How to Leverage Multimodal EHR Data for Better Medical Predictions?
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Abstract (arXiv)
Healthcare is becoming a more and more important research topic recently. With the growing data in the healthcare domain, it offers a great opportunity for deep learning to improve the quality of medical service. However, the complexity of electronic health records (EHR) data is a challenge for the application of deep learning. Specifically, the data produced in the hospital admissions are monitored by the EHR system, which includes structured data like daily body temperature, and unstructured data like free text and laboratory measurements. Although there are some preprocessing frameworks proposed for specific EHR data, the clinical notes that contain significant clinical value are beyond the realm of their consideration. Besides, whether these different data from various views are all beneficial to the medical tasks and how to best utilize these data remain unclear. Therefore, in this paper, we first extract the accompanying clinical notes from EHR and propose a method to integrate these data, we also comprehensively study the different models and the data leverage methods for better medical task prediction. The results on two medical prediction tasks show that our fused model with different data outperforms the state-of-the-art method that without clinical notes, which illustrates the importance of our fusion method and the value of clinical note features. Our code is available at https: //github.com/emnlp-mimic/mimic.
Key facts. Cited by 26 papers in the map (data through 7 Oct 2026). Builds on 17 of its 31 references that are in the map. First posted on arXiv 29 Oct 2021.
Builds on
17 of 31 references.
References · 17
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5 more
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Citing papers per year: 2022: 3; 2023: 1; 2024: 9; 2025: 10; 2026: 3.
26 papers.
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- 2024FuseMoE: Mixture-of-Experts Transformers for Fleximodal Fusioncited by 67
- 2022A Multimodal Transformer: Fusing Clinical Notes with Structured EHR Data for Interpretable In-Hospital Mortality Predictioncited by 48
- 2025TimeXL: Explainable Multi-modal Time Series Prediction with LLM-in-the-Loopcited by 39
- 2022Improving Medical Predictions by Irregular Multimodal Electronic Health Records Modelingcited by 33
- 2025Multi-modal Time Series Analysis: A Tutorial and Surveycited by 24
- 2024REALM: RAG-Driven Enhancement of Multimodal Electronic Health Records Analysis via Large Language Modelscited by 21
- 2025How Can Time Series Analysis Benefit From Multiple Modalities? A Survey and Outlookcited by 20
- 2024EMERGE: Enhancing Multimodal Electronic Health Records Predictive Modeling with Retrieval-Augmented Generationcited by 16
- 2022Multimodal data matters: language model pre-training over structured and unstructured electronic health recordscited by 13
- 2023Hierarchical Pretraining on Multimodal Electronic Health Recordscited by 11
- 2024Recent Advances in Predictive Modeling with Electronic Health Recordscited by 11
- 2024Next Visit Diagnosis Prediction via Medical Code-Centric Multimodal Contrastive EHR Modelling with Hierarchical Regularisationcited by 5
14 more
- 2024BadCLM: Backdoor Attack in Clinical Language Models for Electronic Health Recordscited by 5
- 2024Global Contrastive Training for Multimodal Electronic Health Records with Language Supervisioncited by 4
- 2025Massively Multimodal Foundation Models: A Framework for Capturing Interactions with Specialized Mixture-of-Expertscited by 4
- 2024Automated Fusion of Multimodal Electronic Health Records for Better Medical Predictionscited by 3
- 2024Overcoming Uncertain Incompleteness for Robust Multimodal Sequential Diagnosis Prediction via Curriculum Data Erasing Guided Knowledge Distillationcited by 3
- 2025Rethinking Gating Mechanism in Sparse MoE: Handling Arbitrary Modality Inputs with Confidence-Guided Gatecited by 3
- 2025MEDMKG: Benchmarking Medical Knowledge Exploitation with Multimodal Knowledge Graphcited by 2
- 2025Temporal Entailment Pretraining for Clinical Language Models over EHR Datacited by 1
- 2025CURENet: Combining Unified Representations for Efficient Chronic Disease Predictioncited by 1
- 2025One Size Fits None: Rethinking Fairness in Medical AIcited by 0
- 2025Annotation-Assisted Learning of Treatment Policies From Multimodal Electronic Health Recordscited by 0
- 2026CLIC: Contextual Language-Informed Cardiac Pathology Classificationcited by 0
- 2026CRS-Triage: Confidence- and Reliability-Aware Selective Triage under Incomplete Clinical Evidencecited by 0
- 2026Backdoor Learning in Language Models and Vision-Language Modelscited by 0
- 2026CRS-Triage: Confidence- and Reliability-Aware Selective Triage under Incomplete Clinical Evidence4 Aug 2026
- 2026Backdoor Learning in Language Models and Vision-Language Models8 Jun 2026
- 2026CLIC: Contextual Language-Informed Cardiac Pathology Classification18 May 2026
- 2025CURENet: Combining Unified Representations for Efficient Chronic Disease Prediction14 Nov 2025
- 2025Massively Multimodal Foundation Models: A Framework for Capturing Interactions with Specialized Mixture-of-Experts30 Sep 2025
- 2025Annotation-Assisted Learning of Treatment Policies From Multimodal Electronic Health Records28 Jul 2025
- 2025One Size Fits None: Rethinking Fairness in Medical AI17 Jun 2025
- 2025Rethinking Gating Mechanism in Sparse MoE: Handling Arbitrary Modality Inputs with Confidence-Guided Gate26 May 2025
- 2025MEDMKG: Benchmarking Medical Knowledge Exploitation with Multimodal Knowledge Graph22 May 2025
- 2025Temporal Entailment Pretraining for Clinical Language Models over EHR Data25 Apr 2025
- 2025Multi-modal Time Series Analysis: A Tutorial and Survey17 Mar 2025
- 2025How Can Time Series Analysis Benefit From Multiple Modalities? A Survey and Outlook14 Mar 2025
14 more
- 2025TimeXL: Explainable Multi-modal Time Series Prediction with LLM-in-the-Loop2 Mar 2025
- 2024Overcoming Uncertain Incompleteness for Robust Multimodal Sequential Diagnosis Prediction via Curriculum Data Erasing Guided Knowledge Distillation28 Jul 2024
- 2024BadCLM: Backdoor Attack in Clinical Language Models for Electronic Health Records6 Jul 2024
- 2024EMERGE: Enhancing Multimodal Electronic Health Records Predictive Modeling with Retrieval-Augmented Generation27 May 2024
- 2024Global Contrastive Training for Multimodal Electronic Health Records with Language Supervision10 Apr 2024
- 2024REALM: RAG-Driven Enhancement of Multimodal Electronic Health Records Analysis via Large Language Models10 Feb 2024
- 2024FuseMoE: Mixture-of-Experts Transformers for Fleximodal Fusion5 Feb 2024
- 2024Recent Advances in Predictive Modeling with Electronic Health Records2 Feb 2024
- 2024Next Visit Diagnosis Prediction via Medical Code-Centric Multimodal Contrastive EHR Modelling with Hierarchical Regularisation22 Jan 2024
- 2024Automated Fusion of Multimodal Electronic Health Records for Better Medical Predictions20 Jan 2024
- 2023Hierarchical Pretraining on Multimodal Electronic Health Records11 Oct 2023
- 2022Improving Medical Predictions by Irregular Multimodal Electronic Health Records Modeling18 Oct 2022
- 2022A Multimodal Transformer: Fusing Clinical Notes with Structured EHR Data for Interpretable In-Hospital Mortality Prediction9 Aug 2022
- 2022Multimodal data matters: language model pre-training over structured and unstructured electronic health records25 Jan 2022
- 2024FuseMoE: Mixture-of-Experts Transformers for Fleximodal Fusioncited by 67
- 2025Massively Multimodal Foundation Models: A Framework for Capturing Interactions with Specialized Mixture-of-Expertscited by 4
- 2025Rethinking Gating Mechanism in Sparse MoE: Handling Arbitrary Modality Inputs with Confidence-Guided Gatecited by 3
- 2025Massively Multimodal Foundation Models: A Framework for Capturing Interactions with Specialized Mixture-of-Experts30 Sep 2025
- 2025Rethinking Gating Mechanism in Sparse MoE: Handling Arbitrary Modality Inputs with Confidence-Guided Gate26 May 2025
- 2024FuseMoE: Mixture-of-Experts Transformers for Fleximodal Fusion5 Feb 2024
- 2022A Multimodal Transformer: Fusing Clinical Notes with Structured EHR Data for Interpretable In-Hospital Mortality Predictioncited by 48
- 2025TimeXL: Explainable Multi-modal Time Series Prediction with LLM-in-the-Loopcited by 39
- 2022Improving Medical Predictions by Irregular Multimodal Electronic Health Records Modelingcited by 33
- 2025Multi-modal Time Series Analysis: A Tutorial and Surveycited by 24
- 2024REALM: RAG-Driven Enhancement of Multimodal Electronic Health Records Analysis via Large Language Modelscited by 21
- 2025How Can Time Series Analysis Benefit From Multiple Modalities? A Survey and Outlookcited by 20
- 2022Multimodal data matters: language model pre-training over structured and unstructured electronic health recordscited by 13
- 2023Hierarchical Pretraining on Multimodal Electronic Health Recordscited by 11
- 2024Recent Advances in Predictive Modeling with Electronic Health Recordscited by 11
- 2024Next Visit Diagnosis Prediction via Medical Code-Centric Multimodal Contrastive EHR Modelling with Hierarchical Regularisationcited by 5
- 2024Global Contrastive Training for Multimodal Electronic Health Records with Language Supervisioncited by 4
- 2024Automated Fusion of Multimodal Electronic Health Records for Better Medical Predictionscited by 3
12 most cited of 20 All 20 (JSON)
- 2026CRS-Triage: Confidence- and Reliability-Aware Selective Triage under Incomplete Clinical Evidence4 Aug 2026
- 2026CLIC: Contextual Language-Informed Cardiac Pathology Classification18 May 2026
- 2025CURENet: Combining Unified Representations for Efficient Chronic Disease Prediction14 Nov 2025
- 2025Annotation-Assisted Learning of Treatment Policies From Multimodal Electronic Health Records28 Jul 2025
- 2025One Size Fits None: Rethinking Fairness in Medical AI17 Jun 2025
- 2025MEDMKG: Benchmarking Medical Knowledge Exploitation with Multimodal Knowledge Graph22 May 2025
- 2025Temporal Entailment Pretraining for Clinical Language Models over EHR Data25 Apr 2025
- 2025Multi-modal Time Series Analysis: A Tutorial and Survey17 Mar 2025
- 2025How Can Time Series Analysis Benefit From Multiple Modalities? A Survey and Outlook14 Mar 2025
- 2025TimeXL: Explainable Multi-modal Time Series Prediction with LLM-in-the-Loop2 Mar 2025
- 2024Overcoming Uncertain Incompleteness for Robust Multimodal Sequential Diagnosis Prediction via Curriculum Data Erasing Guided Knowledge Distillation28 Jul 2024
- 2024Global Contrastive Training for Multimodal Electronic Health Records with Language Supervision10 Apr 2024
12 newest of 20 All 20 (JSON)