mlsanityData to 14 Oct 2026

Clifford Group Equivariant Diffusion Models for 3D Molecular Generation

arXiv 2504.15773 ↗First posted 22 Apr 2025cs.LG cs.AIcited by 3

On the map: Diffusion models → Flow matching, time series and science

Abstract (arXiv)

This paper explores leveraging the Clifford algebra's expressive power for E(n)-equivariant diffusion models. We utilize the geometric products between Clifford multivectors and the rich geometric information encoded in Clifford subspaces in Clifford Diffusion Models (CDMs). We extend the diffusion process beyond just Clifford one-vectors to incorporate all higher-grade multivector subspaces. The data is embedded in grade-k subspaces, allowing us to apply latent diffusion across complete multivectors. This enables CDMs to capture the joint distribution across different subspaces of the algebra, incorporating richer geometric information through higher-order features. We provide empirical results for unconditional molecular generation on the QM9 dataset, showing that CDMs provide a promising avenue for generative modeling.

Key facts. Cited by 3 papers in the map (data through 14 Oct 2026). Placed in Flow matching, time series and science, one of 14 directions in Diffusion models. Builds on 25 of its 31 references that are in the map. First posted on arXiv 22 Apr 2025.

Builds on

25 of 31 references.

Closest ancestors · 9

Same direction, newest first

  1. 2024Mixed Continuous and Categorical Flow Matching for 3D De Novo Molecule Generation30 Apr
  2. 2023Equivariant Flow Matching with Hybrid Probability Transport12 Dec
  3. 2023SE(3)-Stochastic Flow Matching for Protein Backbone Generation3 Oct
  4. 2023Learning Joint 2D & 3D Diffusion Models for Complete Molecule Generation21 May
  5. 2023Geometric Latent Diffusion Models for 3D Molecule Generation2 May
  6. 2023MiDi: Mixed Graph and 3D Denoising Diffusion for Molecule Generation17 Feb
  7. 2023SE(3) diffusion model with application to protein backbone generation5 Feb
  8. 2022Equivariant Diffusion for Molecule Generation in 3D31 Mar
  9. 2022GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation6 Mar

Other references · 16

  1. 2020Denoising Diffusion Probabilistic Modelscited by 21,076
  2. 2022Elucidating the Design Space of Diffusion-Based Generative Modelscited by 3,045
  3. 2021E(n) Equivariant Graph Neural Networkscited by 965
  4. 2018GraphVAE: Towards Generation of Small Graphs Using Variational Autoencoderscited by 383
  5. 2021Geometric and Physical Quantities Improve E(3) Equivariant Message Passingcited by 228
  6. 2019Symmetry-adapted generation of 3d point sets for the targeted discovery of moleculescited by 172
  7. 2021E(n) Equivariant Normalizing Flowscited by 165
  8. 2020Symmetry-Aware Actor-Critic for 3D Molecular Designcited by 55
  9. 2023Geometric Algebra Transformercited by 48
  10. 2023MUDiff: Unified Diffusion for Complete Molecule Generationcited by 42
  11. 2023Fast, Expressive SE(n) Equivariant Networks through Weight-Sharing in Position-Orientation Spacecited by 41
  12. 2023Geometric Clifford Algebra Networkscited by 38
4 more
  1. 2024Lorentz-Equivariant Geometric Algebra Transformers for High-Energy Physicscited by 38
  2. 2024Clifford-Steerable Convolutional Neural Networkscited by 25
  3. 2024Clifford Group Equivariant Simplicial Message Passing Networkscited by 22
  4. 2025Probing Equivariance and Symmetry Breaking in Convolutional Networkscited by 12

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Cited by year (2026 to 14 Oct)

Citing papers per year: 2025: 2; 2026: 1.

3 papers.

Similar, not cited

Close in wording, no citation either way

  1. 2026Quotient-Space Diffusion Models
  2. 2025Equivariant Neural Diffusion for Molecule Generation
  3. 2025Scalable Non-Equivariant 3D Molecule Generation via Rotational Alignment
  4. 2023Navigating the Design Space of Equivariant Diffusion-Based Generative Models for De Novo 3D Molecule Generation
  5. 2024Equivariant Blurring Diffusion for Hierarchical Molecular Conformer Generation
  6. 2026Rethinking Diffusion Models with Symmetries through Canonicalization with Applications to Molecular Graph Generation
  7. 2025Frame-based Equivariant Diffusion Models for 3D Molecular Generation
  8. 2025Diffusion Generative Modeling on Lie Group Representations