Large Language Models for Scientific Synthesis, Inference and Explanation
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Abstract (arXiv)
Large language models are a form of artificial intelligence systems whose primary knowledge consists of the statistical patterns, semantic relationships, and syntactical structures of language1. Despite their limited forms of "knowledge", these systems are adept at numerous complex tasks including creative writing, storytelling, translation, question-answering, summarization, and computer code generation. However, they have yet to demonstrate advanced applications in natural science. Here we show how large language models can perform scientific synthesis, inference, and explanation. We present a method for using general-purpose large language models to make inferences from scientific datasets of the form usually associated with special-purpose machine learning algorithms. We show that the large language model can augment this "knowledge" by synthesizing from the scientific literature. When a conventional machine learning system is augmented with this synthesized and inferred knowledge it can outperform the current state of the art across a range of benchmark tasks for predicting molecular properties. This approach has the further advantage that the large language model can explain the machine learning system's predictions. We anticipate that our framework will open new avenues for AI to accelerate the pace of scientific discovery.
Key facts. Cited by 39 papers in the map (data through 14 Oct 2026). Builds on 16 of its 39 references that are in the map. First posted on arXiv 12 Oct 2023.
Builds on
16 of 39 references.
References · 16
- 2020Language Models are Few-Shot Learnerscited by 32,419
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- 2023Code Llama: Open Foundation Models for Codecited by 2,139
- 2019BioBERT: a pre-trained biomedical language representation model for biomedical text miningcited by 1,947
- 2022Large Language Models Encode Clinical Knowledgecited by 1,830
- 2019SciBERT: A Pretrained Language Model for Scientific Textcited by 1,414
- 2022Least-to-Most Prompting Enables Complex Reasoning in Large Language Modelscited by 1,407
- 2020Graph Contrastive Learning with Augmentationscited by 1,208
- 2017MoleculeNet: A Benchmark for Molecular Machine Learningcited by 1,051
- 2019Strategies for Pre-training Graph Neural Networkscited by 971
- 2022Galactica: A Large Language Model for Sciencecited by 744
4 more
- 2021Pre-training Molecular Graph Representation with 3D Geometrycited by 248
- 20213D Infomax improves GNNs for Molecular Property Predictioncited by 146
- 2019SMILES Transformer: Pre-trained Molecular Fingerprint for Low Data Drug Discoverycited by 90
- 2023Can ChatGPT be used to generate scientific hypotheses?cited by 21
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Citing papers per year: 2023: 2; 2024: 17; 2025: 16; 2026: 4.
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- 2025Accelerating Reinforcement Learning Algorithms Convergence using Pre-trained Large Language Models as Tutors With Advice Reusing10 Sep 2025
- 2025Mimicking the Physicist's Eye:A VLM-centric Approach for Physics Formula Discovery24 Aug 2025
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- 2025Generative AI in Knowledge Work: Design Implications for Data Navigation and Decision-Making24 Mar 2025
- 2025From Hypothesis to Publication: A Comprehensive Survey of AI-Driven Research Support Systems3 Mar 2025
- 2025Generating Computational Cognitive Models using Large Language Models2 Feb 2025
- 2025Synthetic Artifact Auditing: Tracing LLM-Generated Synthetic Data Usage in Downstream Applications2 Feb 2025
- 2025Self-reflecting Large Language Models: A Hegelian Dialectical Approach24 Jan 2025
- 2024Generative Adversarial Reviews: When LLMs Become the Critic9 Dec 2024
- 2024Causal Representation Learning from Multimodal Biomedical Observations10 Nov 2024
- 2024Many Heads Are Better Than One: Improved Scientific Idea Generation by A LLM-Based Multi-Agent System12 Oct 2024
- 2024Large Language Models in Drug Discovery and Development: From Disease Mechanisms to Clinical Trials6 Sep 2024
- 2024SciLitLLM: How to Adapt LLMs for Scientific Literature Understanding28 Aug 2024
- 2024Leveraging large language models for nano synthesis mechanism explanation: solid foundations or mere conjectures?12 Jul 2024
- 2024Fault Diagnosis in Power Grids with Large Language Model11 Jul 2024
- 2024Building Understandable Messaging for Policy and Evidence Review (BUMPER) with AI27 Jun 2024
- 2024A Review of Large Language Models and Autonomous Agents in Chemistry26 Jun 2024
- 2024ChatGPT as Research Scientist: Probing GPT's Capabilities as a Research Librarian, Research Ethicist, Data Generator and Data Predictor20 Jun 2024
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- 2024LLM-SR: Scientific Equation Discovery via Programming with Large Language Models29 Apr 2024
- 2024SciAssess: Benchmarking LLM Proficiency in Scientific Literature Analysis4 Mar 2024
- 2024ChatCell: Facilitating Single-Cell Analysis with Natural Language13 Feb 2024
- 2024GOODAT: Towards Test-time Graph Out-of-Distribution Detection10 Jan 2024
- 2024Exploring the Frontiers of LLMs in Psychological Applications: A Comprehensive Review3 Jan 2024
- 2023Speculative Exploration on the Concept of Artificial Agents Conducting Autonomous Research6 Dec 2023
- 2023Towards Self-Interpretable Graph-Level Anomaly Detection25 Oct 2023
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- 2024Many Heads Are Better Than One: Improved Scientific Idea Generation by A LLM-Based Multi-Agent Systemcited by 68
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- 2026EvoSci: A Bio-Inspired Multi-Agent Framework for the Evolution of Scientific Discoverycited by 3
- 2026EvoSci: A Bio-Inspired Multi-Agent Framework for the Evolution of Scientific Discovery20 May 2026
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- 2024Many Heads Are Better Than One: Improved Scientific Idea Generation by A LLM-Based Multi-Agent System12 Oct 2024
- 2024A Review of Large Language Models and Autonomous Agents in Chemistry26 Jun 2024
- 2025Normative Conflicts and Shallow AI Alignmentcited by 5
- 2025Normative Conflicts and Shallow AI Alignment5 Jun 2025
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- 2024A Comprehensive Survey of Scientific Large Language Models and Their Applications in Scientific Discoverycited by 96
- 2025From Automation to Autonomy: A Survey on Large Language Models in Scientific Discoverycited by 93
- 2023Towards Self-Interpretable Graph-Level Anomaly Detectioncited by 41
- 2024SciAssess: Benchmarking LLM Proficiency in Scientific Literature Analysiscited by 41
- 2025TreeReview: A Dynamic Tree of Questions Framework for Deep and Efficient LLM-based Scientific Peer Reviewcited by 31
- 2024SciLitLLM: How to Adapt LLMs for Scientific Literature Understandingcited by 29
- 2024Large Language Models in Drug Discovery and Development: From Disease Mechanisms to Clinical Trialscited by 24
- 2024ChatGPT as Research Scientist: Probing GPT's Capabilities as a Research Librarian, Research Ethicist, Data Generator and Data Predictorcited by 21
- 2024Exploring the Frontiers of LLMs in Psychological Applications: A Comprehensive Reviewcited by 17
- 2024GOODAT: Towards Test-time Graph Out-of-Distribution Detectioncited by 17
- 2024Large Language Models Reflect Human Citation Patterns with a Heightened Citation Biascited by 17
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- 2026SCALPEL: Selective Capability Ablation via Low-rank Parameter Editing for Large Language Model Interpretability Analysis12 Jan 2026
- 2025Discovering Heuristics with Large Language Models (LLMs) for Mixed-Integer Programs: Single-Machine Scheduling28 Oct 2025
- 2025LOCA: Logical Chain Augmentation for Scientific Corpus Cleaning24 Sep 2025
- 2025Accelerating Reinforcement Learning Algorithms Convergence using Pre-trained Large Language Models as Tutors With Advice Reusing10 Sep 2025
- 2025Mimicking the Physicist's Eye:A VLM-centric Approach for Physics Formula Discovery24 Aug 2025
- 2025TreeReview: A Dynamic Tree of Questions Framework for Deep and Efficient LLM-based Scientific Peer Review9 Jun 2025
- 2025From Automation to Autonomy: A Survey on Large Language Models in Scientific Discovery19 May 2025
- 2025Synthesized Annotation Guidelines are Knowledge-Lite Boosters for Clinical Information Extraction1 Apr 2025
- 2025Generative AI in Knowledge Work: Design Implications for Data Navigation and Decision-Making24 Mar 2025
- 2025From Hypothesis to Publication: A Comprehensive Survey of AI-Driven Research Support Systems3 Mar 2025
12 newest of 31 All 31 (JSON)