ViTBIS: Vision Transformer for Biomedical Image Segmentation
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Abstract (arXiv)
In this paper, we propose a novel network named Vision Transformer for Biomedical Image Segmentation (ViTBIS). Our network splits the input feature maps into three parts with 1× 1, 3× 3 and 5× 5 convolutions in both encoder and decoder. Concat operator is used to merge the features before being fed to three consecutive transformer blocks with attention mechanism embedded inside it. Skip connections are used to connect encoder and decoder transformer blocks. Similarly, transformer blocks and multi scale architecture is used in decoder before being linearly projected to produce the output segmentation map. We test the performance of our network using Synapse multi-organ segmentation dataset, Automated cardiac diagnosis challenge dataset, Brain tumour MRI segmentation dataset and Spleen CT segmentation dataset. Without bells and whistles, our network outperforms most of the previous state of the art CNN and transformer based models using Dice score and the Hausdorff distance as the evaluation metrics.
Key facts. Cited by 5 papers in the map (data through 7 Oct 2026). Builds on 32 of its 44 references that are in the map. First posted on arXiv 15 Jan 2022.
Builds on
32 of 44 references.
References · 32
- 2017Attention Is All You Needcited by 59,932
- 2020An Image is Worth 16x16 Words: Transformers for Image Recognition at Scalecited by 29,915
- 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,604
- 2021Swin Transformer: Hierarchical Vision Transformer using Shifted Windowscited by 12,082
- 2020Training data-efficient image transformers & distillation through attentioncited by 4,560
- 2017Non-local Neural Networkscited by 2,290
- 2021TransUNet: Transformers Make Strong Encoders for Medical Image Segmentationcited by 1,552
- 2018UNet++: A Nested U-Net Architecture for Medical Image Segmentationcited by 1,518
- 20163D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotationcited by 1,471
- 2018Attention U-Net: Learning Where to Look for the Pancreascited by 1,420
- 2021Swin-Unet: Unet-like Pure Transformer for Medical Image Segmentationcited by 1,218
- 2021UNETR: Transformers for 3D Medical Image Segmentationcited by 954
20 more
- 2018Image Transformercited by 770
- 2018Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challengecited by 508
- 2019A large annotated medical image dataset for the development and evaluation of segmentation algorithmscited by 371
- 20183D MRI brain tumor segmentation using autoencoder regularizationcited by 324
- 2021Medical Transformer: Gated Axial-Attention for Medical Image Segmentationcited by 319
- 2018Attention Gated Networks: Learning to Leverage Salient Regions in Medical Imagescited by 271
- 2021TransBTS: Multimodal Brain Tumor Segmentation Using Transformercited by 265
- 2021TransFuse: Fusing Transformers and CNNs for Medical Image Segmentationcited by 258
- 2021CoTr: Efficiently Bridging CNN and Transformer for 3D Medical Image Segmentationcited by 227
- 2019Local Relation Networks for Image Recognitioncited by 210
- 2019Multi-scale self-guided attention for medical image segmentationcited by 84
- 2020Optimization for Medical Image Segmentation: Theory and Practice when evaluating with Dice Score or Jaccard Indexcited by 52
- 2020Domain Adaptive Relational Reasoning for 3D Multi-Organ Segmentationcited by 48
- 2018RA-UNet: A hybrid deep attention-aware network to extract liver and tumor in CT scanscited by 41
- 2017Automatic 3D Cardiovascular MR Segmentation with Densely-Connected Volumetric ConvNetscited by 32
- 2020Uncertainty Quantification using Variational Inference for Biomedical Image Segmentationcited by 10
- 2021DMSANet: Dual Multi Scale Attention Networkcited by 8
- 2020Monocular Depth Estimation Using Multi Scale Neural Network And Feature Fusioncited by 7
- 2020Semantic Segmentation With Multi Scale Spatial Attention For Self Driving Carscited by 6
- 2021AASeg: Attention Aware Network for Real Time Semantic Segmentationcited by 1
Built on by
Citing papers per year: 2022: 4; 2023: 1.
5 papers.
- 2022Vision Transformers in Medical Computer Vision -- A Contemplative Retrospectioncited by 22
- 2022A Comprehensive Survey of Transformers for Computer Visioncited by 13
- 2022Recent Progress in Transformer-based Medical Image Analysiscited by 9
- 2023Attention Mechanisms in Medical Image Segmentation: A Surveycited by 9
- 2022Transformers Meet Visual Learning Understanding: A Comprehensive Reviewcited by 5
- 2023Attention Mechanisms in Medical Image Segmentation: A Survey29 May 2023
- 2022A Comprehensive Survey of Transformers for Computer Vision11 Nov 2022
- 2022Recent Progress in Transformer-based Medical Image Analysis13 Aug 2022
- 2022Vision Transformers in Medical Computer Vision -- A Contemplative Retrospection29 Mar 2022
- 2022Transformers Meet Visual Learning Understanding: A Comprehensive Review24 Mar 2022