GraphMixup: Improving Class-Imbalanced Node Classification on Graphs by Self-supervised Context Prediction
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Abstract (arXiv)
Recent years have witnessed great success in handling node classification tasks with Graph Neural Networks (GNNs). However, most existing GNNs are based on the assumption that node samples for different classes are balanced, while for many real-world graphs, there exists the problem of class imbalance, i.e., some classes may have much fewer samples than others. In this case, directly training a GNN classifier with raw data would under-represent samples from those minority classes and result in sub-optimal performance. This paper presents GraphMixup, a novel mixup-based framework for improving class-imbalanced node classification on graphs. However, directly performing mixup in the input space or embedding space may produce out-of-domain samples due to the extreme sparsity of minority classes; hence we construct semantic relation spaces that allows the Feature Mixup to be performed at the semantic level. Moreover, we apply two context-based self-supervised techniques to capture both local and global information in the graph structure and then propose Edge Mixup specifically for graph data. Finally, we develop a Reinforcement Mixup mechanism to adaptively determine how many samples are to be generated by mixup for those minority classes. Extensive experiments on three real-world datasets show that GraphMixup yields truly encouraging results for class-imbalanced node classification tasks.
Key facts. Cited by 36 papers in the map (data through 7 Oct 2026). Builds on 13 of its 31 references that are in the map. First posted on arXiv 21 Jun 2021.
Builds on
13 of 31 references.
References · 13
- 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,282
- 2017Graph Attention Networkscited by 8,854
- 2017Inductive Representation Learning on Large Graphscited by 6,284
- 2017mixup: Beyond Empirical Risk Minimizationcited by 5,155
- 2016Variational Graph Auto-Encoderscited by 1,373
- 2020Wiki-CS: A Wikipedia-Based Benchmark for Graph Neural Networkscited by 253
- 2021GraphSMOTE: Imbalanced Node Classification on Graphs with Graph Neural Networkscited by 147
- 2020Self-supervised Learning on Graphs: Deep Insights and New Directioncited by 108
- 2020Factorizable Graph Convolutional Networkscited by 79
- 2017Deep Over-sampling Framework for Classifying Imbalanced Datacited by 58
- 2019Independence Promoted Graph Disentangled Networkscited by 38
- 2020Self-Supervised Graph Representation Learning via Global Context Predictioncited by 38
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Citing papers per year: 2022: 11; 2023: 11; 2024: 9; 2025: 3; 2026: 2.
36 papers.
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- 2022Data Augmentation for Deep Graph Learning: A Surveycited by 132
- 2022Out-Of-Distribution Generalization on Graphs: A Surveycited by 97
- 2022Hard Sample Aware Network for Contrastive Deep Graph Clusteringcited by 61
- 2024A Survey of Graph Neural Networks in Real world: Imbalance, Noise, Privacy and OOD Challengescited by 54
- 2023OpenSTL: A Comprehensive Benchmark of Spatio-Temporal Predictive Learningcited by 53
- 2022A Survey of Mix-based Data Augmentation: Taxonomy, Methods, Applications, and Explainabilitycited by 30
- 2023Functional-Group-Based Diffusion for Pocket-Specific Molecule Generation and Elaborationcited by 30
- 2023Quantifying the Knowledge in GNNs for Reliable Distillation into MLPscited by 25
- 2023Extracting Low-/High- Frequency Knowledge from Graph Neural Networks and Injecting it into MLPs: An Effective GNN-to-MLP Distillation Frameworkcited by 24
- 2022Mixed Graph Contrastive Network for Semi-Supervised Node Classificationcited by 21
- 2022A Survey of Trustworthy Graph Learning: Reliability, Explainability, and Privacy Protectioncited by 20
- 2023MixupExplainer: Generalizing Explanations for Graph Neural Networks with Data Augmentationcited by 18
24 more
- 2024A Survey on Mixup Augmentations and Beyondcited by 18
- 2023Towards Reasonable Budget Allocation in Untargeted Graph Structure Attacks via Gradient Debiascited by 16
- 2024A Survey of Deep Graph Learning under Distribution Shifts: from Graph Out-of-Distribution Generalization to Adaptationcited by 16
- 2022TopoImb: Toward Topology-level Imbalance in Learning from Graphscited by 12
- 2023Cost Sensitive GNN-based Imbalanced Learning for Mobile Social Network Fraud Detectioncited by 12
- 2023NodeMixup: Tackling Under-Reaching for Graph Neural Networkscited by 12
- 2022Recent Advances in Reliable Deep Graph Learning: Inherent Noise, Distribution Shift, and Adversarial Attackcited by 10
- 2024PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Predictioncited by 10
- 2023Mastering Long-Tail Complexity on Graphs: Characterization, Learning, and Generalizationcited by 8
- 2023R-Mixup: Riemannian Mixup for Biological Networkscited by 8
- 2022Synthetic Over-sampling for Imbalanced Node Classification with Graph Neural Networkscited by 6
- 2024AGMixup: Adaptive Graph Mixup for Semi-supervised Node Classificationcited by 5
- 2024UniGAP: A Universal and Adaptive Graph Upsampling Approach to Mitigate Over-Smoothing in Node Classification Taskscited by 3
- 2024GAT-RWOS: Graph Attention-Guided Random Walk Oversampling for Imbalanced Data Classificationcited by 1
- 2025SamGoG: A Sampling-Based Graph-of-Graphs Framework for Imbalanced Graph Classificationcited by 1
- 2022Imbalanced Node Processing Method in Graph Neural Network Classification Taskcited by 0
- 2022M3FGM:a node masking and multi-granularity message passing-based federated graph model for spatial-temporal data predictioncited by 0
- 2023Boosting long-term forecasting performance for continuous-time dynamic graph networks via data augmentationcited by 0
- 2024Graffin: Stand for Tails in Imbalanced Node Classificationcited by 0
- 2024Learning to Model Graph Structural Information on MLPs via Graph Structure Self-Contrastingcited by 0
- 2025MixDec Sampling: A Soft Link-based Sampling Method of Graph Neural Network for Recommendationcited by 0
- 2025SemanticST: Spatially Informed Semantic Graph Learning for Clustering, Integration, and Scalable Analysis of Spatial Transcriptomicscited by 0
- 2026NodeImport: Imbalanced Node Classification with Node Importance Assessmentcited by 0
- 2026MDTE: Minority-Aware Diffusion over Temporal Edge Events for Imbalanced Node Classificationcited by 0
- 2026MDTE: Minority-Aware Diffusion over Temporal Edge Events for Imbalanced Node Classification25 Aug 2026
- 2026NodeImport: Imbalanced Node Classification with Node Importance Assessment15 Jul 2026
- 2025SamGoG: A Sampling-Based Graph-of-Graphs Framework for Imbalanced Graph Classification18 Jul 2025
- 2025SemanticST: Spatially Informed Semantic Graph Learning for Clustering, Integration, and Scalable Analysis of Spatial Transcriptomics13 Jun 2025
- 2025MixDec Sampling: A Soft Link-based Sampling Method of Graph Neural Network for Recommendation12 Feb 2025
- 2024GAT-RWOS: Graph Attention-Guided Random Walk Oversampling for Imbalanced Data Classification20 Dec 2024
- 2024AGMixup: Adaptive Graph Mixup for Semi-supervised Node Classification11 Dec 2024
- 2024A Survey of Deep Graph Learning under Distribution Shifts: from Graph Out-of-Distribution Generalization to Adaptation25 Oct 2024
- 2024Learning to Model Graph Structural Information on MLPs via Graph Structure Self-Contrasting9 Sep 2024
- 2024Graffin: Stand for Tails in Imbalanced Node Classification9 Sep 2024
- 2024A Survey on Mixup Augmentations and Beyond8 Sep 2024
- 2024UniGAP: A Universal and Adaptive Graph Upsampling Approach to Mitigate Over-Smoothing in Node Classification Tasks28 Jul 2024
24 more
- 2024A Survey of Graph Neural Networks in Real world: Imbalance, Noise, Privacy and OOD Challenges7 Mar 2024
- 2024PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction13 Feb 2024
- 2023NodeMixup: Tackling Under-Reaching for Graph Neural Networks20 Dec 2023
- 2023MixupExplainer: Generalizing Explanations for Graph Neural Networks with Data Augmentation15 Jul 2023
- 2023OpenSTL: A Comprehensive Benchmark of Spatio-Temporal Predictive Learning20 Jun 2023
- 2023Quantifying the Knowledge in GNNs for Reliable Distillation into MLPs9 Jun 2023
- 2023R-Mixup: Riemannian Mixup for Biological Networks5 Jun 2023
- 2023Functional-Group-Based Diffusion for Pocket-Specific Molecule Generation and Elaboration30 May 2023
- 2023Extracting Low-/High- Frequency Knowledge from Graph Neural Networks and Injecting it into MLPs: An Effective GNN-to-MLP Distillation Framework18 May 2023
- 2023Mastering Long-Tail Complexity on Graphs: Characterization, Learning, and Generalization17 May 2023
- 2023Boosting long-term forecasting performance for continuous-time dynamic graph networks via data augmentation12 Apr 2023
- 2023Towards Reasonable Budget Allocation in Untargeted Graph Structure Attacks via Gradient Debias29 Mar 2023
- 2023Cost Sensitive GNN-based Imbalanced Learning for Mobile Social Network Fraud Detection28 Mar 2023
- 2022A Survey of Mix-based Data Augmentation: Taxonomy, Methods, Applications, and Explainability21 Dec 2022
- 2022TopoImb: Toward Topology-level Imbalance in Learning from Graphs16 Dec 2022
- 2022Hard Sample Aware Network for Contrastive Deep Graph Clustering16 Dec 2022
- 2022M3FGM:a node masking and multi-granularity message passing-based federated graph model for spatial-temporal data prediction27 Oct 2022
- 2022Imbalanced Node Processing Method in Graph Neural Network Classification Task18 Sep 2022
- 2022Synthetic Over-sampling for Imbalanced Node Classification with Graph Neural Networks10 Jun 2022
- 2022Mixed Graph Contrastive Network for Semi-Supervised Node Classification6 Jun 2022
- 2022A Survey of Trustworthy Graph Learning: Reliability, Explainability, and Privacy Protection20 May 2022
- 2022Data Augmentation for Deep Graph Learning: A Survey16 Feb 2022
- 2022Out-Of-Distribution Generalization on Graphs: A Survey16 Feb 2022
- 2022Recent Advances in Reliable Deep Graph Learning: Inherent Noise, Distribution Shift, and Adversarial Attack15 Feb 2022
- 2022Data Augmentation for Deep Graph Learning: A Surveycited by 132
- 2022Out-Of-Distribution Generalization on Graphs: A Surveycited by 97
- 2022Hard Sample Aware Network for Contrastive Deep Graph Clusteringcited by 61
- 2024A Survey of Graph Neural Networks in Real world: Imbalance, Noise, Privacy and OOD Challengescited by 54
- 2023OpenSTL: A Comprehensive Benchmark of Spatio-Temporal Predictive Learningcited by 53
- 2022A Survey of Mix-based Data Augmentation: Taxonomy, Methods, Applications, and Explainabilitycited by 30
- 2023Functional-Group-Based Diffusion for Pocket-Specific Molecule Generation and Elaborationcited by 30
- 2023Quantifying the Knowledge in GNNs for Reliable Distillation into MLPscited by 25
- 2023Extracting Low-/High- Frequency Knowledge from Graph Neural Networks and Injecting it into MLPs: An Effective GNN-to-MLP Distillation Frameworkcited by 24
- 2022Mixed Graph Contrastive Network for Semi-Supervised Node Classificationcited by 21
- 2022A Survey of Trustworthy Graph Learning: Reliability, Explainability, and Privacy Protectioncited by 20
- 2023MixupExplainer: Generalizing Explanations for Graph Neural Networks with Data Augmentationcited by 18
12 most cited of 35 All 35 (JSON)
- 2026MDTE: Minority-Aware Diffusion over Temporal Edge Events for Imbalanced Node Classification25 Aug 2026
- 2026NodeImport: Imbalanced Node Classification with Node Importance Assessment15 Jul 2026
- 2025SamGoG: A Sampling-Based Graph-of-Graphs Framework for Imbalanced Graph Classification18 Jul 2025
- 2025SemanticST: Spatially Informed Semantic Graph Learning for Clustering, Integration, and Scalable Analysis of Spatial Transcriptomics13 Jun 2025
- 2025MixDec Sampling: A Soft Link-based Sampling Method of Graph Neural Network for Recommendation12 Feb 2025
- 2024GAT-RWOS: Graph Attention-Guided Random Walk Oversampling for Imbalanced Data Classification20 Dec 2024
- 2024AGMixup: Adaptive Graph Mixup for Semi-supervised Node Classification11 Dec 2024
- 2024A Survey of Deep Graph Learning under Distribution Shifts: from Graph Out-of-Distribution Generalization to Adaptation25 Oct 2024
- 2024Learning to Model Graph Structural Information on MLPs via Graph Structure Self-Contrasting9 Sep 2024
- 2024Graffin: Stand for Tails in Imbalanced Node Classification9 Sep 2024
- 2024A Survey on Mixup Augmentations and Beyond8 Sep 2024
- 2024UniGAP: A Universal and Adaptive Graph Upsampling Approach to Mitigate Over-Smoothing in Node Classification Tasks28 Jul 2024
12 newest of 35 All 35 (JSON)