COVID-19 Literature Knowledge Graph Construction and Drug Repurposing Report Generation
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Abstract (arXiv)
To combat COVID-19, both clinicians and scientists need to digest vast amounts of relevant biomedical knowledge in scientific literature to understand the disease mechanism and related biological functions. We have developed a novel and comprehensive knowledge discovery framework, COVID-KG to extract fine-grained multimedia knowledge elements (entities and their visual chemical structures, relations, and events) from scientific literature. We then exploit the constructed multimedia knowledge graphs (KGs) for question answering and report generation, using drug repurposing as a case study. Our framework also provides detailed contextual sentences, subfigures, and knowledge subgraphs as evidence.
Key facts. Cited by 32 papers in the map (data through 7 Oct 2026). First posted on arXiv 1 Jul 2020.
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Citing papers per year: 2021: 7; 2022: 7; 2023: 8; 2024: 8; 2025: 0; 2026: 2.
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- 2023Knowledge Graphs: Opportunities and Challengescited by 70
- 2024From Pixels to Insights: A Survey on Automatic Chart Understanding in the Era of Large Foundation Modelscited by 52
- 2022TorchDrug: A Powerful and Flexible Machine Learning Platform for Drug Discoverycited by 45
- 2022Temporal Knowledge Graph Reasoning with Historical Contrastive Learningcited by 42
- 2021A Review of Biomedical Datasets Relating to Drug Discovery: A Knowledge Graph Perspectivecited by 37
- 2021Neural Natural Language Processing for Unstructured Data in Electronic Health Records: a Reviewcited by 35
- 2022BertNet: Harvesting Knowledge Graphs with Arbitrary Relations from Pretrained Language Modelscited by 20
- 2024SciER: An Entity and Relation Extraction Dataset for Datasets, Methods, and Tasks in Scientific Documentscited by 20
- 2022LingYi: Medical Conversational Question Answering System based on Multi-modal Knowledge Graphscited by 15
- 2021BERT might be Overkill: A Tiny but Effective Biomedical Entity Linker based on Residual Convolutional Neural Networkscited by 14
- 2024A Unified Taxonomy-Guided Instruction Tuning Framework for Entity Set Expansion and Taxonomy Expansioncited by 7
- 2022KGML-xDTD: A Knowledge Graph-based Machine Learning Framework for Drug Treatment Prediction and Mechanism Descriptioncited by 4
20 more
- 2023Defining a New NLP Playgroundcited by 4
- 2026RebuttalAgent: Strategic Persuasion in Academic Rebuttal via Theory of Mindcited by 4
- 2024DPCL-Diff: The Temporal Knowledge Graph Reasoning Based on Graph Node Diffusion Model with Dual-Domain Periodic Contrastive Learningcited by 3
- 2021An Analysis of COVID-19 Knowledge Graph Construction and Applicationscited by 2
- 2022Healthcare Knowledge Graph Construction: State-of-the-art, open issues, and opportunitiescited by 2
- 2023All Data on the Table: Novel Dataset and Benchmark for Cross-Modality Scientific Information Extractioncited by 2
- 2024Named Entity Recognition Under Domain Shift via Metric Learning for Life Sciencescited by 2
- 2024Building A Knowledge Graph to Enrich ChatGPT Responses in Manufacturing Service Discoverycited by 2
- 2021TextEssence: A Tool for Interactive Analysis of Semantic Shifts Between Corporacited by 1
- 2021KnowGraph@IITK at SemEval-2021 Task 11: Building KnowledgeGraph for NLP Researchcited by 1
- 2023Navigating Healthcare Insights: A Birds Eye View of Explainability with Knowledge Graphscited by 1
- 2023Exploring the evolution of research topics during the COVID-19 pandemiccited by 1
- 2023Descriptive Knowledge Graph in Biomedical Domaincited by 1
- 2024Accelerating Medical Knowledge Discovery through Automated Knowledge Graph Generation and Enrichmentcited by 1
- 2024Learning Representations for Reasoning: Generalizing Across Diverse Structurescited by 1
- 2026Unifying biomedical knowledge in a modern multimodal graphcited by 1
- 2021STOPPAGE: Spatio-temporal Data Driven Cloud-Fog-Edge Computing Framework for Pandemic Monitoring and Managementcited by 0
- 2022FabKG: A Knowledge graph of Manufacturing Science domain utilizing structured and unconventional unstructured knowledge sourcecited by 0
- 2023Covidia: COVID-19 Interdisciplinary Academic Knowledge Graphcited by 0
- 2023Exploring the Limits of Historical Information for Temporal Knowledge Graph Extrapolationcited by 0
- 2026Unifying biomedical knowledge in a modern multimodal graph29 Apr 2026
- 2026RebuttalAgent: Strategic Persuasion in Academic Rebuttal via Theory of Mind22 Jan 2026
- 2024DPCL-Diff: The Temporal Knowledge Graph Reasoning Based on Graph Node Diffusion Model with Dual-Domain Periodic Contrastive Learning3 Nov 2024
- 2024SciER: An Entity and Relation Extraction Dataset for Datasets, Methods, and Tasks in Scientific Documents28 Oct 2024
- 2024Learning Representations for Reasoning: Generalizing Across Diverse Structures16 Oct 2024
- 2024Accelerating Medical Knowledge Discovery through Automated Knowledge Graph Generation and Enrichment21 Apr 2024
- 2024Building A Knowledge Graph to Enrich ChatGPT Responses in Manufacturing Service Discovery9 Apr 2024
- 2024From Pixels to Insights: A Survey on Automatic Chart Understanding in the Era of Large Foundation Models18 Mar 2024
- 2024A Unified Taxonomy-Guided Instruction Tuning Framework for Entity Set Expansion and Taxonomy Expansion20 Feb 2024
- 2024Named Entity Recognition Under Domain Shift via Metric Learning for Life Sciences19 Jan 2024
- 2023All Data on the Table: Novel Dataset and Benchmark for Cross-Modality Scientific Information Extraction14 Nov 2023
- 2023Defining a New NLP Playground31 Oct 2023
20 more
- 2023Descriptive Knowledge Graph in Biomedical Domain18 Oct 2023
- 2023Exploring the evolution of research topics during the COVID-19 pandemic5 Oct 2023
- 2023Navigating Healthcare Insights: A Birds Eye View of Explainability with Knowledge Graphs28 Sep 2023
- 2023Exploring the Limits of Historical Information for Temporal Knowledge Graph Extrapolation29 Aug 2023
- 2023Covidia: COVID-19 Interdisciplinary Academic Knowledge Graph14 Apr 2023
- 2023Knowledge Graphs: Opportunities and Challenges24 Mar 2023
- 2022KGML-xDTD: A Knowledge Graph-based Machine Learning Framework for Drug Treatment Prediction and Mechanism Description30 Nov 2022
- 2022Temporal Knowledge Graph Reasoning with Historical Contrastive Learning20 Nov 2022
- 2022Healthcare Knowledge Graph Construction: State-of-the-art, open issues, and opportunities8 Jul 2022
- 2022BertNet: Harvesting Knowledge Graphs with Arbitrary Relations from Pretrained Language Models28 Jun 2022
- 2022FabKG: A Knowledge graph of Manufacturing Science domain utilizing structured and unconventional unstructured knowledge source24 May 2022
- 2022LingYi: Medical Conversational Question Answering System based on Multi-modal Knowledge Graphs20 Apr 2022
- 2022TorchDrug: A Powerful and Flexible Machine Learning Platform for Drug Discovery16 Feb 2022
- 2021An Analysis of COVID-19 Knowledge Graph Construction and Applications10 Oct 2021
- 2021BERT might be Overkill: A Tiny but Effective Biomedical Entity Linker based on Residual Convolutional Neural Networks6 Sep 2021
- 2021Neural Natural Language Processing for Unstructured Data in Electronic Health Records: a Review7 Jul 2021
- 2021KnowGraph@IITK at SemEval-2021 Task 11: Building KnowledgeGraph for NLP Research4 Apr 2021
- 2021STOPPAGE: Spatio-temporal Data Driven Cloud-Fog-Edge Computing Framework for Pandemic Monitoring and Management4 Apr 2021
- 2021TextEssence: A Tool for Interactive Analysis of Semantic Shifts Between Corpora19 Mar 2021
- 2021A Review of Biomedical Datasets Relating to Drug Discovery: A Knowledge Graph Perspective19 Feb 2021
- 2023Knowledge Graphs: Opportunities and Challengescited by 70
- 2024From Pixels to Insights: A Survey on Automatic Chart Understanding in the Era of Large Foundation Modelscited by 52
- 2022TorchDrug: A Powerful and Flexible Machine Learning Platform for Drug Discoverycited by 45
- 2022Temporal Knowledge Graph Reasoning with Historical Contrastive Learningcited by 42
- 2021A Review of Biomedical Datasets Relating to Drug Discovery: A Knowledge Graph Perspectivecited by 37
- 2021Neural Natural Language Processing for Unstructured Data in Electronic Health Records: a Reviewcited by 35
- 2022BertNet: Harvesting Knowledge Graphs with Arbitrary Relations from Pretrained Language Modelscited by 20
- 2024SciER: An Entity and Relation Extraction Dataset for Datasets, Methods, and Tasks in Scientific Documentscited by 20
- 2022LingYi: Medical Conversational Question Answering System based on Multi-modal Knowledge Graphscited by 15
- 2021BERT might be Overkill: A Tiny but Effective Biomedical Entity Linker based on Residual Convolutional Neural Networkscited by 14
- 2024A Unified Taxonomy-Guided Instruction Tuning Framework for Entity Set Expansion and Taxonomy Expansioncited by 7
- 2022KGML-xDTD: A Knowledge Graph-based Machine Learning Framework for Drug Treatment Prediction and Mechanism Descriptioncited by 4
12 most cited of 30 All 30 (JSON)
- 2026Unifying biomedical knowledge in a modern multimodal graph29 Apr 2026
- 2026RebuttalAgent: Strategic Persuasion in Academic Rebuttal via Theory of Mind22 Jan 2026
- 2024SciER: An Entity and Relation Extraction Dataset for Datasets, Methods, and Tasks in Scientific Documents28 Oct 2024
- 2024Accelerating Medical Knowledge Discovery through Automated Knowledge Graph Generation and Enrichment21 Apr 2024
- 2024Building A Knowledge Graph to Enrich ChatGPT Responses in Manufacturing Service Discovery9 Apr 2024
- 2024From Pixels to Insights: A Survey on Automatic Chart Understanding in the Era of Large Foundation Models18 Mar 2024
- 2024A Unified Taxonomy-Guided Instruction Tuning Framework for Entity Set Expansion and Taxonomy Expansion20 Feb 2024
- 2024Named Entity Recognition Under Domain Shift via Metric Learning for Life Sciences19 Jan 2024
- 2023All Data on the Table: Novel Dataset and Benchmark for Cross-Modality Scientific Information Extraction14 Nov 2023
- 2023Defining a New NLP Playground31 Oct 2023
- 2023Descriptive Knowledge Graph in Biomedical Domain18 Oct 2023
- 2023Exploring the evolution of research topics during the COVID-19 pandemic5 Oct 2023
12 newest of 30 All 30 (JSON)