Self-supervised Learning on Graphs: Deep Insights and New Direction
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Abstract (arXiv)
The success of deep learning notoriously requires larger amounts of costly annotated data. This has led to the development of self-supervised learning (SSL) that aims to alleviate this limitation by creating domain specific pretext tasks on unlabeled data. Simultaneously, there are increasing interests in generalizing deep learning to the graph domain in the form of graph neural networks (GNNs). GNNs can naturally utilize unlabeled nodes through the simple neighborhood aggregation that is unable to thoroughly make use of unlabeled nodes. Thus, we seek to harness SSL for GNNs to fully exploit the unlabeled data. Different from data instances in the image and text domains, nodes in graphs present unique structure information and they are inherently linked indicating not independent and identically distributed (or i.i.d.). Such complexity is a double-edged sword for SSL on graphs. On the one hand, it determines that it is challenging to adopt solutions from the image and text domains to graphs and dedicated efforts are desired. On the other hand, it provides rich information that enables us to build SSL from a variety of perspectives. Thus, in this paper, we first deepen our understandings on when, why, and which strategies of SSL work with GNNs by empirically studying numerous basic SSL pretext tasks on graphs. Inspired by deep insights from the empirical studies, we propose a new direction SelfTask to build advanced pretext tasks that are able to achieve state-of-the-art performance on various real-world datasets. The specific experimental settings to reproduce our results can be found in urlhttps://github.com/ChandlerBang/SelfTask-GNN.
Key facts. Cited by 108 papers in the map (data through 7 Oct 2026). First posted on arXiv 17 Jun 2020.
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Citing papers per year: 2021: 25; 2022: 35; 2023: 17; 2024: 18; 2025: 12; 2026: 1.
108 papers.
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- 2022GraphMAE: Self-Supervised Masked Graph Autoencoderscited by 443
- 2021Graph Self-Supervised Learning: A Surveycited by 289
- 2021Graph Contrastive Learning Automatedcited by 287
- 2021Self-Supervised Learning of Graph Neural Networks: A Unified Reviewcited by 184
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- 2021Self-supervised Learning on Graphs: Contrastive, Generative,or Predictivecited by 136
- 2021SLAPS: Self-Supervision Improves Structure Learning for Graph Neural Networkscited by 108
- 2022Universal Prompt Tuning for Graph Neural Networkscited by 100
- 2024Position: Graph Foundation Models are Already Herecited by 84
- 2021DIG: A Turnkey Library for Diving into Graph Deep Learning Researchcited by 76
- 2021Towards Self-Explainable Graph Neural Networkcited by 75
- 2021Graph-MLP: Node Classification without Message Passing in Graphcited by 73
38 more
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- 2023A Survey on Privacy in Graph Neural Networks: Attacks, Preservation, and Applicationscited by 22
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- 2024A Survey of Data-Efficient Graph Learningcited by 18
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- 2021Graph Neural Networks: Methods, Applications, and Opportunitiescited by 16
- 2023Towards Data-centric Graph Machine Learning: Review and Outlookcited by 15
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- 2022Multi-task Joint Strategies of Self-supervised Representation Learning on Biomedical Networks for Drug Discoverycited by 13
- 2022Link Prediction with Non-Contrastive Learningcited by 11
50 most cited of 108 All 108 (JSON)
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- 2025Aligning the Spectrum: Hybrid Graph Pre-training and Prompt Tuning across Homophily and Heterophily15 Aug 2025
- 2025Adaptive Riemannian Graph Neural Networks4 Aug 2025
- 2025Joint Embedding Predictive Architecture for self-supervised pretraining on polymer molecular graphs22 Jun 2025
- 2025Graph Prompting for Graph Learning Models: Recent Advances and Future Directions10 Jun 2025
- 2025NOCL: Node-Oriented Conceptualization LLM for Graph Tasks without Message Passing28 May 2025
- 2025Transfer Learning for Temporal Link Prediction15 Apr 2025
- 2025Edge Prompt Tuning for Graph Neural Networks2 Mar 2025
- 2025GraphBridge: Towards Arbitrary Transfer Learning in GNNs26 Feb 2025
- 2025Multi-Domain Graph Foundation Models: Robust Knowledge Transfer via Topology Alignment4 Feb 2025
38 more
- 2025OpenGLT: A Comprehensive Benchmark of Graph Neural Networks for Graph-Level Tasks1 Jan 2025
- 2024Automatic Self-supervised Learning for Social Recommendations25 Dec 2024
- 2024Towards Graph Foundation Models: Learning Generalities Across Graphs via Task-Trees21 Dec 2024
- 2024Instance-Aware Graph Prompt Learning26 Nov 2024
- 2024Contrastive Graph Condensation: Advancing Data Versatility through Self-Supervised Learning26 Nov 2024
- 2024Reliable and Compact Graph Fine-tuning via GraphSparse Prompting29 Oct 2024
- 2024Enhancing Graph Self-Supervised Learning with Graph Interplay5 Oct 2024
- 2024Towards Graph Prompt Learning: A Survey and Beyond26 Aug 2024
- 2024From Overfitting to Robustness: Quantity, Quality, and Variety Oriented Negative Sample Selection in Graph Contrastive Learning21 Jun 2024
- 2024CiliaGraph: Enabling Expression-enhanced Hyper-Dimensional Computation in Ultra-Lightweight and One-Shot Graph Classification on Edge29 May 2024
- 2024Towards Graph Contrastive Learning: A Survey and Beyond20 May 2024
- 2024Exploring Correlations of Self-Supervised Tasks for Graphs7 May 2024
- 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspective24 Mar 2024
- 2024All in One: Multi-Task Prompting for Graph Neural Networks (Extended Abstract)11 Mar 2024
- 2024Unsupervised Graph Neural Architecture Search with Disentangled Self-supervision8 Mar 2024
- 2024Decoupling Weighing and Selecting for Integrating Multiple Graph Pre-training Tasks3 Mar 2024
- 2024A Graph is Worth K Words: Euclideanizing Graph using Pure Transformer4 Feb 2024
- 2024Position: Graph Foundation Models are Already Here3 Feb 2024
- 2024A Survey of Data-Efficient Graph Learning1 Feb 2024
- 2023ADA-GAD: Anomaly-Denoised Autoencoders for Graph Anomaly Detection22 Dec 2023
- 2023PSP: Pre-Training and Structure Prompt Tuning for Graph Neural Networks26 Oct 2023
- 2023Generative and Contrastive Paradigms Are Complementary for Graph Self-Supervised Learning24 Oct 2023
- 2023Enhanced Graph Neural Networks with Ego-Centric Spectral Subgraph Embeddings Augmentation10 Oct 2023
- 2023Graph-level Representation Learning with Joint-Embedding Predictive Architectures27 Sep 2023
- 2023Towards Data-centric Graph Machine Learning: Review and Outlook20 Sep 2023
- 2023A Survey on Privacy in Graph Neural Networks: Attacks, Preservation, and Applications31 Aug 2023
- 2023Local Structure-aware Graph Contrastive Representation Learning7 Aug 2023
- 2023All in One: Multi-task Prompting for Graph Neural Networks4 Jul 2023
- 2023CardiGraphormer: Unveiling the Power of Self-Supervised Learning in Revolutionizing Drug Discovery3 Jul 2023
- 2023Randomized Schur Complement Views for Graph Contrastive Learning6 Jun 2023
- 2023Subgraph Networks Based Contrastive Learning6 Jun 2023
- 2023Simplifying Distributed Neural Network Training on Massive Graphs: Randomized Partitions Improve Model Aggregation17 May 2023
- 2023GANN: Graph Alignment Neural Network for Semi-Supervised Learning14 Mar 2023
- 2023SGL-PT: A Strong Graph Learner with Graph Prompt Tuning24 Feb 2023
- 2023Adversarial Learning Data Augmentation for Graph Contrastive Learning in Recommendation5 Feb 2023
- 2023A Network Science perspective of Graph Convolutional Networks: A survey12 Jan 2023
- 2022Augmenting Knowledge Transfer across Graphs9 Dec 2022
- 2022Alleviating neighbor bias: augmenting graph self-supervise learning with structural equivalent positive samples8 Dec 2022
50 newest of 108 All 108 (JSON)
- 2022GraphMAE: Self-Supervised Masked Graph Autoencoderscited by 443
- 2021Graph Self-Supervised Learning: A Surveycited by 289
- 2021Graph Contrastive Learning Automatedcited by 287
- 2021Self-Supervised Learning of Graph Neural Networks: A Unified Reviewcited by 184
- 2023All in One: Multi-task Prompting for Graph Neural Networkscited by 147
- 2021Self-supervised Learning on Graphs: Contrastive, Generative,or Predictivecited by 136
- 2021SLAPS: Self-Supervision Improves Structure Learning for Graph Neural Networkscited by 108
- 2022Universal Prompt Tuning for Graph Neural Networkscited by 100
- 2024Position: Graph Foundation Models are Already Herecited by 84
- 2021DIG: A Turnkey Library for Diving into Graph Deep Learning Researchcited by 76
- 2021Towards Self-Explainable Graph Neural Networkcited by 75
- 2021Graph-MLP: Node Classification without Message Passing in Graphcited by 73
12 most cited of 107 All 107 (JSON)
- 2026SAOT: Self-Supervised Continual Graph Learning with Structure-Aware Optimal Transport1 Jul 2026
- 2025GraphTOP: Graph Topology-Oriented Prompting for Graph Neural Networks25 Oct 2025
- 2025Aligning the Spectrum: Hybrid Graph Pre-training and Prompt Tuning across Homophily and Heterophily15 Aug 2025
- 2025Adaptive Riemannian Graph Neural Networks4 Aug 2025
- 2025Joint Embedding Predictive Architecture for self-supervised pretraining on polymer molecular graphs22 Jun 2025
- 2025Graph Prompting for Graph Learning Models: Recent Advances and Future Directions10 Jun 2025
- 2025NOCL: Node-Oriented Conceptualization LLM for Graph Tasks without Message Passing28 May 2025
- 2025Transfer Learning for Temporal Link Prediction15 Apr 2025
- 2025Edge Prompt Tuning for Graph Neural Networks2 Mar 2025
- 2025GraphBridge: Towards Arbitrary Transfer Learning in GNNs26 Feb 2025
- 2025Multi-Domain Graph Foundation Models: Robust Knowledge Transfer via Topology Alignment4 Feb 2025
- 2025OpenGLT: A Comprehensive Benchmark of Graph Neural Networks for Graph-Level Tasks1 Jan 2025
12 newest of 107 All 107 (JSON)