Swin Transformers for 3D Medical Image Analysiscited by 418
- 2024U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentationcited by 412
- 2020Axial-DeepLab: Stand-Alone Axial-Attention for Panoptic Segmentationcited by 326
- 2024VM-UNet: Vision Mamba UNet for Medical Image Segmentationcited by 286
- 2022MedSegDiff: Medical Image Segmentation with Diffusion Probabilistic Modelcited by 180
- 2024Swin-UMamba: Mamba-based UNet with ImageNet-based pretrainingcited by 179
- 2022Learning 3D Representations from 2D Pre-trained Models via Image-to-Point Masked Autoencoderscited by 143
- 2024PlainMamba: Improving Non-Hierarchical Mamba in Visual Recognitioncited by 141
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- 2024RSMamba: Remote Sensing Image Classification with State Space Modelcited by 95
- 2024ZigMa: A DiT-style Zigzag Mamba Diffusion Modelcited by 84
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- 2024Unleashing the Potential of SAM for Medical Adaptation via Hierarchical Decodingcited by 48
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- 2023Topology-Aware Focal Loss for 3D Image Segmentationcited by 12
- 2024Rotate to Scan: UNet-like Mamba with Triplet SSM Module for Medical Image Segmentationcited by 12
- 2022Convolutional Fine-Grained Classification with Self-Supervised Target Relation Regularizationcited by 5
- 2025Topology-Aware Wavelet Mamba for Airway Structure Segmentation in Postoperative Recurrent Nasopharyngeal Carcinoma CT Scanscited by 1
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- 2026DAMamba-UNet3D: A Parameter-Efficient Mamba State Space U-Net with Dynamic Adaptive Scan for 3D Medical Image Segmentation
- 2025A Comprehensive Analysis of Mamba for 3D Volumetric Medical Image Segmentation
- 2026TopoCL: Topological Contrastive Learning for Medical Imaging
- 2025MambaCAFU: Hybrid Multi-Scale and Multi-Attention Model with Mamba-Based Fusion for Medical Image Segmentation
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- 2026A Hybrid Mamba-SAM Architecture for Efficient 3D Medical Image Segmentation