L^2M^3OF: A Large Language Multimodal Model for Metal-Organic Frameworks
On the map: LLM reasoning → Clinical and biomedical applications
Abstract (arXiv)
Large language models have demonstrated remarkable reasoning capabilities across diverse natural language tasks. However, comparable breakthroughs in scientific discovery are more limited, because understanding complex physical phenomena demands multifaceted representations far beyond language alone. A compelling example is the design of functional materials such as MOFs-critical for a range of impactful applications like carbon capture and hydrogen storage. Navigating their vast and intricate design space in language-based representations interpretable by LLMs is challenging due to the numerous possible three-dimensional atomic arrangements and strict reticular rules of coordination geometry and topology. Despite promising early results in LLM-assisted discovery for simpler materials systems, MOF design remains heavily reliant on tacit human expertise rarely codified in textual information alone. To overcome this barrier, we introduce L2M3OF, the first multimodal LLM for MOFs. L2M3OF integrates crystal representation learning with language understanding to process structural, textual, and knowledge modalities jointly. L2M3OF employs a pre-trained crystal encoder with a lightweight projection layer to compress structural information into a token space, enabling efficient alignment with language instructions. To facilitate training and evaluation, we curate a structure-property-knowledge database of crystalline materials and benchmark L2M3OF against state-of-the-art closed-source LLMs such as GPT-5, Gemini-2.5-Pro and DeepSeek-R1. Experiments show that L2M3OF outperforms leading text-based closed-source LLMs in property prediction and knowledge generation tasks, despite using far fewer parameters. These results highlight the importance of multimodal approaches for porous material understanding and establish L2M3OF as a foundation for next-generation AI systems in materials discovery.
Key facts. Cited by 1 paper in the map (data through 7 Oct 2026). Placed in Clinical and biomedical applications, one of 17 directions in LLM reasoning. Builds on 14 of its 48 references that are in the map. First posted on arXiv 23 Oct 2025.
Builds on
14 of 48 references.
References · 14
- 2025DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learningcited by 6,146
- 2025Gemini 2.5: Pushing the Frontier with Advanced Reasoning, Multimodality, Long Context, and Next Generation Agentic Capabilitiescited by 3,655
- 2023Large Language Models are not Fair Evaluatorscited by 1,050
- 2024Probing the limitations of multimodal language models for chemistry and materials researchcited by 31
- 2022Physics Guided Deep Learning for Generative Design of Crystal Materials with Symmetry Constraintscited by 30
- 2022Integration of Pre-trained Protein Language Models into Geometric Deep Learning Networkscited by 14
- 2025Invariant Tokenization of Crystalline Materials for Language Model Enabled Generationcited by 12
- 2025MOFGPT: Generative Design of Metal-Organic Frameworks using Language Modelscited by 11
- 2024Less can be more for predicting properties with large language modelscited by 10
- 2025The Rise of Generative AI for Metal-Organic Framework Design and Synthesiscited by 6
- 2025deCIFer: Crystal Structure Prediction from Powder Diffraction Data using Autoregressive Language Modelscited by 5
- 2025CLOUD: A Scalable and Physics-Informed Foundation Model for Crystal Representation Learningcited by 3
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- 2026Enhancing Spatial Reasoning in Large Language Models for Metal-Organic Frameworks Structure Prediction
- 2026ReadMOF: Structure-Free Semantic Embeddings from Systematic MOF Nomenclature for Machine Learning
- 2024Foundational Large Language Models for Materials Research
- 2026Interpretable Inverse Design of Metal-Organic Frameworks with Large Language Model Agents
- 2026An LLM agent for end-to-end computational materials discovery
- 2025Reshaping MOFs text mining with a dynamic multi-agents framework of large language model
- 2025Building-Block Aware Generative Modeling for 3D Crystals of Metal Organic Frameworks
- 2026CrystalReasoner: Reasoning and RL for Property-Conditioned Crystal Structure Generation