Estimating Clinical Lab Test Result Trajectories from PPG using Physiological Foundation Model and Patient-Aware State Space Model -- a UNIPHY+ Approach
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Abstract (arXiv)
Clinical laboratory tests provide essential biochemical measurements for diagnosis and treatment, but are limited by intermittent and invasive sampling. In contrast, photoplethysmogram (PPG) is a non-invasive, continuously recorded signal in intensive care units (ICUs) that reflects cardiovascular dynamics and can serve as a proxy for latent physiological changes. We propose UNIPHY+Lab, a framework that combines a large-scale PPG foundation model for local waveform encoding with a patient-aware Mamba model for long-range temporal modeling. Our architecture addresses three challenges: (1) capturing extended temporal trends in laboratory values, (2) accounting for patient-specific baseline variation via FiLM-modulated initial states, and (3) performing multi-task estimation for interrelated biomarkers. We evaluate our method on the two ICU datasets for predicting the five key laboratory tests. The results show substantial improvements over the LSTM and carry-forward baselines in MAE, RMSE, and R2 among most of the estimation targets. This work demonstrates the feasibility of continuous, personalized lab value estimation from routine PPG monitoring, offering a pathway toward non-invasive biochemical surveillance in critical care.
Key facts. Cited by 2 papers in the map (data through 14 Oct 2026). Builds on 13 of its 26 references that are in the map. First posted on arXiv 19 Sep 2025.
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13 of 26 references.
References · 13
- 2023Mamba: Linear-Time Sequence Modeling with Selective State Spacescited by 4,718
- 2017FiLM: Visual Reasoning with a General Conditioning Layercited by 2,333
- 2018Auxiliary Tasks in Multi-task Learningcited by 108
- 2023Large-scale Training of Foundation Models for Wearable Biosignalscited by 95
- 2024PaPaGei: Open Foundation Models for Optical Physiological Signalscited by 69
- 2025Pulse-PPG: An Open-Source Field-Trained PPG Foundation Model for Wearable Applications Across Lab and Field Settingscited by 37
- 2022FiLM-Ensemble: Probabilistic Deep Learning via Feature-wise Linear Modulationcited by 24
- 2025Understanding and Improving Length Generalization in Recurrent Modelscited by 23
- 2025GPT-PPG: A GPT-based Foundation Model for Photoplethysmography Signalscited by 15
- 2024A Scoping Review of Deep Learning Methods for Photoplethysmography Datacited by 11
- 2021A Deep Learning Approach to Predict Blood Pressure from PPG Signalscited by 6
- 2025Lyra: An Efficient and Expressive Subquadratic Architecture for Modeling Biological Sequencescited by 2
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Citing papers per year: 2025: 2.
2 papers.
- 2025Generalist vs Specialist Time Series Foundation Models: Investigating Potential Emergent Behaviors in Assessing Human Health Using PPG Signals16 Oct 2025
- 2025Wav2Arrest 2.0: Long-Horizon Cardiac Arrest Prediction with Time-to-Event Modeling, Identity-Invariance, and Pseudo-Lab Alignment25 Sep 2025
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- 2026PPG-LM: A Photoplethysmography-Language Model with Multi-Level Clinical Alignment
- 2023PPG-to-ECG Signal Translation for Continuous Atrial Fibrillation Detection via Attention-based Deep State-Space Modeling
- 2025QualityFM: a Multimodal Physiological Signal Foundation Model with Self-Distillation for Signal Quality Challenges in Critically Ill Patients
- 2024Constraint Latent Space Matters: An Anti-anomalous Waveform Transformation Solution from Photoplethysmography to Arterial Blood Pressure
- 2026PENGUIN: General Vital Sign Reconstruction from PPG with Flow Matching State Space Model
- 2026Non-Contact Physiological Monitoring in Pediatric Intensive Care Units via Adaptive Masking and Self-Supervised Learning
- 2024PhysMamba: Efficient Remote Physiological Measurement with SlowFast Temporal Difference Mamba
- 2025M3PD Dataset: Dual-view Photoplethysmography (PPG) Using Front-and-rear Cameras of Smartphones in Lab and Clinical Settings