Step-by-Step Causality: Transparent Causal Discovery with Multi-Agent Tree-Query and Adversarial Confidence Estimation
On the map: LLM agents and tool use → Medical and scientific domain agents
Abstract (arXiv)
Causal discovery aims to recover ``what causes what'', but classical constraint-based methods (e.g., PC, FCI) suffer from error propagation, and recent LLM-based causal oracles often behave as opaque, confidence-free black boxes. This paper introduces Tree-Query, a tree-structured, multi-expert LLM framework that reduces pairwise causal discovery to a short sequence of queries about backdoor paths, (in)dependence, latent confounding, and causal direction, yielding interpretable judgments with robustness-aware confidence scores. Theoretical guarantees are provided for asymptotic identifiability of four pairwise relations. On data-free benchmarks derived from Mooij et al. and UCI causal graphs, Tree-Query improves structural metrics over direct LLM baselines, and a diet--weight case study illustrates confounder screening and stable, high-confidence causal conclusions. Tree-Query thus offers a principled way to obtain data-free causal priors from LLMs that can complement downstream data-driven causal discovery. Code is available at https://anonymous.4open.science/r/Repo-9B3E-4F96.
Key facts. No citing papers in the map yet (data through 14 Oct 2026). Placed in Medical and scientific domain agents, one of 16 directions in LLM agents and tool use. Builds on 15 of its 22 references that are in the map. First posted on arXiv 15 Jan 2026.
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- 2024Efficient Causal Graph Discovery Using Large Language Modelscited by 53
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- 2024Causal Graph Discovery with Retrieval-Augmented Generation based Large Language Modelscited by 16
- 2024Large Language Models for Constrained-Based Causal Discoverycited by 15
- 2016Estimating and Controlling the False Discovery Rate for the PC Algorithm Using Edge-Specific P-Valuescited by 8
- 2021Causal Structural Learning Via Local Graphscited by 7
- 2025Uncovering Bias Paths with LLM-guided Causal Discovery: An Active Learning and Dynamic Scoring Approachcited by 3
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