SaGess: Sampling Graph Denoising Diffusion Model for Scalable Graph Generation
On the map: Diffusion models → Flow matching, time series and science
Abstract (arXiv)
Over recent years, denoising diffusion generative models have come to be considered as state-of-the-art methods for synthetic data generation, especially in the case of generating images. These approaches have also proved successful in other applications such as tabular and graph data generation. However, due to computational complexity, to this date, the application of these techniques to graph data has been restricted to small graphs, such as those used in molecular modeling. In this paper, we propose SaGess, a discrete denoising diffusion approach, which is able to generate large real-world networks by augmenting a diffusion model (DiGress) with a generalized divide-and-conquer framework. The algorithm is capable of generating larger graphs by sampling a covering of subgraphs of the initial graph in order to train DiGress. SaGess then constructs a synthetic graph using the subgraphs that have been generated by DiGress. We evaluate the quality of the synthetic data sets against several competitor methods by comparing graph statistics between the original and synthetic samples, as well as evaluating the utility of the synthetic data set produced by using it to train a task-driven model, namely link prediction. In our experiments, SaGess, outperforms most of the one-shot state-of-the-art graph generating methods by a significant factor, both on the graph metrics and on the link prediction task.
Key facts. Cited by 13 papers in the map (data through 14 Oct 2026). Placed in Flow matching, time series and science, one of 14 directions in Diffusion models. Builds on 15 of its 27 references that are in the map. First posted on arXiv 29 Jun 2023.
Builds on
15 of 27 references.
Closest ancestors · 4
Same direction, newest first
- 2022Structure-based Drug Design with Equivariant Diffusion Models24 Oct
- 2022Diffusion Models for Graphs Benefit From Discrete State Spaces4 Oct
- 2022DiGress: Discrete Denoising diffusion for graph generation29 Sep
- 2022GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation6 Mar
Other references · 11
- 2020Denoising Diffusion Probabilistic Modelscited by 21,076
- 2015Deep Unsupervised Learning using Nonequilibrium Thermodynamicscited by 7,058
- 2016Revisiting Semi-Supervised Learning with Graph Embeddingscited by 976
- 2018GraphRNN: Generating Realistic Graphs with Deep Auto-regressive Modelscited by 413
- 2018GraphVAE: Towards Generation of Small Graphs Using Variational Autoencoderscited by 383
- 2019Efficient Graph Generation with Graph Recurrent Attention Networkscited by 234
- 2018NetGAN: Generating Graphs via Random Walkscited by 131
- 2021DECAF: Generating Fair Synthetic Data Using Causally-Aware Generative Networkscited by 109
- 2020A Systematic Survey on Deep Generative Models for Graph Generationcited by 94
- 2016Understanding data augmentation for classification: when to warp?cited by 74
- 2020Deep Graph Generators: A Surveycited by 36
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Citing papers per year: 2023: 2; 2024: 3; 2025: 4; 2026: 4.
13 papers.
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- 2023Sparse Training of Discrete Diffusion Models for Graph Generationcited by 27
- 2024Unifying Generation and Prediction on Graphs with Latent Graph Diffusioncited by 25
- 2024Optimizing OOD Detection in Molecular Graphs: A Novel Approach with Diffusion Modelscited by 22
- 2025Diffusion on Graph: Augmentation of Graph Structure for Node Classificationcited by 4
- 2026Prior-Informed Flow Matching for Graph Reconstructioncited by 4
- 2025Do Graph Diffusion Models Accurately Capture and Generate Substructure Distributions?cited by 3
- 2026Flowette: Flow Matching with Graphette Priors for Graph Generationcited by 3
- 2024Diffusion-based Graph Generative Methodscited by 2
- 2023Leveraging Graph Diffusion Models for Network Refinement Taskscited by 1
- 2026FLAGG: Flexible Autoregressive Graph Generationcited by 1
- 2025Generating Large Semi-Synthetic Graphs of Any Sizecited by 0
- 2025FAROS: Fair Graph Generation via Attribute Switching Mechanismscited by 0
- 2026CoDiffGRN: Rethinking Gene Regulatory Network Inference via the BEELINE-KGC Benchmark and Co-evolutionary Discrete Diffusion14 Jul 2026
- 2026FLAGG: Flexible Autoregressive Graph Generation3 Jun 2026
- 2026Flowette: Flow Matching with Graphette Priors for Graph Generation27 Feb 2026
- 2026Prior-Informed Flow Matching for Graph Reconstruction29 Jan 2026
- 2025FAROS: Fair Graph Generation via Attribute Switching Mechanisms4 Jul 2025
- 2025Generating Large Semi-Synthetic Graphs of Any Size2 Jul 2025
- 2025Diffusion on Graph: Augmentation of Graph Structure for Node Classification16 Mar 2025
- 2025Do Graph Diffusion Models Accurately Capture and Generate Substructure Distributions?4 Feb 2025
- 2024Optimizing OOD Detection in Molecular Graphs: A Novel Approach with Diffusion Models24 Apr 2024
- 2024Unifying Generation and Prediction on Graphs with Latent Graph Diffusion4 Feb 2024
- 2024Diffusion-based Graph Generative Methods28 Jan 2024
- 2023Leveraging Graph Diffusion Models for Network Refinement Tasks29 Nov 2023
1 more
- 2023Sparse Training of Discrete Diffusion Models for Graph Generationcited by 27
- 2024Unifying Generation and Prediction on Graphs with Latent Graph Diffusioncited by 25
- 2024Optimizing OOD Detection in Molecular Graphs: A Novel Approach with Diffusion Modelscited by 22
- 2025Diffusion on Graph: Augmentation of Graph Structure for Node Classificationcited by 4
- 2026Prior-Informed Flow Matching for Graph Reconstructioncited by 4
- 2025Do Graph Diffusion Models Accurately Capture and Generate Substructure Distributions?cited by 3
- 2026Flowette: Flow Matching with Graphette Priors for Graph Generationcited by 3
- 2024Diffusion-based Graph Generative Methodscited by 2
- 2023Leveraging Graph Diffusion Models for Network Refinement Taskscited by 1
- 2025FAROS: Fair Graph Generation via Attribute Switching Mechanismscited by 0
- 2026CoDiffGRN: Rethinking Gene Regulatory Network Inference via the BEELINE-KGC Benchmark and Co-evolutionary Discrete Diffusioncited by 0
- 2026CoDiffGRN: Rethinking Gene Regulatory Network Inference via the BEELINE-KGC Benchmark and Co-evolutionary Discrete Diffusion14 Jul 2026
- 2026Flowette: Flow Matching with Graphette Priors for Graph Generation27 Feb 2026
- 2026Prior-Informed Flow Matching for Graph Reconstruction29 Jan 2026
- 2025FAROS: Fair Graph Generation via Attribute Switching Mechanisms4 Jul 2025
- 2025Diffusion on Graph: Augmentation of Graph Structure for Node Classification16 Mar 2025
- 2025Do Graph Diffusion Models Accurately Capture and Generate Substructure Distributions?4 Feb 2025
- 2024Optimizing OOD Detection in Molecular Graphs: A Novel Approach with Diffusion Models24 Apr 2024
- 2024Unifying Generation and Prediction on Graphs with Latent Graph Diffusion4 Feb 2024
- 2024Diffusion-based Graph Generative Methods28 Jan 2024
- 2023Leveraging Graph Diffusion Models for Network Refinement Tasks29 Nov 2023
- 2023Sparse Training of Discrete Diffusion Models for Graph Generation3 Nov 2023
- 2026FLAGG: Flexible Autoregressive Graph Generationcited by 1
- 2025Generating Large Semi-Synthetic Graphs of Any Sizecited by 0
- 2026FLAGG: Flexible Autoregressive Graph Generation3 Jun 2026
- 2025Generating Large Semi-Synthetic Graphs of Any Size2 Jul 2025
Similar, not cited
Close in wording, no citation either way
- 2024Cometh: A continuous-time discrete-state graph diffusion model
- 2026Efficient Graph Generation via Direct Prediction and Flow Matching
- 2024Sub-graph Based Diffusion Model for Link Prediction
- 2023Efficient and Degree-Guided Graph Generation via Discrete Diffusion Modeling
- 2023Autoregressive Diffusion Model for Graph Generation
- 2025Simple and Critical Iterative Denoising: A Recasting of Discrete Diffusion in Graph Generation
- 2025Controllable Graph Generation with Diffusion Models via Inference-Time Tree Search Guidance
- 2023Generative Diffusion Models on Graphs: Methods and Applications