Zero Shot Health Trajectory Prediction Using Transformer
Not on the map. Why?
Abstract (arXiv)
Integrating modern machine learning and clinical decision-making has great promise for mitigating healthcare's increasing cost and complexity. We introduce the Enhanced Transformer for Health Outcome Simulation (ETHOS), a novel application of the transformer deep-learning architecture for analyzing high-dimensional, heterogeneous, and episodic health data. ETHOS is trained using Patient Health Timelines (PHTs)-detailed, tokenized records of health events-to predict future health trajectories, leveraging a zero-shot learning approach. ETHOS represents a significant advancement in foundation model development for healthcare analytics, eliminating the need for labeled data and model fine-tuning. Its ability to simulate various treatment pathways and consider patient-specific factors positions ETHOS as a tool for care optimization and addressing biases in healthcare delivery. Future developments will expand ETHOS' capabilities to incorporate a wider range of data types and data sources. Our work demonstrates a pathway toward accelerated AI development and deployment in healthcare.
Key facts. Cited by 77 papers in the map (data through 14 Oct 2026). Builds on 9 of its 38 references that are in the map. First posted on arXiv 30 Jul 2024.
Builds on
9 of 38 references.
References · 9
- 2017Attention Is All You Needcited by 60,361
- 2020Language Models are Few-Shot Learnerscited by 32,419
- 2016XGBoost: A Scalable Tree Boosting Systemcited by 5,166
- 2019A Multiscale Visualization of Attention in the Transformer Modelcited by 292
- 2020Language Models Are An Effective Patient Representation Learning Technique For Electronic Health Record Datacited by 87
- 2023Event Stream GPT: A Data Pre-processing and Modeling Library for Generative, Pre-trained Transformers over Continuous-time Sequences of Complex Eventscited by 46
- 2023DRG-LLaMA : Tuning LLaMA Model to Predict Diagnosis-related Group for Hospitalized Patientscited by 30
- 2023Using Sequences of Life-events to Predict Human Livescited by 27
- 2022Multimodal spatiotemporal graph neural networks for improved prediction of 30-day all-cause hospital readmissioncited by 14
Built on by
Citing papers per year: 2024: 3; 2025: 31; 2026: 43.
77 papers.
Sort:
By area:
- 2024Context Clues: Evaluating Long Context Models for Clinical Prediction Tasks on EHRscited by 39
- 2025Foundation Model of Electronic Medical Records for Adaptive Risk Estimationcited by 19
- 2025EHR-R1: A Reasoning-Enhanced Foundational Language Model for Electronic Health Record Analysiscited by 18
- 2025Multimodal Medical Code Tokenizercited by 14
- 2025Exploring Scaling Laws for EHR Foundation Modelscited by 12
- 2025Foundation models for electronic health records: representation dynamics and transferabilitycited by 11
- 2025FoMoH: A clinically meaningful foundation model evaluation for structured electronic health recordscited by 6
- 2026Tokenization Tradeoffs in Structured EHR Foundation Modelscited by 6
- 2025LabTOP: A Unified Model for Lab Test Outcome Prediction on Electronic Health Recordscited by 5
- 2025An Investigation of Memorization Risk in Healthcare Foundation Modelscited by 5
- 2026One Loss to Rule Them All: Marked Time-to-Event for Structured EHR Foundation Modelscited by 5
- 2025Generating Clinically Realistic EHR Data via a Hierarchy- and Semantics-Guided Transformercited by 4
38 more
- 2025MedRep: Medical Concept Representation for General Electronic Health Record Foundation Modelscited by 4
- 2025CEHR-XGPT: A Scalable Multi-Task Foundation Model for Electronic Health Recordscited by 4
- 2025Cross-Representation Benchmarking in Time-Series Electronic Health Records for Clinical Outcome Predictioncited by 4
- 2026Semantic Self-Distillation for Language Model Uncertaintycited by 4
- 2026Retrieval-aligned Tabular Foundation Models Enable Robust Clinical Risk Prediction in Electronic Health Records Under Real-world Constraintscited by 4
- 2024Interpretable Next-token Prediction via the Generalized Induction Headcited by 3
- 2025EHR2Path: Comprehensive Pathway-Level Modeling of Longitudinal Patient Trajectories from Multimodal Electronic Health Recordscited by 3
- 2025Foundation Models for Clinical Records at Health System Scalecited by 3
- 2025Quantifying surprise in clinical care: Detecting highly informative events in electronic health records with foundation modelscited by 3
- 2026The Taxonomies, Training, and Applications of Event Stream Modelling for Electronic Health Recordscited by 3
- 2026Scaling Recurrence-aware Foundation Models for Clinical Records via Next-Visit Predictioncited by 3
- 2025Representation Learning of Lab Values via Masked AutoEncoderscited by 2
- 2025One Patient, Many Contexts: Scaling Medical AI with Contextual Intelligencecited by 2
- 2026Efficient Generative Prediction for EHR Foundation Models: The SCOPE and REACH Estimatorscited by 2
- 2026LLMs can construct powerful representations and streamline sample-efficient supervised learningcited by 2
- 2026From Token to Token Pair: Efficient Prompt Compression for Large Language Models in Clinical Predictioncited by 2
- 2026PORTER: Language-Grounded Event Representations for Portable Structured EHR Foundation Modelscited by 2
- 2026EHR-MPC: Inference-Time Control for Sepsis Treatment with Generative Patient Digital Twinscited by 2
- 2024TrajGPT: Irregular Time-Series Representation Learning for Health Trajectory Analysiscited by 1
- 2025Interpretable Hybrid-Rule Temporal Point Processescited by 1
- 2025multivariateGPT: a decoder-only transformer for multivariate categorical and numeric datacited by 1
- 2025Federated Timeline Synthesis: Scalable and Private Methodology For Model Training and Deploymentcited by 1
- 2025Limits of Generative Pre-Training in Structured EMR Trajectories with Irregular Samplingcited by 1
- 2025Integrating Genomics into Multimodal EHR Foundation Modelscited by 1
- 2026From Statistical Fidelity to Clinical Consistency: Scalable Generation and Auditing of Synthetic Patient Trajectoriescited by 1
- 2026Handling and Interpreting Missing Modalities in Patient Clinical Trajectories via Autoregressive Sequence Modelingcited by 1
- 2026Foundation Models to Unlock Real-World Evidence from Nationwide Medical Claimscited by 1
- 2026Protecting patient privacy in clinical foundation models: Technical and legal perspectivescited by 1
- 2025Deep Causal Behavioral Policy Learning: Applications to Healthcarecited by 0
- 2025Scaling Electronic Health Record Foundation Models for Population Health Managementcited by 0
- 2025The NordDRG AI Benchmark for Large Language Modelscited by 0
- 2025PRISM-Consult: A Panel-of-Experts Architecture for Clinician-Aligned Diagnosiscited by 0
- 2025Stable Prediction of Adverse Events in Medical Time-Series Datacited by 0
- 2025Chronic Kidney Disease Prognosis Prediction Using Transformercited by 0
- 2025Toward Scalable Early Cancer Detection: Evaluating EHR-Based Predictive Models Against Traditional Screening Criteriacited by 0
- 2025PULSE-ICU: A Pretrained Unified Long-Sequence Encoder for Multi-task Prediction in Intensive Care Unitscited by 0
- 2025Coefficient of Variation Masking: A Volatility-Aware Strategy for EHR Foundation Modelscited by 0
- 2026NEST: Nested Event Stream Transformer for Sequences of Multisetscited by 0
50 most cited of 77 All 77 (JSON)
- 2026Sequence Composition in EHR Foundation Model Pretraining12 Oct 2026
- 2026GLoC-EHR: Evidence-Cited Clinical Reasoning over Global Context and Local EHR Events1 Oct 2026
- 2026Learning Continuous Patient Trajectories from Electronic Health Records28 Sep 2026
- 2026A Patient World Model for Early Forecasting of Digital Health Campaign Outcomes: Capabilities and Limits20 Sep 2026
- 2026EHR2Trace: Auditable EHR Data Infrastructure for Patient World Models and Clinical Agents18 Sep 2026
- 2026Intervention Granularity Matters: Coherent Treatment Bundles in Counterfactual Simulation with Clinical World Models18 Sep 2026
- 2026What Next-Event Accuracy Cannot See: Closed-Loop Evaluation of Emergency Department Trajectory Simulators10 Sep 2026
- 2026Reinforcement Learning over Patient Trajectories for Clinical Reasoning in EHR Foundation Models10 Sep 2026
- 2026A Multimodal Foundation Model for Longitudinal Patient Representation and Scalable Insight Generation in Oncology25 Aug 2026
- 2026Structured Evidence Routing for Incident Risk Prediction from Multimodal Longitudinal EHRs24 Aug 2026
- 2026Foresight-England: Development of a National-Scale Generative AI Model of Electronic Health Records for Medical Event Prediction across the COVID-19 Pandemic17 Aug 2026
- 2026Protecting patient privacy in clinical foundation models: Technical and legal perspectives7 Aug 2026
38 more
- 2026Federated generative event models for tokenized electronic health records3 Aug 2026
- 2026Autoregressive EHR Foundation Models with Multimodal Inputs24 Jul 2026
- 2026Pretraining EHR Foundation Models with Patient-Aware Sampling24 Jul 2026
- 2026LLM4EHR: Aligning Clinical Time Series with Medical Event Sequences via Large Language Models16 Jul 2026
- 2026EHR-MPC: Inference-Time Control for Sepsis Treatment with Generative Patient Digital Twins7 Jul 2026
- 2026X-FEMR: A Token-level Explainable Approach for Electronic Health Records Foundation Models using Transformer-based Models7 Jul 2026
- 2026How Should Transformers Encode Numeric Values in Electronic Health Records?1 Jul 2026
- 2026PORTER: Language-Grounded Event Representations for Portable Structured EHR Foundation Models23 Jun 2026
- 2026Hierarchical Modeling of ICD Codes in EHR Foundation Models13 Jun 2026
- 2026LifeSentence: Language models can encode human life course trajectories from longitudinal panel data14 May 2026
- 2026DT-Transformer: A Foundation Model for Disease Trajectory Prediction on a Real-world Health System14 May 2026
- 2026Conditional Attribute Estimation with Autoregressive Sequence Models13 May 2026
- 2026From Token to Token Pair: Efficient Prompt Compression for Large Language Models in Clinical Prediction12 May 2026
- 2026TraXion: Rethinking Pre-training Frameworks for Mobility and Beyond7 May 2026
- 2026Foundation Models to Unlock Real-World Evidence from Nationwide Medical Claims4 May 2026
- 2026Handling and Interpreting Missing Modalities in Patient Clinical Trajectories via Autoregressive Sequence Modeling20 Apr 2026
- 2026Representation Before Training: A Practical Benchmark for Generative Medical Event Model Tokenization18 Apr 2026
- 2026Retrieval-aligned Tabular Foundation Models Enable Robust Clinical Risk Prediction in Electronic Health Records Under Real-world Constraints2 Apr 2026
- 2026Scaling Recurrence-aware Foundation Models for Clinical Records via Next-Visit Prediction25 Mar 2026
- 2026The Taxonomies, Training, and Applications of Event Stream Modelling for Electronic Health Records14 Mar 2026
- 2026LLMs can construct powerful representations and streamline sample-efficient supervised learning12 Mar 2026
- 2026EveryQuery: A Promptable Foundation Model for Clinical Prediction Tasks over Electronic Health Records9 Mar 2026
- 2026From Statistical Fidelity to Clinical Consistency: Scalable Generation and Auditing of Synthetic Patient Trajectories6 Mar 2026
- 2026Tokenization Tradeoffs in Structured EHR Foundation Models3 Mar 2026
- 2026Patient foundation model for risk stratification in low-risk overweight patients9 Feb 2026
- 2026Semantic Self-Distillation for Language Model Uncertainty4 Feb 2026
- 2026Efficient Generative Prediction for EHR Foundation Models: The SCOPE and REACH Estimators3 Feb 2026
- 2026One Loss to Rule Them All: Marked Time-to-Event for Structured EHR Foundation Models31 Jan 2026
- 2026NEST: Nested Event Stream Transformer for Sequences of Multisets31 Jan 2026
- 2026Generating Counterfactual Patient Timelines from Real-World Data24 Jan 2026
- 2026Building Safe and Deployable Clinical Natural Language Processing under Temporal Leakage Constraints24 Jan 2026
- 2025Coefficient of Variation Masking: A Volatility-Aware Strategy for EHR Foundation Models4 Dec 2025
- 2025PULSE-ICU: A Pretrained Unified Long-Sequence Encoder for Multi-task Prediction in Intensive Care Units27 Nov 2025
- 2025Toward Scalable Early Cancer Detection: Evaluating EHR-Based Predictive Models Against Traditional Screening Criteria14 Nov 2025
- 2025Chronic Kidney Disease Prognosis Prediction Using Transformer4 Nov 2025
- 2025EHR-R1: A Reasoning-Enhanced Foundational Language Model for Electronic Health Record Analysis29 Oct 2025
- 2025Limits of Generative Pre-Training in Structured EMR Trajectories with Irregular Sampling27 Oct 2025
- 2025Integrating Genomics into Multimodal EHR Foundation Models24 Oct 2025
50 newest of 77 All 77 (JSON)
- 2025Foundation Model of Electronic Medical Records for Adaptive Risk Estimationcited by 19
- 2025Multimodal Medical Code Tokenizercited by 14
- 2025Exploring Scaling Laws for EHR Foundation Modelscited by 12
- 2025Foundation models for electronic health records: representation dynamics and transferabilitycited by 11
- 2025FoMoH: A clinically meaningful foundation model evaluation for structured electronic health recordscited by 6
- 2026Tokenization Tradeoffs in Structured EHR Foundation Modelscited by 6
- 2025LabTOP: A Unified Model for Lab Test Outcome Prediction on Electronic Health Recordscited by 5
- 2025An Investigation of Memorization Risk in Healthcare Foundation Modelscited by 5
- 2026One Loss to Rule Them All: Marked Time-to-Event for Structured EHR Foundation Modelscited by 5
- 2025Generating Clinically Realistic EHR Data via a Hierarchy- and Semantics-Guided Transformercited by 4
- 2025MedRep: Medical Concept Representation for General Electronic Health Record Foundation Modelscited by 4
- 2025CEHR-XGPT: A Scalable Multi-Task Foundation Model for Electronic Health Recordscited by 4
12 most cited of 67 All 67 (JSON)
- 2026Sequence Composition in EHR Foundation Model Pretraining12 Oct 2026
- 2026A Patient World Model for Early Forecasting of Digital Health Campaign Outcomes: Capabilities and Limits20 Sep 2026
- 2026What Next-Event Accuracy Cannot See: Closed-Loop Evaluation of Emergency Department Trajectory Simulators10 Sep 2026
- 2026Reinforcement Learning over Patient Trajectories for Clinical Reasoning in EHR Foundation Models10 Sep 2026
- 2026A Multimodal Foundation Model for Longitudinal Patient Representation and Scalable Insight Generation in Oncology25 Aug 2026
- 2026Structured Evidence Routing for Incident Risk Prediction from Multimodal Longitudinal EHRs24 Aug 2026
- 2026Foresight-England: Development of a National-Scale Generative AI Model of Electronic Health Records for Medical Event Prediction across the COVID-19 Pandemic17 Aug 2026
- 2026Protecting patient privacy in clinical foundation models: Technical and legal perspectives7 Aug 2026
- 2026Federated generative event models for tokenized electronic health records3 Aug 2026
- 2026Autoregressive EHR Foundation Models with Multimodal Inputs24 Jul 2026
- 2026Pretraining EHR Foundation Models with Patient-Aware Sampling24 Jul 2026
- 2026LLM4EHR: Aligning Clinical Time Series with Medical Event Sequences via Large Language Models16 Jul 2026
12 newest of 67 All 67 (JSON)