Data Augmentation in High Dimensional Low Sample Size Setting Using a Geometry-Based Variational Autoencoder
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Abstract (arXiv)
In this paper, we propose a new method to perform data augmentation in a reliable way in the High Dimensional Low Sample Size (HDLSS) setting using a geometry-based variational autoencoder. Our approach combines a proper latent space modeling of the VAE seen as a Riemannian manifold with a new generation scheme which produces more meaningful samples especially in the context of small data sets. The proposed method is tested through a wide experimental study where its robustness to data sets, classifiers and training samples size is stressed. It is also validated on a medical imaging classification task on the challenging ADNI database where a small number of 3D brain MRIs are considered and augmented using the proposed VAE framework. In each case, the proposed method allows for a significant and reliable gain in the classification metrics. For instance, balanced accuracy jumps from 66.3% to 74.3% for a state-of-the-art CNN classifier trained with 50 MRIs of cognitively normal (CN) and 50 Alzheimer disease (AD) patients and from 77.7% to 86.3% when trained with 243 CN and 210 AD while improving greatly sensitivity and specificity metrics.
Key facts. Cited by 27 papers in the map (data through 7 Oct 2026). Builds on 58 of its 141 references that are in the map. First posted on arXiv 30 Apr 2021.
Builds on
58 of 141 references.
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50 most cited of 58 All 58 (JSON)
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Citing papers per year: 2022: 3; 2023: 11; 2024: 6; 2025: 3; 2026: 4.
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- 2024A probabilistic framework for learning non-intrusive corrections to long-time climate simulations from short-time training data2 Aug 2024
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- 2023A Probabilistic Fluctuation based Membership Inference Attack for Diffusion Models23 Aug 2023
- 2023Sampling From Autoencoders' Latent Space via Quantization And Probability Mass Function Concepts21 Aug 2023
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- 2023Deep Learning Approaches for Data Augmentation in Medical Imaging: A Review24 Jul 2023
- 2023Improving Multimodal Joint Variational Autoencoders through Normalizing Flows and Correlation Analysis19 May 2023
- 2023Auditing and Generating Synthetic Data with Controllable Trust Trade-offs21 Apr 2023
- 2023Use the Detection Transformer as a Data Augmenter10 Apr 2023
- 2023VTAE: Variational Transformer Autoencoder with Manifolds Learning3 Apr 2023
- 2023Variational Inference for Longitudinal Data Using Normalizing Flows24 Mar 2023
- 2022A Geometric Perspective on Variational Autoencoders15 Sep 2022
- 2022XADLiME: eXplainable Alzheimer's Disease Likelihood Map Estimation via Clinically-guided Prototype Learning27 Jul 2022
- 2022Pythae: Unifying Generative Autoencoders in Python -- A Benchmarking Use Case16 Jun 2022
- 2023Deep Learning Approaches for Data Augmentation in Medical Imaging: A Reviewcited by 48
- 2022Pythae: Unifying Generative Autoencoders in Python -- A Benchmarking Use Casecited by 26
- 2022A Geometric Perspective on Variational Autoencoderscited by 24
- 2023Auditing and Generating Synthetic Data with Controllable Trust Trade-offscited by 13
- 2023VTAE: Variational Transformer Autoencoder with Manifolds Learningcited by 10
- 2024A probabilistic framework for learning non-intrusive corrections to long-time climate simulations from short-time training datacited by 5
- 2023Improving Joint Speech-Text Representations Without Alignmentcited by 4
- 2023MGAug: Multimodal Geometric Augmentation in Latent Spaces of Image Deformationscited by 4
- 2024Discriminative Hamiltonian Variational Autoencoder for Accurate Tumor Segmentation in Data-Scarce Regimescited by 3
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- 2022XADLiME: eXplainable Alzheimer's Disease Likelihood Map Estimation via Clinically-guided Prototype Learningcited by 1
12 most cited of 23 All 23 (JSON)
- 2026Task-Induced Riemannian Metrics for Vision Transformer Feature Spaces23 Sep 2026
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- 2026An Elastic Shape Variational Autoencoder for Skeleton Pose Trajectories10 May 2026
- 2026PiCSRL: Physics-Informed Contextual Spectral Reinforcement Learning26 Mar 2026
- 2025Heavy-Tailed Class-Conditional Priors for Long-Tailed Generative Modeling2 Sep 2025
- 2025Hyperbolic Dual Feature Augmentation for Open-Environment10 Jun 2025
- 2024On Probabilistic Pullback Metrics for Latent Hyperbolic Manifolds28 Oct 2024
- 2024Pseudo-Nonlinear Data Augmentation: A Constrained Energy Minimization Viewpoint1 Oct 2024
- 2024Current Symmetry Group Equivariant Convolution Frameworks for Representation Learning11 Sep 2024
- 2024A probabilistic framework for learning non-intrusive corrections to long-time climate simulations from short-time training data2 Aug 2024
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12 newest of 23 All 23 (JSON)